PDB Short entry for 1ZKK HEADER TRANSFERASE 03-MAY-05 1ZKK TITLE CRYSTAL STRUCTURE OF HSET8 IN TERNARY COMPLEX WITH H4 PEPTIDE (16-24) TITLE 2 AND ADOHCY COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE, H4 LYSINE-20 SPECIFIC; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 231-393; COMPND 5 SYNONYM: HISTONE H4-K20 METHYLTRANSFERASE, H4-K20-HMTASE, SET DOMAIN- COMPND 6 CONTAINING PROTEIN 8, PR/SET DOMAIN-CONTAINING PROTEIN 07, PR/SET07, COMPND 7 PR-SET7, SET8; COMPND 8 EC: 2.1.1.43; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: PEPTIDE CORRESPONDING TO RESIDUES 15-24 OF HISTONE H4; COMPND 12 CHAIN: E, F, G, H; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SET8, PRSET7, SET07; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL-21-DE3PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PHIS2; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: CHAIN E, F, G, H ARE SYNTHETIC PEPTIDE FROM NEW SOURCE 14 ENGLAND PEPTIDE CORRESPONDING TO RESIDUE 15-24 OF THE HISTONE H4 KEYWDS PSEUDO-KNOT, HISTONE H4, BETA-SHEET, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.-F.COUTURE,E.COLLAZO,J.S.BRUNZELLE,R.C.TRIEVEL REVDAT 5 14-FEB-24 1ZKK 1 REMARK SEQADV REVDAT 4 11-OCT-17 1ZKK 1 REMARK REVDAT 3 24-FEB-09 1ZKK 1 VERSN REVDAT 2 05-JUL-05 1ZKK 1 JRNL REVDAT 1 07-JUN-05 1ZKK 0 JRNL AUTH J.-F.COUTURE,E.COLLAZO,J.S.BRUNZELLE,R.C.TRIEVEL JRNL TITL STRUCTURAL AND FUNCTIONAL ANALYSIS OF SET8, A HISTONE H4 JRNL TITL 2 LYS-20 METHYLTRANSFERASE JRNL REF GENES DEV. V. 19 1455 2005 JRNL REFN ISSN 0890-9369 JRNL PMID 15933070 JRNL DOI 10.1101/GAD.1318405 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 117760 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6198 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 8436 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2060 REMARK 3 BIN FREE R VALUE SET COUNT : 444 REMARK 3 BIN FREE R VALUE : 0.2580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5424 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 104 REMARK 3 SOLVENT ATOMS : 1007 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : 0.04000 REMARK 3 B12 (A**2) : 0.03000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.083 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.069 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.038 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.134 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5632 ; 0.008 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7554 ; 1.278 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 668 ; 6.092 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 276 ;27.573 ;23.