PDB Short entry for 1Z5W HEADER STRUCTURAL PROTEIN 20-MAR-05 1Z5W TITLE CRYSTAL STRUCTURE OF GAMMA-TUBULIN BOUND TO GTP COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUBULIN GAMMA-1 CHAIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GAMMA-1 TUBULIN, GAMMA-TUBULIN COMPLEX COMPONENT 1, GCP-1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TUBG1, TUBG; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS COMPLEX WITH GTP, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.A.ALDAZ,L.M.RICE,T.STEARNS,D.A.AGARD REVDAT 3 23-AUG-23 1Z5W 1 REMARK SEQADV REVDAT 2 24-FEB-09 1Z5W 1 VERSN REVDAT 1 31-MAY-05 1Z5W 0 JRNL AUTH H.ALDAZ,L.M.RICE,T.STEARNS,D.A.AGARD JRNL TITL INSIGHTS INTO MICROTUBULE NUCLEATION FROM THE CRYSTAL JRNL TITL 2 STRUCTURE OF HUMAN GAMMA-TUBULIN. JRNL REF NATURE V. 435 523 2005 JRNL REFN ISSN 0028-0836 JRNL PMID 15917813 JRNL DOI 10.1038/NATURE03586 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 105829.010 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 85.8 REMARK 3 NUMBER OF REFLECTIONS : 8638 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.247 REMARK 3 FREE R VALUE : 0.309 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.700 REMARK 3 FREE R VALUE TEST SET COUNT : 842 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.011 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.19 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 73.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1113 REMARK 3 BIN R VALUE (WORKING SET) : 0.3630 REMARK 3 BIN FREE R VALUE : 0.4400 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 8.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 108 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.042 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3077 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.54000 REMARK 3 B22 (A**2) : -23.34000 REMARK 3 B33 (A**2) : 24.88000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 30.86000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.43 REMARK 3 ESD FROM SIGMAA (A) : 0.74 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.60 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.86 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.900 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.340 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.330 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.400 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.430 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.410 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.30 REMARK 3 BSOL : 27.06 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : GTP_XPLOR.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : GTP_XPLOR.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1Z5W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-APR-05. REMARK 100 THE DEPOSITION ID IS D_1000032337. