PDB Short entry for 1ZDU HEADER TRANSCRIPTION 14-APR-05 1ZDU TITLE THE CRYSTAL STRUCTURE OF HUMAN LIVER RECEPTOR HOMOLOGUE-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ORPHAN NUCLEAR RECEPTOR NR5A2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ALPHA-1-FETOPROTEIN TRANSCRIPTION FACTOR, HEPATOCYTIC COMPND 5 TRANSCRIPTION FACTOR, B1-BINDING FACTOR, HB1F, CYP7A PROMOTER BINDING COMPND 6 FACTOR; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: NUCLEAR RECEPTOR COACTIVATOR 2; COMPND 10 CHAIN: P, Q; COMPND 11 FRAGMENT: RESIDUES 741-751; COMPND 12 SYNONYM: NCOA-2, TRANSCRIPTIONAL INTERMEDIARY FACTOR 2; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMANS. KEYWDS LIVER RECEPTOR HOMOLOGUE-1, LRH-1, NUCLEAR RECEPTOR, PHOSPHOLIPID, KEYWDS 2 PHOSPHATIDYLETHANOLAMINE, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR W.WANG,C.ZHANG,A.MARIMUTHU,H.I.KRUPKA,M.TABRIZIZAD,R.SHELLOE,U.MEHRA, AUTHOR 2 K.ENG,H.NGUYEN,C.SETTACHATGUL,B.POWELL,M.V.MILBURN,B.L.WEST REVDAT 5 14-FEB-24 1ZDU 1 REMARK REVDAT 4 13-JUL-11 1ZDU 1 VERSN REVDAT 3 24-FEB-09 1ZDU 1 VERSN REVDAT 2 01-JUN-05 1ZDU 1 JRNL REVDAT 1 24-MAY-05 1ZDU 0 JRNL AUTH W.WANG,C.ZHANG,A.MARIMUTHU,H.I.KRUPKA,M.TABRIZIZAD, JRNL AUTH 2 R.SHELLOE,U.MEHRA,K.ENG,H.NGUYEN,C.SETTACHATGUL,B.POWELL, JRNL AUTH 3 M.V.MILBURN,B.L.WEST JRNL TITL THE CRYSTAL STRUCTURES OF HUMAN STEROIDOGENIC FACTOR-1 AND JRNL TITL 2 LIVER RECEPTOR HOMOLOGUE-1 JRNL REF PROC.NATL.ACAD.SCI.USA V. 102 7505 2005 JRNL REFN ISSN 0027-8424 JRNL PMID 15897460 JRNL DOI 10.1073/PNAS.0409482102 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.25 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 10899 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.242 REMARK 3 R VALUE (WORKING SET) : 0.239 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 595 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 777 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3310 REMARK 3 BIN FREE R VALUE SET COUNT : 32 REMARK 3 BIN FREE R VALUE : 0.3490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2069 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 35 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 65.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.28000 REMARK 3 B22 (A**2) : -2.04000 REMARK 3 B33 (A**2) : 3.32000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.603 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.320 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.272 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.874 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2167 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2021 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2913 ; 1.034 ; 1.999 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4722 ; 0.722 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 250 ; 5.261 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 328 ; 0.053 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2298 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 405 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 507 ; 0.179 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2284 ; 0.192 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1324 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 39 ; 0.164 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 10 ; 0.153 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 53 ; 0.136 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.372 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1268 ; 0.203 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2037 ; 0.396 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 