PDB Short entry for 1YY4 HEADER TRANSCRIPTION 23-FEB-05 1YY4 TITLE CRYSTAL STRUCTURE OF ESTROGEN RECEPTOR BETA COMPLEXED WITH 1-CHLORO-6- TITLE 2 (4-HYDROXY-PHENYL)-NAPHTHALEN-2-OL COMPND MOL_ID: 1; COMPND 2 MOLECULE: ESTROGEN RECEPTOR BETA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: LIGAND BINDING DOMAIN; COMPND 5 SYNONYM: ER-BETA; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: STEROID RECEPTOR COACTIVATOR-1; COMPND 9 CHAIN: C, D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ESR2, ESTRB, NR3A2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET16B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: THIS SEQUENCE WAS DERIVED FROM STEROID RECEPTOR SOURCE 14 COACTIVATOR-1 KEYWDS ESTROGEN RECEPTOR, ESTROGEN RECEPTOR BETA, ER-BETA, ER, ESTROGEN, KEYWDS 2 NUCLEAR RECEPTOR, TRANSCRIPTION FACTOR, AGONIST, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR R.E.MEWSHAW,R.J.EDSALL JR.,C.YANG,E.S.MANAS,Z.B.XU,R.A.HENDERSON, AUTHOR 2 J.C.KEITH JR.,H.A.HARRIS REVDAT 3 14-FEB-24 1YY4 1 REMARK REVDAT 2 24-FEB-09 1YY4 1 VERSN REVDAT 1 28-FEB-06 1YY4 0 JRNL AUTH R.E.MEWSHAW,R.J.EDSALL JR.,C.YANG,E.S.MANAS,Z.B.XU, JRNL AUTH 2 R.A.HENDERSON,J.C.KEITH JR.,H.A.HARRIS JRNL TITL ERBETA LIGANDS. 3. EXPLOITING TWO BINDING ORIENTATIONS OF JRNL TITL 2 THE 2-PHENYLNAPHTHALENE SCAFFOLD TO ACHIEVE ERBETA JRNL TITL 3 SELECTIVITY JRNL REF J.MED.CHEM. V. 48 3953 2005 JRNL REFN ISSN 0022-2623 JRNL PMID 15943471 JRNL DOI 10.1021/JM058173S REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2655830.200 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 12539 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 642 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.011 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1815 REMARK 3 BIN R VALUE (WORKING SET) : 0.2890 REMARK 3 BIN FREE R VALUE : 0.2990 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 107 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.029 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3692 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 136 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 56.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.60000 REMARK 3 B22 (A**2) : 4.86000 REMARK 3 B33 (A**2) : 0.74000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.32 REMARK 3 ESD FROM SIGMAA (A) : 0.34 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.43 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.41 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.000 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 17.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.780 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.090 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.910 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.380 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.160 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 30.07 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : 122.PAR REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : 122.