PDB Short entry for 1ZD2 HEADER HYDROLASE 14-APR-05 1ZD2 TITLE HUMAN SOLUBLE EPOXIDE HYDROLASE 4-(3-CYCLOHEXYLURIEDO)-ETHANOIC ACID TITLE 2 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPOXIDE HYDROLASE 2, CYTOPLASMIC; COMPND 3 CHAIN: P; COMPND 4 EC: 3.3.2.3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EPHX2; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: ACHSEH1 KEYWDS DOMAIN-SWAPPED DIMER, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR G.A.GOMEZ,C.MORISSEAU,B.D.HAMMOCK,D.W.CHRISTIANSON REVDAT 3 23-AUG-23 1ZD2 1 REMARK LINK REVDAT 2 24-FEB-09 1ZD2 1 VERSN REVDAT 1 07-MAR-06 1ZD2 0 JRNL AUTH G.A.GOMEZ,C.MORISSEAU,B.D.HAMMOCK,D.W.CHRISTIANSON JRNL TITL HUMAN SOLUBLE EPOXIDE HYDROLASE: STRUCTURAL BASIS OF JRNL TITL 2 INHIBITION BY 4-(3-CYCLOHEXYLUREIDO)-CARBOXYLIC ACIDS JRNL REF PROTEIN SCI. V. 15 58 2006 JRNL REFN ISSN 0961-8368 JRNL PMID 16322563 JRNL DOI 10.1110/PS.051720206 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 12377 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 892 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4331 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 18 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.000 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1ZD2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-APR-05. REMARK 100 THE DEPOSITION ID IS D_1000032587. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-DEC-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : SINGLE CRYSTAL, CYLINDRICALLY REMARK 200 BENT, ASYMMETRICALLY CUT SI(220) REMARK 200 CRYSTAL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12983 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.200 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.30 REMARK 200 R MERGE FOR SHELL (I) : 0.46000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1S8O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, TRIS, N-HEXADECYL-B-D REMARK 280 -MALTOSIDE, PH 8.4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 162.24000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 81.12000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 121.68000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 40.56000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 202.80000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 162.24000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 81.12000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 40.56000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 121.68000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 202.80000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE SECOND PART OF THE BIOLOGICAL ASSEMBLY IS GENERATED BY REMARK 300 THE SYMMETRY_OP=(-X+Y,Y,-Z+1/2) DX=-1 DY= 0 DZ= 0 DISTANCE= 2.007 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -92.24000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 121.68000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET P 1 REMARK 465 PRO P 548 REMARK 465 PRO P 549 REMARK 465 VAL P 550 REMARK 465 VAL P 551 REMARK 465 SER P 552 REMARK 465 LYS P 553 REMARK 465 MET P 554 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C LYS P 160 CD PRO P 161 1.