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUL-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8638 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.7 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : 0.10500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1Z5V STRIPPED OF LIGANDS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS, KCL, PEG6000, PH 8.2, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.14500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 37 REMARK 465 GLU A 38 REMARK 465 GLU A 39 REMARK 465 PHE A 40 REMARK 465 ALA A 41 REMARK 465 THR A 42 REMARK 465 GLU A 43 REMARK 465 GLY A 44 REMARK 465 GLU A 95 REMARK 465 HIS A 96 REMARK 465 GLY A 97 REMARK 465 GLY A 98 REMARK 465 GLY A 99 REMARK 465 ALA A 100 REMARK 465 ASP A 176 REMARK 465 GLU A 177 REMARK 465 MET A 178 REMARK 465 GLN A 280 REMARK 465 SER A 281 REMARK 465 VAL A 282 REMARK 465 ALA A 283 REMARK 465 ARG A 309 REMARK 465 ASP A 310 REMARK 465 ARG A 311 REMARK 465 GLN A 312 REMARK 465 LEU A 367 REMARK 465 PRO A 368 REMARK 465 SER A 369 REMARK 465 ALA A 370 REMARK 465 HIS A 371 REMARK 465 PRO A 441 REMARK 465 ASP A 442 REMARK 465 TYR A 443 REMARK 465 ILE A 444 REMARK 465 SER A 445 REMARK 465 TRP A 446 REMARK 465 GLY A 447 REMARK 465 THR A 448 REMARK 465 GLN A 449 REMARK 465 VAL A 450 REMARK 465 ASP A 451 REMARK 465 VAL A 452 REMARK 465 ASP A 453 REMARK 465 GLY A 454 REMARK 465 GLY A 455 REMARK 465 GLU A 456 REMARK 465 GLN A 457 REMARK 465 LYS A 458 REMARK 465 LEU A 459 REMARK 465 ILE A 460 REMARK 465 SER A 461 REMARK 465 GLU A 462 REMARK 465 GLU A 463 REMARK 465 ASP A 464 REMARK 465 LEU A 465 REMARK 465 LEU A 466 REMARK 465 LEU A 467 REMARK 465 GLU A 468 REMARK 465 HIS A 469 REMARK 465 HIS A 470 REMARK 465 HIS A 471 REMARK 465 HIS A 472 REMARK 465 HIS A 473 REMARK 465 HIS A 474 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A 2 CG CD REMARK 470 GLN A 12 CG CD OE1 NE2 REMARK 470 GLN A 24 CG CD OE1 NE2 REMARK 470 GLU A 34 CG CD OE1 OE2 REMARK 470 ALA A 35 CB REMARK 470 THR A 45 OG1 CG2 REMARK 470 ARG A 47 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 54 CG CD OE1 NE2 REMARK 470 GLU A 58 CG CD OE1 OE2 REMARK 470 HIS A 59 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 72 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 73 CG1 CG2 REMARK 470 SER A 76 OG REMARK 470 ASN A 79 CG OD1 ND2 REMARK 470 LEU A 85 CG CD1 CD2 REMARK 470 SER A 94 OG REMARK 470 GLU A 133 CG CD OE1 OE2 REMARK 470 VAL A 182 CG1 CG2 REMARK 470 ARG A 212 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 221 CG CD OE1 NE2 REMARK 470 ASN A 222 CG OD1 ND2 REMARK 470 SER A 259 OG REMARK 470 ARG A 265 CG CD NE CZ NH1 NH2 REMARK 470 SER A 284 OG REMARK 470 LYS A 287 CG CD CE NZ REMARK 470 ARG A 295 CG CD NE CZ NH1 NH2 REMARK 470 THR A 313 OG1 CG2 REMARK 470 ILE A 318 CG1 CG2 CD1 REMARK 470 GLU A 327 CG CD OE1 OE2 REMARK 470 GLN A 332 CG CD OE1 NE2 REMARK 470 HIS A 334 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 335 CG CD CE NZ REMARK 470 GLN A 338 CG CD OE1 NE2 REMARK 470 ARG A 341 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 344 CG CD CE NZ REMARK 470 