PDB Short entry for 1Z6J HEADER HYDROLASE 22-MAR-05 1Z6J TITLE CRYSTAL STRUCTURE OF A TERNARY COMPLEX OF FACTOR VIIA/TISSUE TITLE 2 FACTOR/PYRAZINONE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: COAGULATION FACTOR VII; COMPND 3 CHAIN: L; COMPND 4 FRAGMENT: LIGHT CHAIN; COMPND 5 SYNONYM: SERUM PROTHROMBIN CONVERSION ACCELERATOR, SPCA, COMPND 6 PROCONVERTIN, EPTACOG ALFA; COMPND 7 EC: 3.4.21.21; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: COAGULATION FACTOR VII; COMPND 11 CHAIN: H; COMPND 12 FRAGMENT: HEAVY CHAIN; COMPND 13 SYNONYM: SERUM PROTHROMBIN CONVERSION ACCELERATOR, SPCA, COMPND 14 PROCONVERTIN, EPTACOG ALFA; COMPND 15 EC: 3.4.21.21; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 3; COMPND 18 MOLECULE: TISSUE FACTOR; COMPND 19 CHAIN: T; COMPND 20 FRAGMENT: RESIDUES 33-243; COMPND 21 SYNONYM: TF, COAGULATION FACTOR III, THROMBOPLASTIN, CD142 ANTIGEN; COMPND 22 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: F7; SOURCE 6 EXPRESSION_SYSTEM: CRICETINAE; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HAMSTERS; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 10026; SOURCE 9 EXPRESSION_SYSTEM_ORGAN: KIDNEY; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: F7; SOURCE 15 EXPRESSION_SYSTEM: CRICETINAE; SOURCE 16 EXPRESSION_SYSTEM_COMMON: HAMSTERS; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 10026; SOURCE 18 EXPRESSION_SYSTEM_ORGAN: KIDNEY; SOURCE 19 MOL_ID: 3; SOURCE 20 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 21 ORGANISM_COMMON: HUMAN; SOURCE 22 ORGANISM_TAXID: 9606; SOURCE 23 GENE: F3; SOURCE 24 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 25 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BLOOD COAGULATION, SERINE PROTEASE, THROMBOSIS, GLA, PYRAZINONE, KEYWDS 2 BENZAMIDINE, TISSUE FACTOR, COFACTOR, ENZYME INHIBITOR COMPLEX, KEYWDS 3 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR B.A.SCHWEITZER,W.L.NEUMANN,H.K.RAHMAN,C.L.KUSTURIN,K.R.SAMPLE, AUTHOR 2 G.I.PODA,R.G.KURUMBAIL,A.M.STEVENS,R.A.STEGEMAN,W.C.STALLINGS REVDAT 5 24-JUL-19 1Z6J 1 REMARK LINK REVDAT 4 11-OCT-17 1Z6J 1 REMARK REVDAT 3 24-FEB-09 1Z6J 1 VERSN REVDAT 2 14-JUN-05 1Z6J 1 JRNL REVDAT 1 03-MAY-05 1Z6J 0 JRNL AUTH B.A.SCHWEITZER,W.L.NEUMANN,H.K.RAHMAN,C.L.KUSTURIN, JRNL AUTH 2 K.R.SAMPLE,G.I.PODA,R.G.KURUMBAIL,A.M.STEVENS,R.A.STEGEMAN, JRNL AUTH 3 W.C.STALLINGS,M.S.SOUTH JRNL TITL STRUCTURE-BASED DESIGN AND SYNTHESIS OF PYRAZINONES JRNL TITL 2 CONTAINING NOVEL P1 'SIDE POCKET' MOIETIES AS INHIBITORS OF JRNL TITL 3 TF/VIIA. JRNL REF BIOORG.MED.CHEM.LETT. V. 15 3006 2005 JRNL REFN ISSN 0960-894X JRNL PMID 15913999 JRNL