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1054 ;11.594 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 52 ;15.900 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 806 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4196 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2548 ; 0.191 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3806 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 835 ; 0.115 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 85 ; 0.165 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 91 ; 0.096 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3470 ; 0.986 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5344 ; 1.518 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2478 ; 2.162 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2210 ; 3.174 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5948 ; 1.228 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 1008 ; 4.016 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 5536 ; 2.540 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1ZKK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000032824. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-OCT-04 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 32-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686, 0.9792, 0.9791 REMARK 200 MONOCHROMATOR : DIAMOND 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 122425 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 22.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 32.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 34.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD, MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PENTAERYTHRITOL ETHOXYLATE, AMMONIUM REMARK 280 SULFATE, BIS-TRIS, PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 186 REMARK 465 ALA A 187 REMARK 465 MET A 188 REMARK 465 GLY A 189 REMARK 465 SER A 190 REMARK 465 SER A 191 REMARK 465 ARG A 192 REMARK 465 GLY B 186 REMARK 465 ALA B 187 REMARK 465 MET B 188 REMARK 465 GLY B 189 REMARK 465 SER B 190 REMARK 465 SER B 191 REMARK 465 GLY C 186 REMARK 465 ALA C 187 REMARK 465 MET C 188 REMARK 465 GLY C 189 REMARK 465 SER C 190 REMARK 465 SER C 191 REMARK 465 ARG C 192 REMARK 465 GLY D 186 REMARK 465 ALA D 187 REMARK 465 MET D 188 REMARK 465 GLY D 189 REMARK 465 SER D 190 REMARK 465 SER D 191 REMARK 465 ALA E 15 REMARK 465 ASP E 24 REMARK 465 ALA F 15 REMARK 465 ALA G 15 REMARK 465 ALA H 15 REMARK 465 ASP H 24 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 192 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 192 CG CD NE CZ NH1 NH2 REMARK 470 LYS E 16 CG CD CE NZ REMARK 470 LYS F 16 CB CG CD CE NZ REMARK 470 LYS G 16 CG CD CE NZ REMARK 470 LYS H 16 CB CG CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 SER A 200 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C HIS A 352 O HOH A 3006 1.68 REMARK 500 O HOH A 3014 O HOH C 2935 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 302 CB CYS A 302 SG 1.459 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 302 CA - CB - SG ANGL. DEV. = 16.