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1YY4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAR-05. REMARK 100 THE DEPOSITION ID IS D_1000032058. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-SEP-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : 0.9 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12673 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : 0.08700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.3700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.35700 REMARK 200 R SYM FOR SHELL (I) : 0.32500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.380 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 19% PEG3350, 0.2M MG FORMATE, PH 5.9, REMARK 280 EVAPORATION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.98500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.88000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.83850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.88000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.98500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.83850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A 411 REMARK 465 PRO A 412 REMARK 465 LEU A 413 REMARK 465 VAL A 414 REMARK 465 THR A 415 REMARK 465 ALA A 416 REMARK 465 THR A 417 REMARK 465 GLN A 418 REMARK 465 ASP A 419 REMARK 465 ALA A 420 REMARK 465 HIS A 498 REMARK 465 VAL A 499 REMARK 465 LEU A 500 REMARK 465 ARG A 501 REMARK 465 GLY A 502 REMARK 465 CYS A 503 REMARK 465 LYS A 504 REMARK 465 SER A 505 REMARK 465 SER A 506 REMARK 465 ILE A 507 REMARK 465 THR A 508 REMARK 465 GLY A 509 REMARK 465 SER A 510 REMARK 465 GLU A 511 REMARK 465 CYS A 512 REMARK 465 SER A 513 REMARK 465 PRO A 514 REMARK 465 ALA A 515 REMARK 465 GLU A 516 REMARK 465 ASP A 517 REMARK 465 SER A 518 REMARK 465 LYS A 519 REMARK 465 SER A 520 REMARK 465 LYS A 521 REMARK 465 GLU A 522 REMARK 465 GLY A 523 REMARK 465 SER A 524 REMARK 465 GLN A 525 REMARK 465 ASN A 526 REMARK 465 PRO A 527 REMARK 465 GLN A 528 REMARK 465 SER A 529 REMARK 465 GLN A 530 REMARK 465 TYR B 411 REMARK 465 PRO B 412 REMARK 465 LEU B 413 REMARK 465 VAL B 414 REMARK 465 THR B 415 REMARK 465 ALA B 416 REMARK 465 THR B 417 REMARK 465 GLN B 418 REMARK 465 ASP B 419 REMARK 465 ALA B 420 REMARK 465 HIS B 498 REMARK 465 VAL B 499 REMARK 465 LEU B 500 REMARK 465 ARG B 501 REMARK 465 GLY B 502 REMARK 465 CYS B 503 REMARK 465 LYS B 504 REMARK 465 SER B 505 REMARK 465 SER B 506 REMARK 465 ILE B 507 REMARK 465 THR B 508 REMARK 465 GLY B 509 REMARK 465 SER B 510 REMARK 465 GLU B 511 REMARK 465 CYS B 512 REMARK 465 SER B 513 REMARK 465 PRO B 514 REMARK 465 ALA B 515 REMARK 465 GLU B 516 REMARK 465 ASP B 517 REMARK 465 SER B 518 REMARK 465 LYS B 519 REMARK 465 SER B 520 REMARK 465 LYS B 521 REMARK 465 GLU B 522 REMARK 465 GLY B 523 REMARK 465 SER B 524 REMARK 465 GLN B 525 REMARK 465 ASN B 526 REMARK 465 PRO B 527 REMARK 465 GLN B 528 REMARK 465 SER B 529 REMARK 465 GLN B 530 