DOI 10.1016/J.BMCL.2005.04.037 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.S.SOUTH,B.L.CASE,R.S.WOOD,D.E.JONES,M.J.HAYES,T.J.GIRARD, REMARK 1 AUTH 2 R.M.LACHANCE,N.S.NICHOLSON,M.CLARE,A.M.STEVENS,R.A.STEGEMAN, REMARK 1 AUTH 3 W.C.STALLINGS,R.G.KURUMBAIL,J.J.PARLOW REMARK 1 TITL STRUCTURE-BASED DESIGN OF PYRAZINONE ANTITHROMBOTICS AS REMARK 1 TITL 2 SELECTIVE INHIBITORS OF THE TISSUE FACTOR VIIA COMPLEX REMARK 1 REF BIOORG.MED.CHEM.LETT. V. 13 2319 2003 REMARK 1 REFN ISSN 0960-894X REMARK 1 PMID 12824026 REMARK 1 DOI 10.1016/S0960-894X(03)00410-4 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.J.PARLOW,T.A.DICE,R.M.LACHANCE,T.J.GIRARD,A.M.STEVENS, REMARK 1 AUTH 2 R.A.STEGEMAN,W.C.STALLINGS,R.G.KURUMBAIL,M.S.SOUTH REMARK 1 TITL POLYMER-ASSISTED SOLUTION-PHASE LIBRARY SYNTHESIS AND REMARK 1 TITL 2 CRYSTAL STRUCTURE OF ALPHA-KETOTHIAZOLES AS TISSUE FACTOR REMARK 1 TITL 3 VIIA INHIBITORS REMARK 1 REF J.MED.CHEM. V. 46 4043 2003 REMARK 1 REFN ISSN 0022-2623 REMARK 1 PMID 12954057 REMARK 1 DOI 10.1021/JM030130T REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 98.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 90.1 REMARK 3 NUMBER OF REFLECTIONS : 44217 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM (10%) REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 4402 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.09 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2462 REMARK 3 BIN FREE R VALUE : 0.2969 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 480 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4767 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 51 REMARK 3 SOLVENT ATOMS : 389 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.670 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC, RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULKSOLVENT CORRECTION APPLIED REMARK 4 REMARK 4 1Z6J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAR-05. REMARK 100 THE DEPOSITION ID IS D_1000032360. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-OCT-02 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000, DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46245 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : 0.09600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.38000 REMARK 200 R SYM FOR SHELL (I) : 0.38000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM CITRATE, 16-24% PEG 4K, 150 MM REMARK 280 MGCL2, PH 