899 ; 0.729 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 876 ; 1.213 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 5 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 253 A 284 REMARK 3 RESIDUE RANGE : A 292 A 492 REMARK 3 RESIDUE RANGE : A 101 A 101 REMARK 3 RESIDUE RANGE : A 103 A 103 REMARK 3 RESIDUE RANGE : A 1 A 26 REMARK 3 ORIGIN FOR THE GROUP (A): 6.5570 28.9030 9.4730 REMARK 3 T TENSOR REMARK 3 T11: 0.2196 T22: 0.2025 REMARK 3 T33: 0.1271 T12: -0.1156 REMARK 3 T13: 0.0150 T23: -0.0164 REMARK 3 L TENSOR REMARK 3 L11: 4.1042 L22: 4.8604 REMARK 3 L33: 3.3226 L12: -1.0404 REMARK 3 L13: -1.2019 L23: 2.1420 REMARK 3 S TENSOR REMARK 3 S11: 0.0552 S12: 0.4310 S13: 0.2096 REMARK 3 S21: -0.2874 S22: 0.1482 S23: 0.0435 REMARK 3 S31: -0.1607 S32: 0.1279 S33: -0.2034 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 27 A 30 REMARK 3 ORIGIN FOR THE GROUP (A): 1.8830 13.9510 10.3950 REMARK 3 T TENSOR REMARK 3 T11: 0.3899 T22: 0.3846 REMARK 3 T33: 0.3917 T12: -0.0069 REMARK 3 T13: -0.0080 T23: -0.0028 REMARK 3 L TENSOR REMARK 3 L11: 13.3866 L22: 8.4652 REMARK 3 L33: 2.3797 L12: 16.5096 REMARK 3 L13: 20.9657 L23: 6.5128 REMARK 3 S TENSOR REMARK 3 S11: -0.2123 S12: 3.4380 S13: -2.4695 REMARK 3 S21: 0.4630 S22: 0.0037 S23: 0.3701 REMARK 3 S31: -0.4595 S32: 1.3261 S33: 0.2086 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : P 741 P 751 REMARK 3 RESIDUE RANGE : P 31 P 33 REMARK 3 ORIGIN FOR THE GROUP (A): 25.2440 24.0090 10.7780 REMARK 3 T TENSOR REMARK 3 T11: 0.3312 T22: 0.3836 REMARK 3 T33: 0.1885 T12: -0.1248 REMARK 3 T13: 0.0035 T23: -0.2482 REMARK 3 L TENSOR REMARK 3 L11: 27.0359 L22: 12.8898 REMARK 3 L33: 3.0488 L12: -11.5308 REMARK 3 L13: 6.9418 L23: 9.7576 REMARK 3 S TENSOR REMARK 3 S11: -0.1796 S12: -0.7811 S13: 0.0328 REMARK 3 S21: 0.0981 S22: 0.6418 S23: -0.9020 REMARK 3 S31: 0.3258 S32: 0.3699 S33: -0.4622 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : Q 742 Q 751 REMARK 3 RESIDUE RANGE : Q 34 Q 34 REMARK 3 ORIGIN FOR THE GROUP (A): 2.0970 14.6320 -9.7540 REMARK 3 T TENSOR REMARK 3 T11: 0.3641 T22: 0.7886 REMARK 3 T33: 0.3224 T12: 0.0231 REMARK 3 T13: -0.0287 T23: -0.3737 REMARK 3 L TENSOR REMARK 3 L11: 12.2712 L22: 36.0604 REMARK 3 L33: 29.0357 L12: 8.7367 REMARK 3 L13: -1.5182 L23: -6.3934 REMARK 3 S TENSOR REMARK 3 S11: 0.2279 S12: -0.5890 S13: 0.3514 REMARK 3 S21: -0.2928 S22: -0.1347 S23: -0.9119 REMARK 3 S31: -1.2806 S32: 0.5486 S33: -0.0932 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1ZDU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-APR-05. REMARK 100 THE DEPOSITION ID IS D_1000032607. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUN-04 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.11587 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10899 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.01247 REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NAH2PO4, K2HPO4, PH 7.5, TEMPERATURE REMARK 280 293K, VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.50500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.10500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.50000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.10500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.50500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.50000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P, Q REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 251 REMARK 465 PRO A 252 REMARK 465 ALA A 285 REMARK 465 ASN A 286 REMARK 465 ARG A 287 REMARK 465 SER A 288 REMARK 465 LYS A 289 REMARK 465 HIS A 290 REMARK 465 GLU A 291 REMARK 465 LYS A 493 REMARK 465 ARG A 494 REMARK 465 ALA A 495 REMARK 465 GLU Q 741 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 19 O HOH A 20 3545 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 283 -4.59 -59.70 REMARK 500 LEU A 293 142.39 -31.32 REMARK 500 LYS A 353 -155.98 -127.16 REMARK 500 SER A 356 109.59 -165.94 REMARK 500 GLN A 396 53.05 37.85 REMARK 500 TYR A 482 96.44 -46.19 REMARK 500 ASN A 483 144.42 48.04 REMARK 500 ASN A 484 -169.53 -166.