SER A 355 OG REMARK 470 LEU A 360 CG CD1 CD2 REMARK 470 ARG A 372 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 389 CG CD OE1 OE2 REMARK 470 ARG A 393 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 397 CG CD CE NZ REMARK 470 LYS A 400 CG CD CE NZ REMARK 470 PHE A 408 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 409 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 410 CG CD CE NZ REMARK 470 GLU A 420 CG CD OE1 OE2 REMARK 470 MET A 421 CG SD CE REMARK 470 ARG A 425 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 434 CG CD OE1 OE2 REMARK 470 TYR A 435 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 440 CG CD NE CZ NH1 NH2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 113 CD CE NZ REMARK 480 ARG A 217 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 87 OE1 GLU A 89 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 246 C - N - CA ANGL. DEV. = 11.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 12 -71.78 -51.84 REMARK 500 PRO A 33 21.68 -55.95 REMARK 500 GLU A 34 -73.75 -158.72 REMARK 500 ASP A 56 24.64 -77.26 REMARK 500 ASP A 57 35.38 -149.42 REMARK 500 ASN A 79 34.58 -92.40 REMARK 500 ASN A 102 -31.36 117.33 REMARK 500 SER A 109 -77.13 -69.04 REMARK 500 HIS A 115 -80.06 -24.25 REMARK 500 ALA A 142 -148.05 -71.23 REMARK 500 ASP A 159 -55.10 -124.27 REMARK 500 ASP A 180 32.52 168.81 REMARK 500 VAL A 181 -30.61 -139.65 REMARK 500 VAL A 182 -42.72 77.04 REMARK 500 TYR A 186 -66.76 -94.01 REMARK 500 ASN A 211 -70.47 -57.72 REMARK 500 ARG A 212 -59.15 -25.52 REMARK 500 ILE A 213 -72.78 -52.61 REMARK 500 ASP A 216 -87.41 -70.02 REMARK 500 ARG A 217 41.00 -62.79 REMARK 500 LEU A 218 -29.22 -165.37 REMARK 500 HIS A 219 63.62 70.69 REMARK 500 ASN A 222 78.74 -113.84 REMARK 500 SER A 239 -3.54 -56.59 REMARK 500 PRO A 264 -167.30 -68.08 REMARK 500 ARG A 265 -74.71 56.66 REMARK 500 LEU A 266 90.75 -58.86 REMARK 500 HIS A 267 28.89 -154.60 REMARK 500 THR A 274 -77.06 -87.68 REMARK 500 THR A 277 -133.74 -138.20 REMARK 500 THR A 278 -173.78 50.48 REMARK 500 LYS A 287 126.04 177.58 REMARK 500 LEU A 297 -9.01 -54.72 REMARK 500 ASN A 314 -63.19 42.05 REMARK 500 ALA A 319 149.77 162.07 REMARK 500 VAL A 328 -42.18 -144.75 REMARK 500 ASP A 329 90.20 58.47 REMARK 500 PRO A 330 -4.86 -42.87 REMARK 500 PRO A 353 100.30 -54.12 REMARK 500 ARG A 362 -163.88 -79.10 REMARK 500 PRO A 365 44.26 -64.82 REMARK 500 VAL A 373 -171.74 -67.20 REMARK 500 SER A 374 136.53 -178.84 REMARK 500 SER A 383 4.20 -49.39 REMARK 500 LYS A 400 23.15 -68.03 REMARK 500 ARG A 401 -7.21 -144.62 REMARK 500 PHE A 404 11.41 39.86 REMARK 500 LEU A 405 -0.99 -54.15 REMARK 500 GLN A 407 -36.07 151.90 REMARK 500 GLU A 411 88.33 173.39 REMARK 500 REMARK 500 THIS ENTRY HAS 51 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 92 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 475 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GTP A2466 O1G REMARK 620 2 GTP A2466 O2G 53.3 REMARK 620 3 GTP A2466 O2B 86.1 62.5 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 