7.5, VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.82600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.78850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.56850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.78850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.82600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.56850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, T REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY T 87 REMARK 465 SER T 88 REMARK 465 ALA T 89 REMARK 465 GLY T 90 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU H 68 CA - CB - CG ANGL. DEV. = -17.9 DEGREES REMARK 500 HIS H 199 N - CA - C ANGL. DEV. = -21.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE L 4 111.76 -8.14 REMARK 500 LEU L 5 -42.25 120.56 REMARK 500 GLN L 21 108.13 60.37 REMARK 500 CGU L 25 -49.85 144.99 REMARK 500 LYS L 32 -40.42 75.76 REMARK 500 SER L 53 61.75 39.56 REMARK 500 GLN L 66 15.82 58.45 REMARK 500 GLN L 100 -98.27 -119.45 REMARK 500 ASP L 123 1.12 -61.19 REMARK 500 ASN H 60D 77.19 -103.34 REMARK 500 HIS H 71 -60.10 -148.76 REMARK 500 THR H 129C -60.17 -122.84 REMARK 500 SER H 214 -62.64 -125.58 REMARK 500 THR T 4 -96.60 -52.86 REMARK 500 THR T 6 151.47 80.97 REMARK 500 PHE T 19 -2.17 74.84 REMARK 500 ASP T 66 86.62 -170.72 REMARK 500 ALA T 80 91.63 -48.94 REMARK 500 VAL T 83 18.31 -63.32 REMARK 500 GLU T 84 95.67 -45.91 REMARK 500 ASN T 137 81.99 54.36 REMARK 500 ASN T 138 -18.73 84.28 REMARK 500 LYS T 159 -89.94 -78.93 REMARK 500 SER T 160 -34.38 168.87 REMARK 500 LYS T 165 124.17 72.56 REMARK 500 THR T 172 -150.52 -120.73 REMARK 500 SER T 195 7.50 -68.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA H 400 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU H 75 O REMARK 620 2 GLU H 80 OE1 92.2 REMARK 620 3 HOH H 446 O 103.2 88.0 REMARK 620 4 HOH H 508 O 86.7 89.0 169.8 REMARK 620 5 GLU H 70 OE1 170.5 92.0 85.5 84.9 REMARK 620 6 ASP H 72 O 81.2 170.5 86.8 97.5 95.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA L 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN L 64 O REMARK 620 2 GLN L 49 OE1 80.9 REMARK 620 3 GLY L 47 O 142.5 61.7 REMARK 620 4 ASP L 46 OD1 95.8 87.6 85.2 REMARK 620 5 ASP L 63 OD2 92.5 67.4 72.2 152.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG L 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CGU L 14 OE12 REMARK 620 2 CGU L 19 OE21 139.3 REMARK 620 3 CGU L 19 OE12 84.9 57.0 REMARK 620 4 CGU L 14 OE21 58.6 93.8 73.