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU P 252 OE1 GLU P 252 11455 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO P 161 C - N - CA ANGL. DEV. = 59.2 DEGREES REMARK 500 PRO P 161 C - N - CD ANGL. DEV. = -52.2 DEGREES REMARK 500 PRO P 161 CA - N - CD ANGL. DEV. = -8.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU P 10 -75.33 -86.33 REMARK 500 VAL P 13 -62.97 -131.81 REMARK 500 ALA P 18 103.60 -38.54 REMARK 500 CYS P 81 -156.85 -134.18 REMARK 500 ASN P 85 36.35 -96.97 REMARK 500 CYS P 154 4.63 -65.92 REMARK 500 PRO P 161 -27.94 114.12 REMARK 500 GLN P 204 -84.82 -105.48 REMARK 500 PRO P 225 -178.30 -59.26 REMARK 500 PRO P 227 174.97 -55.08 REMARK 500 GLU P 267 -148.77 -120.84 REMARK 500 LYS P 292 121.24 -39.12 REMARK 500 GLN P 326 -163.18 -123.47 REMARK 500 ALA P 327 142.56 165.70 REMARK 500 ASP P 333 -127.39 62.59 REMARK 500 ASN P 357 -53.05 73.46 REMARK 500 ASN P 366 -75.53 -85.03 REMARK 500 ALA P 375 42.76 -90.57 REMARK 500 ASN P 376 85.53 -173.62 REMARK 500 PRO P 377 -28.43 -33.55 REMARK 500 TYR P 384 -7.62 -59.25 REMARK 500 GLU P 387 105.75 -59.59 REMARK 500 PHE P 407 86.10 -60.85 REMARK 500 SER P 413 -144.00 33.44 REMARK 500 VAL P 415 6.97 114.61 REMARK 500 HIS P 419 -82.69 -57.41 REMARK 500 VAL P 429 -44.99 -23.53 REMARK 500 LYS P 455 -73.67 -70.86 REMARK 500 LYS P 494 24.01 -77.52 REMARK 500 LEU P 498 64.77 -113.31 REMARK 500 ASP P 520 59.06 36.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR P 341 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG P 800 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP P 9 OD2 REMARK 620 2 ASP P 11 O 62.1 REMARK 620 3 ASP P 184 OD1 69.4 120.9 REMARK 620 4 ASP P 185 OD1 81.3 79.9 60.8 REMARK 620 5 PO4 P 900 O4 67.5 74.2 116.0 146.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG P 800 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 P 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NC3 P 700 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1S8O RELATED DB: PDB REMARK 900 HUMAN SOLUBLE EPOXIDE HYDROLASE REMARK 900 RELATED ID: 1VJ5 RELATED DB: PDB REMARK 900 HUMAN SOLUBLE EPOXIDE HYDROLASE- N-CYCLOHEXYL-N'-(4- IODOPHENYL) REMARK 900 UREA COMPLEX REMARK 900 RELATED ID: 1ZD3 RELATED DB: PDB REMARK 900 HUMAN SOLUBLE EPOXIDE HYDROLASE 4-(3-CYCLOHEXYLURIEDO)-BUTYRIC ACID REMARK 900 COMPLEX REMARK 900 RELATED ID: 1ZD4 RELATED DB: PDB REMARK 900 HUMAN SOLUBLE EPOXIDE HYDROLASE 4-(3-CYCLOHEXYLURIEDO)-HEXANOIC REMARK 900 ACID COMPLEX REMARK 900 RELATED ID: 1ZD5 RELATED DB: PDB REMARK 900 HUMAN SOLUBLE EPOXIDE HYDROLASE 4-(3-CYCLOHEXYLURIEDO)-HEPTANOIC REMARK 900 ACID COMPLEX DBREF 1ZD2 P 1 554 UNP P34913 HYES_HUMAN 1 555 SEQRES 1 P 555 MET THR LEU ARG ALA ALA VAL PHE ASP LEU ASP GLY VAL SEQRES 2 P 555 LEU ALA LEU PRO