REMARK 465 SER C 601 REMARK 465 GLY C 602 REMARK 465 SER C 603 REMARK 465 HIS C 604 REMARK 465 SER D 601 REMARK 465 GLY D 602 REMARK 465 SER D 603 REMARK 465 HIS D 604 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 409 OG REMARK 470 SER B 409 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG B 388 O HOH B 128 2.08 REMARK 500 OE2 GLU A 493 O HOH A 107 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 422 N SER A 422 CA 0.125 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 421 CB - CG - OD1 ANGL. DEV. = 7.3 DEGREES REMARK 500 ASP A 421 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 287 147.50 -173.54 REMARK 500 THR A 290 -164.50 -105.48 REMARK 500 PRO A 317 126.01 -32.69 REMARK 500 ASP A 359 34.64 -99.97 REMARK 500 LEU A 360 65.95 -160.34 REMARK 500 PRO B 317 106.97 -31.37 REMARK 500 ASP B 349 37.33 -93.78 REMARK 500 HIS B 350 68.15 -150.20 REMARK 500 LEU B 360 67.87 -112.57 REMARK 500 GLU B 371 96.04 -66.58 REMARK 500 SER B 408 34.04 -81.15 REMARK 500 SER B 409 33.68 -64.56 REMARK 500 ASP B 489 -119.80 52.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 424 0.12 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 4NA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 4NA B 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1YYE RELATED DB: PDB DBREF 1YY4 A 263 530 UNP Q9UEV6 ESR2_HUMAN 263 530 DBREF 1YY4 B 263 530 UNP Q9UEV6 ESR2_HUMAN 263 530 DBREF 1YY4 C 601 613 PDB 1YY4 1YY4 601 613 DBREF 1YY4 D 601 613 PDB 1YY4 1YY4 601 613 SEQRES 1 A 268 LEU SER PRO GLU GLN LEU VAL LEU THR LEU LEU GLU ALA SEQRES 2 A 268 GLU PRO PRO HIS VAL LEU ILE SER ARG PRO SER ALA PRO SEQRES 3 A 268 PHE THR GLU ALA SER MET MET MET SER LEU THR LYS LEU SEQRES 4 A 268 ALA ASP LYS GLU LEU VAL HIS MET ILE SER TRP ALA LYS SEQRES 5 A 268 LYS ILE PRO GLY PHE VAL GLU LEU SER LEU PHE ASP GLN SEQRES 6 A 268 VAL ARG LEU LEU GLU SER CYS TRP MET GLU VAL LEU MET SEQRES 7 A 268 MET GLY LEU MET TRP ARG SER ILE ASP HIS PRO GLY LYS SEQRES 8 A 268 LEU ILE PHE ALA PRO ASP LEU VAL LEU ASP ARG ASP GLU SEQRES 9 A 268 GLY LYS CYS VAL GLU GLY ILE LEU GLU ILE PHE ASP MET SEQRES 10 A 268 LEU LEU ALA THR THR SER ARG PHE ARG GLU LEU LYS LEU SEQRES 11 A 268 GLN HIS LYS GLU TYR LEU CYS VAL LYS ALA MET ILE LEU SEQRES 12 A 268 LEU ASN SER SER MET TYR PRO LEU VAL THR ALA THR GLN SEQRES 13 A 268 ASP ALA ASP SER SER ARG LYS LEU ALA HIS LEU LEU ASN SEQRES 14 A 268 ALA VAL THR ASP ALA LEU VAL TRP VAL ILE ALA LYS SER SEQRES 15 A 268 GLY ILE SER SER GLN GLN GLN SER MET ARG LEU ALA ASN SEQRES 16 A 268 LEU LEU MET LEU LEU SER HIS VAL ARG HIS ALA SER ASN SEQRES 17 A 268 LYS GLY MET GLU HIS LEU LEU ASN MET LYS CYS LYS ASN SEQRES 18 A 268 VAL VAL PRO VAL TYR ASP LEU LEU LEU GLU MET LEU ASN SEQRES 19 A 268 ALA HIS VAL LEU ARG GLY CYS LYS SER SER ILE THR GLY SEQRES 20 A 268 SER GLU CYS SER PRO ALA GLU ASP SER LYS SER LYS GLU SEQRES 21 A 268 GLY SER GLN ASN PRO GLN SER GLN SEQRES 1 B 268 LEU SER PRO GLU GLN LEU VAL LEU THR LEU LEU GLU ALA SEQRES 2 B 268 GLU PRO PRO