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA H 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA L 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG L 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PY3 H 403 DBREF 1Z6J L 1 142 UNP P08709 FA7_HUMAN 61 202 DBREF 1Z6J H 16 257 UNP P08709 FA7_HUMAN 213 466 DBREF 1Z6J T 1 211 UNP P13726 TF_HUMAN 33 243 SEQADV 1Z6J CGU L 6 UNP P08709 GLU 66 MODIFIED RESIDUE SEQADV 1Z6J CGU L 7 UNP P08709 GLU 67 MODIFIED RESIDUE SEQADV 1Z6J CGU L 14 UNP P08709 GLU 74 MODIFIED RESIDUE SEQADV 1Z6J CGU L 16 UNP P08709 GLU 76 MODIFIED RESIDUE SEQADV 1Z6J CGU L 19 UNP P08709 GLU 79 MODIFIED RESIDUE SEQADV 1Z6J CGU L 20 UNP P08709 GLU 80 MODIFIED RESIDUE SEQADV 1Z6J CGU L 25 UNP P08709 GLU 85 MODIFIED RESIDUE SEQADV 1Z6J CGU L 26 UNP P08709 GLU 86 MODIFIED RESIDUE SEQADV 1Z6J CGU L 29 UNP P08709 GLU 89 MODIFIED RESIDUE SEQADV 1Z6J CGU L 35 UNP P08709 GLU 95 MODIFIED RESIDUE SEQRES 1 L 142 ALA ASN ALA PHE LEU CGU CGU LEU ARG PRO GLY SER LEU SEQRES 2 L 142 CGU ARG CGU CYS LYS CGU CGU GLN CYS SER PHE CGU CGU SEQRES 3 L 142 ALA ARG CGU ILE PHE LYS ASP ALA CGU ARG THR LYS LEU SEQRES 4 L 142 PHE TRP ILE SER TYR SER ASP GLY ASP GLN CYS ALA SER SEQRES 5 L 142 SER PRO CYS GLN ASN GLY GLY SER CYS LYS ASP GLN LEU SEQRES 6 L 142 GLN SER TYR ILE CYS PHE CYS LEU PRO ALA PHE GLU GLY SEQRES 7 L 142 ARG ASN CYS GLU THR HIS LYS ASP ASP GLN LEU ILE CYS SEQRES 8 L 142 VAL ASN GLU ASN GLY GLY CYS GLU GLN TYR CYS SER ASP SEQRES 9 L 142 HIS THR GLY THR LYS ARG SER CYS ARG CYS HIS GLU GLY SEQRES 10 L 142 TYR SER LEU LEU ALA ASP GLY VAL SER CYS THR PRO THR SEQRES 11 L 142 VAL GLU TYR PRO CYS GLY LYS ILE PRO ILE LEU GLU SEQRES 1 H 254 ILE VAL GLY GLY LYS VAL CYS PRO LYS GLY GLU CYS PRO SEQRES 2 H 254 TRP GLN VAL LEU LEU LEU VAL ASN GLY ALA GLN LEU CYS SEQRES 3 H 254 GLY GLY THR LEU ILE ASN THR ILE TRP VAL VAL SER ALA SEQRES 4 H 254 ALA HIS CYS PHE ASP LYS ILE LYS ASN TRP ARG ASN LEU SEQRES 5 H 254 ILE ALA VAL LEU GLY GLU HIS ASP LEU SER GLU HIS ASP SEQRES 6 H 254 GLY ASP GLU GLN SER ARG ARG VAL ALA GLN VAL ILE ILE SEQRES 7 H 254 PRO SER THR TYR VAL PRO GLY THR THR ASN HIS ASP ILE SEQRES 8 H 254 ALA LEU LEU ARG LEU HIS GLN PRO VAL VAL LEU THR ASP SEQRES 9 H 254 HIS VAL VAL PRO LEU CYS LEU PRO GLU ARG THR PHE SER SEQRES 10 H 254 GLU ARG THR LEU ALA PHE VAL ARG PHE SER LEU VAL SER SEQRES 11 H 254 GLY TRP GLY GLN LEU LEU ASP ARG GLY ALA THR ALA LEU SEQRES 12 H 254 GLU LEU MET VAL LEU ASN VAL PRO ARG LEU MET THR GLN SEQRES 13 H 254 ASP CYS LEU GLN GLN SER ARG LYS VAL GLY ASP SER PRO SEQRES 14 H 254 ASN ILE THR GLU TYR MET PHE CYS ALA GLY TYR SER ASP SEQRES 15 H 254 GLY SER LYS ASP SER CYS LYS GLY ASP SER GLY GLY PRO SEQRES 16 H 254 HIS ALA THR HIS TYR ARG GLY THR TRP TYR LEU THR GLY SEQRES 17 H 254 ILE VAL SER TRP GLY GLN GLY CYS ALA THR VAL GLY HIS SEQRES 18 H 254 PHE GLY VAL TYR THR ARG VAL SER GLN TYR ILE GLU TRP SEQRES 19 H 254 LEU GLN LYS LEU MET ARG SER GLU PRO ARG PRO