475 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GTP A 2466 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Z5V RELATED DB: PDB REMARK 900 HIGHER RESOLUTION STRUCTURE WITH THE NON-HYDROLYZABLE NUCLEOOTIDE REMARK 900 GTPGAMMAS DBREF 1Z5W A 1 449 UNP P23258 TBG1_HUMAN 1 449 SEQADV 1Z5W VAL A 450 UNP P23258 CLONING ARTIFACT SEQADV 1Z5W ASP A 451 UNP P23258 CLONING ARTIFACT SEQADV 1Z5W VAL A 452 UNP P23258 CLONING ARTIFACT SEQADV 1Z5W ASP A 453 UNP P23258 CLONING ARTIFACT SEQADV 1Z5W GLY A 454 UNP P23258 CLONING ARTIFACT SEQADV 1Z5W GLY A 455 UNP P23258 CLONING ARTIFACT SEQADV 1Z5W GLU A 456 UNP P23258 CLONING ARTIFACT SEQADV 1Z5W GLN A 457 UNP P23258 CLONING ARTIFACT SEQADV 1Z5W LYS A 458 UNP P23258 CLONING ARTIFACT SEQADV 1Z5W LEU A 459 UNP P23258 CLONING ARTIFACT SEQADV 1Z5W ILE A 460 UNP P23258 CLONING ARTIFACT SEQADV 1Z5W SER A 461 UNP P23258 CLONING ARTIFACT SEQADV 1Z5W GLU A 462 UNP P23258 CLONING ARTIFACT SEQADV 1Z5W GLU A 463 UNP P23258 CLONING ARTIFACT SEQADV 1Z5W ASP A 464 UNP P23258 CLONING ARTIFACT SEQADV 1Z5W LEU A 465 UNP P23258 CLONING ARTIFACT SEQADV 1Z5W LEU A 466 UNP P23258 CLONING ARTIFACT SEQADV 1Z5W LEU A 467 UNP P23258 CLONING ARTIFACT SEQADV 1Z5W GLU A 468 UNP P23258 CLONING ARTIFACT SEQADV 1Z5W HIS A 469 UNP P23258 EXPRESSION TAG SEQADV 1Z5W HIS A 470 UNP P23258 EXPRESSION TAG SEQADV 1Z5W HIS A 471 UNP P23258 EXPRESSION TAG SEQADV 1Z5W HIS A 472 UNP P23258 EXPRESSION TAG SEQADV 1Z5W HIS A 473 UNP P23258 EXPRESSION TAG SEQADV 1Z5W HIS A 474 UNP P23258 EXPRESSION TAG SEQRES 1 A 474 MET PRO ARG GLU ILE ILE THR LEU GLN LEU GLY GLN CYS SEQRES 2 A 474 GLY ASN GLN ILE GLY PHE GLU PHE TRP LYS GLN LEU CYS SEQRES 3 A 474 ALA GLU HIS GLY ILE SER PRO GLU ALA ILE VAL GLU GLU SEQRES 4 A 474 PHE ALA THR GLU GLY THR ASP ARG LYS ASP VAL PHE PHE SEQRES 5 A 474 TYR GLN ALA ASP ASP GLU HIS TYR ILE PRO ARG ALA VAL SEQRES 6 A 474 LEU LEU ASP LEU GLU PRO ARG VAL ILE HIS SER ILE LEU SEQRES 7 A 474 ASN SER PRO TYR ALA LYS LEU TYR ASN PRO GLU ASN ILE SEQRES 8 A 474 TYR LEU SER GLU HIS GLY GLY GLY ALA GLY ASN ASN TRP SEQRES 9 A 474 ALA SER GLY PHE SER GLN GLY GLU LYS ILE HIS GLU ASP SEQRES 10 A 474 ILE PHE ASP ILE ILE ASP ARG GLU ALA ASP GLY SER ASP SEQRES 11 A 474 SER LEU GLU GLY PHE VAL LEU CYS HIS SER ILE ALA GLY SEQRES 12 A 474 GLY THR GLY SER GLY LEU GLY SER TYR LEU LEU GLU ARG SEQRES 13 A 474 LEU ASN ASP ARG TYR PRO LYS LYS LEU VAL GLN THR TYR SEQRES 14 A 474 SER VAL PHE PRO ASN GLN ASP GLU MET SER ASP VAL VAL SEQRES 15 A 474 VAL GLN PRO TYR ASN SER LEU LEU THR LEU LYS ARG LEU SEQRES 16 A 474 THR GLN ASN ALA ASP CYS LEU VAL VAL LEU ASP ASN THR SEQRES 17 A 474 ALA LEU ASN ARG ILE ALA THR ASP ARG LEU HIS ILE GLN SEQRES 18 A 474 ASN PRO SER PHE SER GLN ILE ASN GLN LEU VAL SER THR SEQRES 19 A 474 ILE MET SER ALA SER THR THR THR LEU ARG TYR PRO GLY SEQRES 20 A 474 TYR MET ASN ASN ASP LEU ILE GLY LEU ILE ALA SER LEU SEQRES 21 A 474 ILE PRO THR PRO ARG LEU HIS PHE LEU MET THR GLY TYR SEQRES 22 A 474 THR PRO LEU THR THR ASP GLN