HIS VAL LEU ILE SER ARG PRO SER ALA PRO SEQRES 3 B 268 PHE THR GLU ALA SER MET MET MET SER LEU THR LYS LEU SEQRES 4 B 268 ALA ASP LYS GLU LEU VAL HIS MET ILE SER TRP ALA LYS SEQRES 5 B 268 LYS ILE PRO GLY PHE VAL GLU LEU SER LEU PHE ASP GLN SEQRES 6 B 268 VAL ARG LEU LEU GLU SER CYS TRP MET GLU VAL LEU MET SEQRES 7 B 268 MET GLY LEU MET TRP ARG SER ILE ASP HIS PRO GLY LYS SEQRES 8 B 268 LEU ILE PHE ALA PRO ASP LEU VAL LEU ASP ARG ASP GLU SEQRES 9 B 268 GLY LYS CYS VAL GLU GLY ILE LEU GLU ILE PHE ASP MET SEQRES 10 B 268 LEU LEU ALA THR THR SER ARG PHE ARG GLU LEU LYS LEU SEQRES 11 B 268 GLN HIS LYS GLU TYR LEU CYS VAL LYS ALA MET ILE LEU SEQRES 12 B 268 LEU ASN SER SER MET TYR PRO LEU VAL THR ALA THR GLN SEQRES 13 B 268 ASP ALA ASP SER SER ARG LYS LEU ALA HIS LEU LEU ASN SEQRES 14 B 268 ALA VAL THR ASP ALA LEU VAL TRP VAL ILE ALA LYS SER SEQRES 15 B 268 GLY ILE SER SER GLN GLN GLN SER MET ARG LEU ALA ASN SEQRES 16 B 268 LEU LEU MET LEU LEU SER HIS VAL ARG HIS ALA SER ASN SEQRES 17 B 268 LYS GLY MET GLU HIS LEU LEU ASN MET LYS CYS LYS ASN SEQRES 18 B 268 VAL VAL PRO VAL TYR ASP LEU LEU LEU GLU MET LEU ASN SEQRES 19 B 268 ALA HIS VAL LEU ARG GLY CYS LYS SER SER ILE THR GLY SEQRES 20 B 268 SER GLU CYS SER PRO ALA GLU ASP SER LYS SER LYS GLU SEQRES 21 B 268 GLY SER GLN ASN PRO GLN SER GLN SEQRES 1 C 13 SER GLY SER HIS LYS LEU VAL GLN LEU LEU THR THR THR SEQRES 1 D 13 SER GLY SER HIS LYS LEU VAL GLN LEU LEU THR THR THR HET 4NA A 201 19 HET 4NA B 202 19 HETNAM 4NA 1-CHLORO-6-(4-HYDROXYPHENYL)-2-NAPHTHOL FORMUL 5 4NA 2(C16 H11 CL O2) FORMUL 7 HOH *136(H2 O) HELIX 1 1 SER A 264 GLU A 276 1 13 HELIX 2 2 THR A 290 LYS A 315 1 26 HELIX 3 3 SER A 323 ILE A 348 1 26 HELIX 4 4 ASP A 365 CYS A 369 5 5 HELIX 5 5 GLY A 372 LEU A 390 1 19 HELIX 6 6 GLN A 393 SER A 408 1 16 HELIX 7 7 SER A 422 SER A 444 1 23 HELIX 8 8 SER A 447 LYS A 482 1 36 HELIX 9 9 TYR A 488 ALA A 497 1 10 HELIX 10 10 SER B 264 GLU B 276 1 13 HELIX 11 11 THR B 290 LYS B 314 1 25 HELIX 12 12 SER B 323 ILE B 348 1 26 HELIX 13 13 ASP B 365 CYS B 369 5 5 HELIX 14 14 ILE B 373 LYS B 391 1 19 HELIX 15 15 GLN B 393 SER B 408 1 16 HELIX 16 16 ASP B 421 LYS B 443 1 23 HELIX 17 17 SER B 447 LEU B 461 1 15 HELIX 18 18 LEU B 461 ASN B 483 1 23 HELIX 19 19 TYR B 488 ALA B 497 1 10 HELIX 20 20 LYS C 605 THR C 612 1 8 HELIX 21 21 LYS D 605 THR D 613 1 9 SHEET 1 A 2 LYS A 353 ALA A 357 0 SHEET 2 A 2 LEU A 360 ASP A 363 -1 O LEU A 360 N ALA A 357 SHEET 1 B 2 LYS B 353 ILE B 355 0 SHEET 2 B 2 VAL B 361 ASP B 363 -1 O LEU B 362 N LEU B 354 SITE 1 AC1 9 HOH A 24 MET A 295 GLU A 305 LEU A 339 SITE 2 AC1 9 ARG A 346 ILE A 373 ILE A 376 HIS A 475 SITE 3 AC1 9 LEU A 476 SITE 1 AC2 9 HOH B 5 LEU B 301 GLU B 305 LEU B 339 SITE 2 AC2 9 ARG B 346 ILE B 376 GLY B 472 HIS B 475 SITE 3 AC2 9 LEU B 476 CRYST1 51.970 87.677 99.760 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019242 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011405 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010024 0.00000