GLY VAL SEQRES 20 H 254 LEU LEU ARG ALA PRO PHE PRO SEQRES 1 T 211 SER GLY THR THR ASN THR VAL ALA ALA TYR ASN LEU THR SEQRES 2 T 211 TRP LYS SER THR ASN PHE LYS THR ILE LEU GLU TRP GLU SEQRES 3 T 211 PRO LYS PRO VAL ASN GLN VAL TYR THR VAL GLN ILE SER SEQRES 4 T 211 THR LYS SER GLY ASP TRP LYS SER LYS CYS PHE TYR THR SEQRES 5 T 211 THR ASP THR GLU CYS ASP LEU THR ASP GLU ILE VAL LYS SEQRES 6 T 211 ASP VAL LYS GLN THR TYR LEU ALA ARG VAL PHE SER TYR SEQRES 7 T 211 PRO ALA GLY ASN VAL GLU SER THR GLY SER ALA GLY GLU SEQRES 8 T 211 PRO LEU TYR GLU ASN SER PRO GLU PHE THR PRO TYR LEU SEQRES 9 T 211 GLU THR ASN LEU GLY GLN PRO THR ILE GLN SER PHE GLU SEQRES 10 T 211 GLN VAL GLY THR LYS VAL ASN VAL THR VAL GLU ASP GLU SEQRES 11 T 211 ARG THR LEU VAL ARG ARG ASN ASN THR PHE LEU SER LEU SEQRES 12 T 211 ARG ASP VAL PHE GLY LYS ASP LEU ILE TYR THR LEU TYR SEQRES 13 T 211 TYR TRP LYS SER SER SER SER GLY LYS LYS THR ALA LYS SEQRES 14 T 211 THR ASN THR ASN GLU PHE LEU ILE ASP VAL ASP LYS GLY SEQRES 15 T 211 GLU ASN TYR CYS PHE SER VAL GLN ALA VAL ILE PRO SER SEQRES 16 T 211 ARG THR VAL ASN ARG LYS SER THR ASP SER PRO VAL GLU SEQRES 17 T 211 CYS MET GLY MODRES 1Z6J CGU L 6 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 1Z6J CGU L 7 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 1Z6J CGU L 14 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 1Z6J CGU L 16 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 1Z6J CGU L 19 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 1Z6J CGU L 20 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 1Z6J CGU L 25 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 1Z6J CGU L 26 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 1Z6J CGU L 29 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 1Z6J CGU L 35 GLU GAMMA-CARBOXY-GLUTAMIC ACID HET CGU L 6 12 HET CGU L 7 12 HET CGU L 14 12 HET CGU L 16 12 HET CGU L 19 12 HET CGU L 20 12 HET CGU L 25 12 HET CGU L 26 12 HET CGU L 29 12 HET CGU L 35 12 HET CA L 401 1 HET MG L 402 1 HET CA H 400 1 HET PY3 H 403 48 HETNAM CGU GAMMA-CARBOXY-GLUTAMIC ACID HETNAM CA CALCIUM ION HETNAM MG MAGNESIUM ION HETNAM PY3 5-[AMINO(IMINO)METHYL]-2-[({[6-[3-AMINO-5-({[(1R)-1- HETNAM 2 PY3 METHYLPROPYL]AMINO}CARBONYL)PHENYL]-3- HETNAM 3 PY3 (ISOPROPYLAMINO)-2-OXOPYRAZIN-1(2H)-YL]ACETYL}AMINO) HETNAM 4 PY3 METHYL]-N-PYRIDIN-4-YLBENZAMIDE FORMUL 1 CGU 10(C6 H9 N O6) FORMUL 4 CA 2(CA 2+) FORMUL 5 MG MG 2+ FORMUL 7 PY3 C34 H40 N10 O4 FORMUL 8 HOH *389(H2 O) HELIX 1 1 LEU L 5 ARG L 9 5 5 HELIX 2 2 SER L 12 CYS L 17 1 6 HELIX 3 3 CGU L 25 LYS L 32 1 8 HELIX 4 4 ASP L 33 SER L 45 1 13 HELIX 5 5 ASP L 