ALA VAL PHE GLY VAL LEU GLY ARG THR SEQRES 3 P 555 GLU GLU ALA LEU ALA LEU PRO ARG GLY LEU LEU ASN ASP SEQRES 4 P 555 ALA PHE GLN LYS GLY GLY PRO GLU GLY ALA THR THR ARG SEQRES 5 P 555 LEU MET LYS GLY GLU ILE THR LEU SER GLN TRP ILE PRO SEQRES 6 P 555 LEU MET GLU GLU ASN CYS ARG LYS CYS SER GLU THR ALA SEQRES 7 P 555 LYS VAL CYS LEU PRO LYS ASN PHE SER ILE LYS GLU ILE SEQRES 8 P 555 PHE ASP LYS ALA ILE SER ALA ARG LYS ILE ASN ARG PRO SEQRES 9 P 555 MET LEU GLN ALA ALA LEU MET LEU ARG LYS LYS GLY PHE SEQRES 10 P 555 THR THR ALA ILE LEU THR ASN THR TRP LEU ASP ASP ARG SEQRES 11 P 555 ALA GLU ARG ASP GLY LEU ALA GLN LEU MET CYS GLU LEU SEQRES 12 P 555 LYS MET HIS PHE ASP PHE LEU ILE GLU SER CYS GLN VAL SEQRES 13 P 555 GLY MET VAL LYS PRO GLU PRO GLN ILE TYR LYS PHE LEU SEQRES 14 P 555 LEU ASP THR LEU LYS ALA SER PRO SER GLU VAL VAL PHE SEQRES 15 P 555 LEU ASP ASP ILE GLY ALA ASN LEU LYS PRO ALA ARG ASP SEQRES 16 P 555 LEU GLY MET VAL THR ILE LEU VAL GLN ASP THR ASP THR SEQRES 17 P 555 ALA LEU LYS GLU LEU GLU LYS VAL THR GLY ILE GLN LEU SEQRES 18 P 555 LEU ASN THR PRO ALA PRO LEU PRO THR SER CYS ASN PRO SEQRES 19 P 555 SER ASP MET SER HIS GLY TYR VAL THR VAL LYS PRO ARG SEQRES 20 P 555 VAL ARG LEU HIS PHE VAL GLU LEU GLY SER GLY PRO ALA SEQRES 21 P 555 VAL CYS LEU CYS HIS GLY PHE PRO GLU SER TRP TYR SER SEQRES 22 P 555 TRP ARG TYR GLN ILE PRO ALA LEU ALA GLN ALA GLY TYR SEQRES 23 P 555 ARG VAL LEU ALA MET ASP MET LYS GLY TYR GLY GLU SER SEQRES 24 P 555 SER ALA PRO PRO GLU ILE GLU GLU TYR CYS MET GLU VAL SEQRES 25 P 555 LEU CYS LYS GLU MET VAL THR PHE LEU ASP LYS LEU GLY SEQRES 26 P 555 LEU SER GLN ALA VAL PHE ILE GLY HIS ASP TRP GLY GLY SEQRES 27 P 555 MET LEU VAL TRP TYR MET ALA LEU PHE TYR PRO GLU ARG SEQRES 28 P 555 VAL ARG ALA VAL ALA SER LEU ASN THR PRO PHE ILE PRO SEQRES 29 P 555 ALA ASN PRO ASN MET SER PRO LEU GLU SER ILE LYS ALA SEQRES 30 P 555 ASN PRO VAL PHE ASP TYR GLN LEU TYR PHE GLN GLU PRO SEQRES 31 P 555 GLY VAL ALA GLU ALA GLU LEU GLU GLN ASN LEU SER ARG SEQRES 32 P 555 THR PHE LYS SER LEU PHE ARG ALA SER ASP GLU SER VAL SEQRES 33 P 555 LEU SER MET HIS LYS VAL CYS GLU ALA GLY GLY LEU PHE SEQRES 34 P 555 VAL ASN SER PRO GLU GLU PRO SER LEU SER ARG MET VAL SEQRES 35 P 555 THR GLU GLU GLU ILE GLN PHE TYR VAL GLN GLN PHE LYS SEQRES 36 P 555 LYS SER GLY PHE ARG GLY PRO LEU ASN TRP TYR ARG ASN SEQRES 37 P 555 MET GLU ARG ASN TRP LYS TRP ALA CYS LYS SER LEU GLY SEQRES 38 P 555 ARG LYS ILE LEU ILE PRO ALA LEU MET VAL THR ALA GLU SEQRES 39 P 555 LYS ASP PHE VAL LEU VAL PRO GLN MET SER GLN HIS MET SEQRES 40 P 555 GLU ASP TRP ILE PRO HIS LEU LYS ARG GLY HIS ILE GLU SEQRES 41 P 555 ASP CYS GLY HIS TRP THR GLN MET ASP LYS PRO THR GLU SEQRES 42 P 555 VAL ASN GLN ILE LEU ILE LYS TRP LEU ASP SER ASP ALA SEQRES 43 P 555 ARG ASN PRO PRO VAL VAL SER LYS MET HET MG P 800 1 HET PO4 P 900 5 HET NC3 P 700 14 HETNAM MG MAGNESIUM ION HETNAM PO4 PHOSPHATE ION HETNAM NC3 N-[(CYCLOHEXYLAMINO)CARBONYL]GLYCINE HETSYN NC3 