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL B 242 -60.66 -104.14 REMARK 500 LEU B 278 -122.21 53.96 REMARK 500 VAL C 242 -63.79 -105.40 REMARK 500 ALA D 286 31.78 -98.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH A 2800 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH B 2801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH C 2802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH D 2803 DBREF 1ZKK A 190 352 UNP Q9NQR1 SET07_HUMAN 231 393 DBREF 1ZKK B 190 352 UNP Q9NQR1 SET07_HUMAN 231 393 DBREF 1ZKK C 190 352 UNP Q9NQR1 SET07_HUMAN 231 393 DBREF 1ZKK D 190 352 UNP Q9NQR1 SET07_HUMAN 231 393 DBREF 1ZKK E 15 24 PDB 1ZKK 1ZKK 15 24 DBREF 1ZKK F 15 24 PDB 1ZKK 1ZKK 15 24 DBREF 1ZKK G 15 24 PDB 1ZKK 1ZKK 15 24 DBREF 1ZKK H 15 24 PDB 1ZKK 1ZKK 15 24 SEQADV 1ZKK GLY A 186 UNP Q9NQR1 CLONING ARTIFACT SEQADV 1ZKK ALA A 187 UNP Q9NQR1 CLONING ARTIFACT SEQADV 1ZKK MET A 188 UNP Q9NQR1 CLONING ARTIFACT SEQADV 1ZKK GLY A 189 UNP Q9NQR1 CLONING ARTIFACT SEQADV 1ZKK GLY B 186 UNP Q9NQR1 CLONING ARTIFACT SEQADV 1ZKK ALA B 187 UNP Q9NQR1 CLONING ARTIFACT SEQADV 1ZKK MET B 188 UNP Q9NQR1 CLONING ARTIFACT SEQADV 1ZKK GLY B 189 UNP Q9NQR1 CLONING ARTIFACT SEQADV 1ZKK GLY C 186 UNP Q9NQR1 CLONING ARTIFACT SEQADV 1ZKK ALA C 187 UNP Q9NQR1 CLONING ARTIFACT SEQADV 1ZKK MET C 188 UNP Q9NQR1 CLONING ARTIFACT SEQADV 1ZKK GLY C 189 UNP Q9NQR1 CLONING ARTIFACT SEQADV 1ZKK GLY D 186 UNP Q9NQR1 CLONING ARTIFACT SEQADV 1ZKK ALA D 187 UNP Q9NQR1 CLONING ARTIFACT SEQADV 1ZKK MET D 188 UNP Q9NQR1 CLONING ARTIFACT SEQADV 1ZKK GLY D 189 UNP Q9NQR1 CLONING ARTIFACT SEQRES 1 A 167 GLY ALA MET GLY SER SER ARG LYS SER LYS ALA GLU LEU SEQRES 2 A 167 GLN SER GLU GLU ARG LYS ARG ILE ASP GLU LEU ILE GLU SEQRES 3 A 167 SER GLY LYS GLU GLU GLY MET LYS ILE ASP LEU ILE ASP SEQRES 4 A 167 GLY LYS GLY ARG GLY VAL ILE ALA THR LYS GLN PHE SER SEQRES 5 A 167 ARG GLY ASP PHE VAL VAL GLU TYR HIS GLY ASP LEU ILE SEQRES 6 A 167 GLU ILE THR ASP ALA LYS LYS ARG GLU ALA LEU TYR ALA SEQRES 7 A 167 GLN ASP PRO SER THR GLY CYS TYR MET TYR TYR PHE GLN SEQRES 8 A 167 TYR LEU SER LYS THR TYR CYS VAL ASP ALA THR ARG GLU SEQRES 9 A 167 THR ASN ARG LEU GLY ARG LEU ILE ASN HIS SER LYS CYS SEQRES 10 A 167 GLY ASN CYS GLN THR LYS LEU HIS ASP ILE ASP GLY VAL SEQRES 11 A 167 PRO HIS LEU ILE LEU ILE ALA SER ARG ASP ILE ALA ALA SEQRES 12 A 167 GLY GLU GLU LEU LEU TYR ASP TYR GLY ASP ARG SER LYS SEQRES 13 A 167 ALA SER ILE GLU ALA HIS PRO TRP LEU LYS HIS SEQRES 1 B 167 GLY ALA MET GLY SER SER ARG LYS SER LYS ALA GLU LEU SEQRES 2 B 167 GLN SER GLU GLU ARG LYS ARG ILE ASP GLU LEU ILE GLU SEQRES 3 B 167 SER GLY LYS GLU GLU GLY MET LYS ILE ASP LEU ILE ASP SEQRES 4 B 167 GLY LYS GLY ARG GLY VAL ILE ALA THR LYS GLN PHE SER SEQRES 5 B 167 ARG GLY ASP PHE VAL VAL GLU TYR HIS GLY ASP LEU ILE SEQRES 6 B 167 GLU ILE THR ASP ALA LYS LYS ARG GLU ALA LEU TYR ALA SEQRES 7 B 167 GLN ASP PRO SER THR GLY CYS TYR