48 SER L 53 5 6 HELIX 6 6 ASP L 86 GLN L 88 5 3 HELIX 7 7 ASN L 93 CYS L 98 5 6 HELIX 8 8 ALA H 55 ASP H 60 5 6 HELIX 9 9 ASN H 60D ARG H 62 5 3 HELIX 10 10 GLU H 125 THR H 129C 1 8 HELIX 11 11 LEU H 129D VAL H 129G 5 4 HELIX 12 12 MET H 164 GLN H 170A 1 8 HELIX 13 13 TYR H 234 ARG H 243 1 10 HELIX 14 14 LEU T 59 VAL T 64 1 6 HELIX 15 15 GLY T 81 GLU T 84 5 4 HELIX 16 16 THR T 101 THR T 106 1 6 HELIX 17 17 LEU T 143 GLY T 148 1 6 HELIX 18 18 LYS T 149 LEU T 151 5 3 SHEET 1 A 2 SER L 60 ASP L 63 0 SHEET 2 A 2 TYR L 68 PHE L 71 -1 O PHE L 71 N SER L 60 SHEET 1 B 2 PHE L 76 GLU L 77 0 SHEET 2 B 2 THR L 83 HIS L 84 -1 O THR L 83 N GLU L 77 SHEET 1 C 2 TYR L 101 SER L 103 0 SHEET 2 C 2 SER L 111 ARG L 113 -1 O SER L 111 N SER L 103 SHEET 1 D 2 TYR L 118 LEU L 120 0 SHEET 2 D 2 CYS L 127 PRO L 129 -1 O THR L 128 N SER L 119 SHEET 1 E 8 LYS H 20 VAL H 21 0 SHEET 2 E 8 MET H 156 LEU H 163 -1 O VAL H 157 N LYS H 20 SHEET 3 E 8 MET H 180 ALA H 183 -1 O CYS H 182 N LEU H 163 SHEET 4 E 8 GLY H 226 ARG H 230 -1 O TYR H 228 N PHE H 181 SHEET 5 E 8 THR H 206 TRP H 215 -1 N TRP H 215 O VAL H 227 SHEET 6 E 8 PRO H 198 TYR H 203 -1 N THR H 201 O TYR H 208 SHEET 7 E 8 PHE H 135 GLY H 140 -1 N LEU H 137 O ALA H 200 SHEET 8 E 8 MET H 156 LEU H 163 -1 O VAL H 160 N SER H 136 SHEET 1 F 8 LEU H 251 ALA H 254 0 SHEET 2 F 8 GLN H 81 PRO H 91 1 N VAL H 88 O LEU H 252 SHEET 3 F 8 ALA H 104 LEU H 108 -1 O LEU H 105 N ILE H 89 SHEET 4 F 8 TRP H 51 SER H 54 -1 N VAL H 52 O LEU H 106 SHEET 5 F 8 ALA H 39 LEU H 46 -1 N THR H 45 O VAL H 53 SHEET 6 F 8 GLN H 30 VAL H 35 -1 N LEU H 33 O CYS H 42 SHEET 7 F 8 LEU H 64 LEU H 68 -1 O ILE H 65 N LEU H 34 SHEET 8 F 8 GLN H 81 PRO H 91 -1 O ARG H 83 N ALA H 66 SHEET 1 G 3 TYR T 10 THR T 17 0 SHEET 2 G 3 LYS T 20 GLU T 26 -1 O ILE T 22 N LYS T 15 SHEET 3 G 3 GLU T 56 ASP T 58 -1 O CYS T 57 N LEU T 23 SHEET 1 H 4 LYS T 46 THR T 52 0 SHEET 2 H 4 GLN T 32 THR T 40 -1 N TYR T 34 O THR T 52 SHEET 3 H 4 TYR T 71 PRO T 79 -1 O TYR T 78 N VAL T 33 SHEET 4 H 4 LEU T 93 ASN T 96 -1 O LEU T 93 N SER T 77 SHEET 1 I 3 ILE T 113 VAL T 119 0 SHEET 2 I 3 LYS T 122 VAL T 127 -1 O LYS T 122 N VAL T 119 SHEET 3 I 3 GLU T 174 ASP T 178 -1 O PHE T 175 N VAL T 125 SHEET 1 J 2 ARG T 131 ARG T 135 0 SHEET 2 J 2 PHE T 140 SER T 142 -1 O LEU T 141 N VAL T 134 SHEET 1 K 4 LYS T 166 THR T 170 0 SHEET 2 K 4 ILE T 152 TRP T 158 -1 N LEU T 155 O ALA T 168 SHEET 3 K 4 CYS T 186 VAL T 192 -1 O SER T 188 N TYR T 156 SHEET 4 K 4 GLU T 208 CYS T 209 -1 O GLU T 208 N PHE T 187 SSBOND 1 CYS L 17 CYS L 22 1555 1555 2.03 SSBOND 2 CYS L 50 CYS L 61 1555 1555 2.04 SSBOND 3 CYS L 55 CYS L 70 1555 1555 2.04 