SER VAL ALA SER VAL ARG SEQRES 23 A 474 LYS THR THR VAL LEU ASP VAL MET ARG ARG LEU LEU GLN SEQRES 24 A 474 PRO LYS ASN VAL MET VAL SER THR GLY ARG ASP ARG GLN SEQRES 25 A 474 THR ASN HIS CYS TYR ILE ALA ILE LEU ASN ILE ILE GLN SEQRES 26 A 474 GLY GLU VAL ASP PRO THR GLN VAL HIS LYS SER LEU GLN SEQRES 27 A 474 ARG ILE ARG GLU ARG LYS LEU ALA ASN PHE ILE PRO TRP SEQRES 28 A 474 GLY PRO ALA SER ILE GLN VAL ALA LEU SER ARG LYS SER SEQRES 29 A 474 PRO TYR LEU PRO SER ALA HIS ARG VAL SER GLY LEU MET SEQRES 30 A 474 MET ALA ASN HIS THR SER ILE SER SER LEU PHE GLU ARG SEQRES 31 A 474 THR CYS ARG GLN TYR ASP LYS LEU ARG LYS ARG GLU ALA SEQRES 32 A 474 PHE LEU GLU GLN PHE ARG LYS GLU ASP MET PHE LYS ASP SEQRES 33 A 474 ASN PHE ASP GLU MET ASP THR SER ARG GLU ILE VAL GLN SEQRES 34 A 474 GLN LEU ILE ASP GLU TYR HIS ALA ALA THR ARG PRO ASP SEQRES 35 A 474 TYR ILE SER TRP GLY THR GLN VAL ASP VAL ASP GLY GLY SEQRES 36 A 474 GLU GLN LYS LEU ILE SER GLU GLU ASP LEU LEU LEU GLU SEQRES 37 A 474 HIS HIS HIS HIS HIS HIS HET MG A 475 1 HET GTP A2466 32 HETNAM MG MAGNESIUM ION HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE FORMUL 2 MG MG 2+ FORMUL 3 GTP C10 H16 N5 O14 P3 HELIX 1 1 GLY A 11 HIS A 29 1 19 HELIX 2 2 GLU A 70 ASN A 79 1 10 HELIX 3 3 ASN A 87 GLU A 89 5 3 HELIX 4 4 ASN A 103 SER A 129 1 27 HELIX 5 5 GLY A 144 TYR A 161 1 18 HELIX 6 6 VAL A 183 ASN A 198 1 16 HELIX 7 7 ASN A 207 ASP A 216 1 10 HELIX 8 8 SER A 224 SER A 239 1 16 HELIX 9 9 THR A 240 TYR A 245 1 6 HELIX 10 10 ASP A 252 ILE A 261 1 10 HELIX 11 11 THR A 289 LEU A 297 1 9 HELIX 12 12 LEU A 298 VAL A 303 5 6 HELIX 13 13 ASP A 329 LYS A 344 1 16 HELIX 14 14 ILE A 384 LYS A 400 1 17 HELIX 15 15 PHE A 404 ARG A 409 1 6 HELIX 16 16 ASP A 416 TYR A 435 1 20 SHEET 1 A10 ILE A 91 LEU A 93 0 SHEET 2 A10 ALA A 64 ASP A 68 1 N LEU A 66 O TYR A 92 SHEET 3 A10 GLU A 4 LEU A 10 1 N GLN A 9 O VAL A 65 SHEET 4 A10 LEU A 132 SER A 140 1 O VAL A 136 N LEU A 8 SHEET 5 A10 LEU A 165 PHE A 172 1 O GLN A 167 N PHE A 135 SHEET 6 A10 CYS A 201 ASP A 206 1 O LEU A 205 N PHE A 172 SHEET 7 A10 PHE A 268 TYR A 273 1 O LEU A 269 N VAL A 204 SHEET 8 A10 GLY A 375 HIS A 381 -1 O MET A 377 N GLY A 272 SHEET 9 A10 TYR A 317 GLN A 325 -1 N ILE A 318 O ASN A 380 SHEET 10 A10 ILE A 356 SER A 361 1 O GLN A 357 N ILE A 320 SHEET 1 B 2 PHE A 52 GLN A 54 0 SHEET 2 B 2 TYR A 60 PRO A 62 -1 O ILE A 61 N TYR A 53 LINK MG MG A 475 O1G GTP A2466 1555 1555 3.11 LINK MG MG A 475 O2G GTP A2466 1555 1555 2.23 LINK MG MG A 475 O2B GTP A2466 1555 1555 2.84 SITE 1 AC1 1 GTP A2466 SITE 1 AC2 19 GLY A 11 GLN A 12 CYS A 13 GLN A 16 SITE 2 AC2 19 GLY A 101 ASN A 102 SER A 140 ALA A 142 SITE 3 AC2 19 GLY A 143 GLY A 144 THR A 145 VAL A 171 SITE 4 AC2 19 PRO A 173 GLN A 184 ASN A 207 PHE A 225 SITE 5 AC2 19 ILE A 228 ASN A 229 MG A 475 CRYST1 52.190 76.290 64.810 90.00 102.31 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019161 0.000000 0.004181 0.00000 SCALE2 0.000000 0.013108 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015793 0.00000