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P3A A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS A 103 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ZDT RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN STEROIDOGENIC FACTOR-1 DBREF 1ZDU A 251 495 UNP O00482 NR5A2_HUMAN 297 541 DBREF 1ZDU P 741 751 UNP Q15596 NCOA2_HUMAN 741 751 DBREF 1ZDU Q 741 751 UNP Q15596 NCOA2_HUMAN 741 751 SEQRES 1 A 245 SER PRO ALA SER ILE PRO HIS LEU ILE LEU GLU LEU LEU SEQRES 2 A 245 LYS CYS GLU PRO ASP GLU PRO GLN VAL GLN ALA LYS ILE SEQRES 3 A 245 MET ALA TYR LEU GLN GLN GLU GLN ALA ASN ARG SER LYS SEQRES 4 A 245 HIS GLU LYS LEU SER THR PHE GLY LEU MET CYS LYS MET SEQRES 5 A 245 ALA ASP GLN THR LEU PHE SER ILE VAL GLU TRP ALA ARG SEQRES 6 A 245 SER SER ILE PHE PHE ARG GLU LEU LYS VAL ASP ASP GLN SEQRES 7 A 245 MET LYS LEU LEU GLN ASN CYS TRP SER GLU LEU LEU ILE SEQRES 8 A 245 LEU ASP HIS ILE TYR ARG GLN VAL VAL HIS GLY LYS GLU SEQRES 9 A 245 GLY SER ILE PHE LEU VAL THR GLY GLN GLN VAL ASP TYR SEQRES 10 A 245 SER ILE ILE ALA SER GLN ALA GLY ALA THR LEU ASN ASN SEQRES 11 A 245 LEU MET SER HIS ALA GLN GLU LEU VAL ALA LYS LEU ARG SEQRES 12 A 245 SER LEU GLN PHE ASP GLN ARG GLU PHE VAL CYS LEU LYS SEQRES 13 A 245 PHE LEU VAL LEU PHE SER LEU ASP VAL LYS ASN LEU GLU SEQRES 14 A 245 ASN PHE GLN LEU VAL GLU GLY VAL GLN GLU GLN VAL ASN SEQRES 15 A 245 ALA ALA LEU LEU ASP TYR THR MET CYS ASN TYR PRO GLN SEQRES 16 A 245 GLN THR GLU LYS PHE GLY GLN LEU LEU LEU ARG LEU PRO SEQRES 17 A 245 GLU ILE ARG ALA ILE SER MET GLN ALA GLU GLU TYR LEU SEQRES 18 A 245 TYR TYR LYS HIS LEU ASN GLY ASP VAL PRO TYR ASN ASN SEQRES 19 A 245 LEU LEU ILE GLU MET LEU HIS ALA LYS ARG ALA SEQRES 1 P 11 GLU ASN ALA LEU LEU ARG TYR LEU LEU ASP LYS SEQRES 1 Q 11 GLU ASN ALA LEU LEU ARG TYR LEU LEU ASP LYS HET P3A A 101 58 HET TRS A 103 8 HETNAM P3A PHOSPHATIDYLGLYCEROL-PHOSPHOGLYCEROL HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN TRS TRIS BUFFER FORMUL 4 P3A C41 H78 O15 P2 2- FORMUL 5 TRS C4 H12 N O3 1+ FORMUL 6 HOH *35(H2 O) HELIX 1 1 PRO A 256 LYS A 264 1 9 HELIX 2 2 ASP A 268 GLU A 283 1 16 HELIX 3 3 SER A 294 SER A 316 1 23 HELIX 4 4 PHE A 319 LEU A 323 5 5 HELIX 5 5 LYS A 324 HIS A 351 1 28 HELIX 6 6 TYR A 367 ALA A 374 1 8 HELIX 7 7 GLY A 375 SER A 394 1 20 HELIX 8 8 ASP A 398 PHE A 411 1 14 HELIX 9 9 ASN A 420 TYR A 443 1 24 HELIX 10 10 GLU A 448 LEU A 455 1 8 HELIX 11 11 LEU A 455 ASN A 477 1 23 HELIX 12 12 ASN A 484 HIS A 491 1 8 HELIX 13 13 ASN P 742 LYS P 751 1 10 HELIX 14 14 ASN Q 742 LYS Q 751 1 10 SHEET 1 A 2 SER A 356 PHE A 358 0 SHEET 2 A 2 GLN A 364 ASP A 366 -1 O VAL A 365 N ILE A 357 SITE 1 AC1 21 HOH A 19 HOH A 30 THR A 295 PHE A 296 SITE 2 AC1 21 MET A 299 LEU A 340 HIS A 344 ILE A 370 SITE 3 AC1 21 GLN A 373 GLY A 375 ALA A 376 THR A 377 SITE 4 AC1 21 LEU A 378 MET A 382 GLN A 428 ASN A 432 SITE 5 AC1 21 LEU A 454 TYR A 470 LEU A 471 TYR A 473 SITE 6 AC1 21 LYS A 474 SITE 1 AC2 4 PRO A 267 SER A 309 ASP A 343 LYS A 406 CRYST1 61.010 67.000 78.210 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016391 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014925 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012786 0.00000