SSBOND 4 CYS L 72 CYS L 81 1555 1555 2.05 SSBOND 5 CYS L 91 CYS L 102 1555 1555 2.03 SSBOND 6 CYS L 98 CYS L 112 1555 1555 2.02 SSBOND 7 CYS L 114 CYS L 127 1555 1555 2.05 SSBOND 8 CYS L 135 CYS H 122 1555 1555 2.03 SSBOND 9 CYS H 22 CYS H 27 1555 1555 2.05 SSBOND 10 CYS H 42 CYS H 58 1555 1555 2.02 SSBOND 11 CYS H 168 CYS H 182 1555 1555 2.04 SSBOND 12 CYS H 191 CYS H 220 1555 1555 2.03 SSBOND 13 CYS T 49 CYS T 57 1555 1555 2.08 SSBOND 14 CYS T 186 CYS T 209 1555 1555 2.03 LINK CA CA H 400 O GLU H 75 1555 1555 2.06 LINK CA CA H 400 OE1 GLU H 80 1555 1555 2.57 LINK CA CA H 400 O HOH H 446 1555 1555 2.55 LINK CA CA H 400 O HOH H 508 1555 1555 2.50 LINK CA CA H 400 OE1 GLU H 70 1555 1555 2.34 LINK CA CA H 400 O ASP H 72 1555 1555 2.40 LINK C LEU L 5 N CGU L 6 1555 1555 1.33 LINK C CGU L 6 N CGU L 7 1555 1555 1.33 LINK C CGU L 7 N LEU L 8 1555 1555 1.33 LINK C LEU L 13 N CGU L 14 1555 1555 1.33 LINK C CGU L 14 N ARG L 15 1555 1555 1.33 LINK C ARG L 15 N CGU L 16 1555 1555 1.33 LINK C CGU L 16 N CYS L 17 1555 1555 1.33 LINK C LYS L 18 N CGU L 19 1555 1555 1.33 LINK C CGU L 19 N CGU L 20 1555 1555 1.33 LINK C CGU L 20 N GLN L 21 1555 1555 1.33 LINK C PHE L 24 N CGU L 25 1555 1555 1.33 LINK C CGU L 25 N CGU L 26 1555 1555 1.33 LINK C CGU L 26 N ALA L 27 1555 1555 1.33 LINK C ARG L 28 N CGU L 29 1555 1555 1.33 LINK C CGU L 29 N ILE L 30 1555 1555 1.33 LINK C ALA L 34 N CGU L 35 1555 1555 1.34 LINK C CGU L 35 N ARG L 36 1555 1555 1.33 LINK CA CA L 401 O GLN L 64 1555 1555 2.34 LINK CA CA L 401 OE1 GLN L 49 1555 1555 2.88 LINK CA CA L 401 O GLY L 47 1555 1555 2.78 LINK CA CA L 401 OD1 ASP L 46 1555 1555 2.21 LINK CA CA L 401 OD2 ASP L 63 1555 1555 2.53 LINK MG MG L 402 OE12 CGU L 14 1555 1555 2.27 LINK MG MG L 402 OE21 CGU L 19 1555 1555 2.48 LINK MG MG L 402 OE12 CGU L 19 1555 1555 2.85 LINK MG MG L 402 OE21 CGU L 14 1555 1555 2.73 CISPEP 1 PHE H 256 PRO H 257 0 0.51 CISPEP 2 GLU T 26 PRO T 27 0 -0.49 SITE 1 AC1 6 GLU H 70 ASP H 72 GLU H 75 GLU H 80 SITE 2 AC1 6 HOH H 446 HOH H 508 SITE 1 AC2 5 ASP L 46 GLY L 47 GLN L 49 ASP L 63 SITE 2 AC2 5 GLN L 64 SITE 1 AC3 2 CGU L 14 CGU L 19 SITE 1 AC4 21 HIS H 57 CYS H 58 ASP H 60 TYR H 94 SITE 2 AC4 21 GLY H 97 THR H 98 PRO H 170I ASP H 189 SITE 3 AC4 21 SER H 190 LYS H 192 SER H 195 SER H 214 SITE 4 AC4 21 TRP H 215 GLY H 216 GLN H 217 GLY H 219 SITE 5 AC4 21 CYS H 220 GLY H 226 HOH H 416 HOH H 447 SITE 6 AC4 21 HOH H 544 CRYST1 69.652 81.137 125.577 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014357 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012325 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007963 0.00000