4-(3-CYCLOHEXYLURIEDO)-ETHANOIC ACID FORMUL 2 MG MG 2+ FORMUL 3 PO4 O4 P 3- FORMUL 4 NC3 C9 H16 N2 O3 FORMUL 5 HOH *18(H2 O) HELIX 1 1 GLY P 21 LEU P 30 1 10 HELIX 2 2 GLY P 35 GLN P 42 1 8 HELIX 3 3 GLY P 44 GLU P 47 5 4 HELIX 4 4 GLY P 48 LYS P 55 1 8 HELIX 5 5 THR P 59 ALA P 78 1 20 HELIX 6 6 SER P 87 ARG P 99 1 13 HELIX 7 7 ASN P 102 LYS P 115 1 14 HELIX 8 8 ARG P 133 LYS P 144 1 12 HELIX 9 9 MET P 145 PHE P 147 5 3 HELIX 10 10 SER P 153 GLY P 157 1 5 HELIX 11 11 GLU P 162 LYS P 174 1 13 HELIX 12 12 SER P 176 SER P 178 5 3 HELIX 13 13 LEU P 190 LEU P 196 1 7 HELIX 14 14 ASP P 205 GLY P 218 1 14 HELIX 15 15 ASN P 231 MET P 235 5 5 HELIX 16 16 SER P 268 ARG P 273 5 6 HELIX 17 17 TYR P 274 ALA P 282 1 9 HELIX 18 18 ILE P 303 TYR P 306 5 4 HELIX 19 19 CYS P 307 GLY P 323 1 17 HELIX 20 20 ASP P 333 TYR P 346 1 14 HELIX 21 21 PRO P 347 VAL P 350 5 4 HELIX 22 22 SER P 368 ALA P 375 1 8 HELIX 23 23 ASN P 376 VAL P 378 5 3 HELIX 24 24 PHE P 379 TYR P 384 1 6 HELIX 25 25 GLY P 389 ASN P 398 1 10 HELIX 26 26 ASN P 398 PHE P 407 1 10 HELIX 27 27 LYS P 420 GLY P 425 1 6 HELIX 28 28 THR P 442 GLY P 457 1 16 HELIX 29 29 PHE P 458 ASN P 463 1 6 HELIX 30 30 TRP P 464 ARG P 466 5 3 HELIX 31 31 ASN P 467 CYS P 476 1 10 HELIX 32 32 LYS P 477 LEU P 479 5 3 HELIX 33 33 VAL P 499 GLN P 504 5 6 HELIX 34 34 HIS P 505 TRP P 509 5 5 HELIX 35 35 TRP P 524 LYS P 529 1 6 HELIX 36 36 LYS P 529 ALA P 545 1 17 SHEET 1 A 5 PHE P 149 GLU P 152 0 SHEET 2 A 5 THR P 118 THR P 123 1 N THR P 123 O ILE P 151 SHEET 3 A 5 ALA P 5 PHE P 8 1 N PHE P 8 O ALA P 120 SHEET 4 A 5 VAL P 180 ASP P 184 1 O VAL P 181 N ALA P 5 SHEET 5 A 5 VAL P 199 LEU P 202 1 O VAL P 199 N PHE P 182 SHEET 1 B 2 ALA P 15 LEU P 16 0 SHEET 2 B 2 LYS P 100 ILE P 101 -1 O LYS P 100 N LEU P 16 SHEET 1 C 8 SER P 236 LYS P 243 0 SHEET 2 C 8 VAL P 246 GLY P 254 -1 O PHE P 250 N GLY P 238 SHEET 3 C 8 ARG P 285 ASP P 290 -1 O ALA P 288 N VAL P 251 SHEET 4 C 8 ALA P 258 CYS P 262 1 N VAL P 259 O LEU P 287 SHEET 5 C 8 VAL P 328 HIS P 332 1 O VAL P 328 N CYS P 260 SHEET 6 C 8 ALA P 352 LEU P 356 1 O ALA P 354 N GLY P 331 SHEET 7 C 8 ALA P 487 ALA P 492 1 O VAL P 490 N SER P 355 SHEET 8 C 8 LYS P 514 ILE P 518 1 O GLY P 516 N THR P 491 LINK OD2 ASP P 9 MG MG P 800 1555 1555 2.49 LINK O ASP P 11 MG MG P 800 1555 1555 2.83 LINK OD1 ASP P 184 MG MG P 800 1555 1555 3.10 LINK OD1 ASP P 185 MG MG P 800 1555 1555 2.11 LINK MG MG P 800 O4 PO4 P 900 1555 1555 2.15 CISPEP 1 LEU P 16 PRO P 17 0 2.55 CISPEP 2 PHE P 265 PRO P 266 0 -0.02 SITE 1 AC1 5 ASP P 9 ASP P 11 ASP P 184 ASP P 185 SITE 2 AC1 5 PO4 P 900 SITE 1 AC2 6 ASP P 9 ASP P 11 THR P 123 ASN P 124 SITE 2 AC2 6 LYS P 160 MG P 800 SITE 1 AC3 9 PHE P 265 ASP P 333 TRP P 334 MET P 337 SITE 2 AC3 9 TYR P 381 MET P 418 TYR P 465 VAL P 497 SITE 3 AC3 9 HIS P 523 CRYST1 92.240 92.240 243.360 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010841 0.006259 0.000000 0.00000 SCALE2 0.000000 0.012518 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004109 0.00000