MET TYR TYR PHE GLN SEQRES 8 B 167 TYR LEU SER LYS THR TYR CYS VAL ASP ALA THR ARG GLU SEQRES 9 B 167 THR ASN ARG LEU GLY ARG LEU ILE ASN HIS SER LYS CYS SEQRES 10 B 167 GLY ASN CYS GLN THR LYS LEU HIS ASP ILE ASP GLY VAL SEQRES 11 B 167 PRO HIS LEU ILE LEU ILE ALA SER ARG ASP ILE ALA ALA SEQRES 12 B 167 GLY GLU GLU LEU LEU TYR ASP TYR GLY ASP ARG SER LYS SEQRES 13 B 167 ALA SER ILE GLU ALA HIS PRO TRP LEU LYS HIS SEQRES 1 C 167 GLY ALA MET GLY SER SER ARG LYS SER LYS ALA GLU LEU SEQRES 2 C 167 GLN SER GLU GLU ARG LYS ARG ILE ASP GLU LEU ILE GLU SEQRES 3 C 167 SER GLY LYS GLU GLU GLY MET LYS ILE ASP LEU ILE ASP SEQRES 4 C 167 GLY LYS GLY ARG GLY VAL ILE ALA THR LYS GLN PHE SER SEQRES 5 C 167 ARG GLY ASP PHE VAL VAL GLU TYR HIS GLY ASP LEU ILE SEQRES 6 C 167 GLU ILE THR ASP ALA LYS LYS ARG GLU ALA LEU TYR ALA SEQRES 7 C 167 GLN ASP PRO SER THR GLY CYS TYR MET TYR TYR PHE GLN SEQRES 8 C 167 TYR LEU SER LYS THR TYR CYS VAL ASP ALA THR ARG GLU SEQRES 9 C 167 THR ASN ARG LEU GLY ARG LEU ILE ASN HIS SER LYS CYS SEQRES 10 C 167 GLY ASN CYS GLN THR LYS LEU HIS ASP ILE ASP GLY VAL SEQRES 11 C 167 PRO HIS LEU ILE LEU ILE ALA SER ARG ASP ILE ALA ALA SEQRES 12 C 167 GLY GLU GLU LEU LEU TYR ASP TYR GLY ASP ARG SER LYS SEQRES 13 C 167 ALA SER ILE GLU ALA HIS PRO TRP LEU LYS HIS SEQRES 1 D 167 GLY ALA MET GLY SER SER ARG LYS SER LYS ALA GLU LEU SEQRES 2 D 167 GLN SER GLU GLU ARG LYS ARG ILE ASP GLU LEU ILE GLU SEQRES 3 D 167 SER GLY LYS GLU GLU GLY MET LYS ILE ASP LEU ILE ASP SEQRES 4 D 167 GLY LYS GLY ARG GLY VAL ILE ALA THR LYS GLN PHE SER SEQRES 5 D 167 ARG GLY ASP PHE VAL VAL GLU TYR HIS GLY ASP LEU ILE SEQRES 6 D 167 GLU ILE THR ASP ALA LYS LYS ARG GLU ALA LEU TYR ALA SEQRES 7 D 167 GLN ASP PRO SER THR GLY CYS TYR MET TYR TYR PHE GLN SEQRES 8 D 167 TYR LEU SER LYS THR TYR CYS VAL ASP ALA THR ARG GLU SEQRES 9 D 167 THR ASN ARG LEU GLY ARG LEU ILE ASN HIS SER LYS CYS SEQRES 10 D 167 GLY ASN CYS GLN THR LYS LEU HIS ASP ILE ASP GLY VAL SEQRES 11 D 167 PRO HIS LEU ILE LEU ILE ALA SER ARG ASP ILE ALA ALA SEQRES 12 D 167 GLY GLU GLU LEU LEU TYR ASP TYR GLY ASP ARG SER LYS SEQRES 13 D 167 ALA SER ILE GLU ALA HIS PRO TRP LEU LYS HIS SEQRES 1 E 10 ALA LYS ARG HIS ARG LYS VAL LEU ARG ASP SEQRES 1 F 10 ALA LYS ARG HIS ARG LYS VAL LEU ARG ASP SEQRES 1 G 10 ALA LYS ARG HIS ARG LYS VAL LEU ARG ASP SEQRES 1 H 10 ALA LYS ARG HIS ARG LYS VAL LEU ARG ASP HET SAH A2800 26 HET SAH B2801 26 HET SAH C2802 26 HET SAH D2803 26 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE FORMUL 9 SAH 4(C14 H20 N6 O5 S) FORMUL 13 HOH *1007(H2 O) HELIX 1 1 SER A 194 GLY A 213 1 20 HELIX 2 2 ILE A 252 ALA A 263 1 12 HELIX 3 3 LEU A 293 ILE A 297 5 5 HELIX 4 4 SER A 340 HIS A 347 1 8 HELIX 5 5 PRO A 348 HIS A 352 5 5 HELIX 6 6 SER B 194 GLY B 213 1 20 HELIX 7 7 ILE B 252 ALA B 263 1 12 HELIX 8 8 LEU B 293 ILE B 297 5 5 HELIX 9 9 SER B 340 HIS B 347 1 8 HELIX 10 10 PRO B 348 HIS B 352 5 5 HELIX 11 11 SER C 194 GLY C 213 1 20 HELIX 12 12 ILE C 252 ALA C 263 1 12 HELIX 13 13 LEU C 293 ILE C 297 5 5 HELIX 14 14 SER C 340 HIS C 347 1 8 HELIX 15 15 PRO C 348 HIS C 352 5 5 HELIX 16 16 SER D 194 GLY D 213 1 20 HELIX 17 17 ILE D 252 ALA D 263 1 12 HELIX 18 18 LEU D 293 ILE D 297 5 5 HELIX 19 19 SER D 340 HIS D 347 1 8 HELIX 20 20 PRO D 348 HIS D 352 5 5 SHEET 1 A 2 MET A 218 ILE A 223 0 SHEET 2 A 2 GLY A 227 ALA A 232 -1 O ILE A 231 N LYS A 219 SHEET 1 B 3 PHE A 241 TYR A 245 0 SHEET 2 B 3 VAL A 315 ALA A 322 -1 O LEU A 320 N VAL A 243 SHEET 3 B 3 CYS A 305 ILE A 312 -1 N HIS A 310 O HIS A 317 SHEET 1 C 4 ASP A 248 GLU A 251 0 SHEET 2 C 4 LYS A 280 ASP A 285 -1 O ASP A 285 N ASP A 248 SHEET 3 C 4 MET A 272 TYR A 277 -1 N PHE A 275 O TYR A 282 SHEET 4 C 4 LYS E 20 VAL E 21 1 O LYS E 20 N TYR A 274 SHEET 1 D 2 ASN A 298 HIS A 299 0 SHEET 2 D 2 LEU A 333 TYR A 334 1 O TYR A 334 N ASN A 298 SHEET 1 E 2 MET B 218 ILE B 223 0 SHEET 2 E 2 GLY B 227 ALA B 232 -1 O ILE B 231 N LYS B 219 SHEET 1 F 3 PHE B 241 GLU B 244 0 SHEET 2 F 3 VAL B 315 ALA B 322 -1 O LEU B 320 N VAL B 243 SHEET 3 F 3 CYS B 305 ILE B 312 -1 N LYS B 308 O ILE B 319 SHEET 1 G 4 ASP B 248 GLU B 251 0 SHEET 2 G 4 LYS B 280 ASP B 285 -1 O ASP B 285 N ASP B 248 SHEET 3 G 4 MET B 272 TYR B 277 -1 N PHE B 275 O TYR B 282 SHEET 4 G 4 LYS F 20 VAL F 21 1 O LYS F 20 N TYR B 274 SHEET 1 H 2 ASN B 298 HIS B 299 0 SHEET 2 H 2 LEU B 333 TYR B 334 1 O TYR B 334 N ASN B 298 SHEET 1 I 2 MET C 218 ILE C 223 0 SHEET 2 I 2 GLY C 227 ALA C 232 -1 O ILE C 231 N LYS C 219 SHEET 1 J 3 PHE C 241 GLU C 244 0 SHEET 2 J 3 VAL C 315 ALA C 322 -1 O LEU C 320 N VAL C 243 SHEET 3 J 3 CYS C 305 ILE C 312 -1 N HIS C 310 O HIS C 317 SHEET 1 K 4 ASP C 248 GLU C 251 0 SHEET 2 K 4 LYS C 280 ASP C 285 -1 O ASP C 285 N ASP C 248 SHEET 3 K 4 MET C 272 TYR C 277 -1 N PHE C 275 O TYR C 282 SHEET 4 K 4 LYS G 20 VAL G 21 1 O LYS G 20 N TYR C 274 SHEET 1 L 2 ASN C 298 HIS C 299 0 SHEET 2 L 2 LEU C 333 TYR C 334 1 O TYR C 334 N ASN C 298 SHEET 1 M 2 MET D 218 ILE D 223 0 SHEET 2 M 2 GLY D 227 ALA D 232 -1 O ILE D 231 N LYS D 219 SHEET 1 N 3 PHE D 241 TYR D 245 0 SHEET 2 N 3 VAL D 315 ALA D 322 -1 O LEU D 318 N TYR D 245 SHEET 3 N 3 CYS D 305 ILE D 312 -1 N HIS D 310 O HIS D 317 SHEET 1 O 4 ASP D 248 GLU D 251 0 SHEET 2 O 4 LYS D 280 ASP D 285 -1 O ASP D 285 N ASP D 248 SHEET 3 O 4 MET D 272 TYR D 277 -1 N PHE D 275 O TYR D 282 SHEET 4 O 4 LYS H 20 VAL H 21 1 O LYS H 20 N TYR D 274 SHEET 1 P 2 ASN D 298 HIS D 299 0 SHEET 2 P 2 LEU D 333 TYR D 334 1 O TYR D 334 N ASN D 298 SITE 1 AC1 20 GLY A 225 LYS A 226 ARG A 228 CYS A 270 SITE 2 AC1 20 TYR A 271 ARG A 295 LEU A 296 ASN A 298 SITE 3 AC1 20 HIS A 299 TYR A 336 TRP A 349 HOH A2829 SITE 4 AC1 20 HOH A2835 HOH A2863 HOH A2879 HOH A2901 SITE 5 AC1 20 HOH A2906 HIS E 18 LYS E 20 HOH G 186 SITE 1 AC2 19 GLY B 225 LYS B 226 ARG B 228 CYS B 270 SITE 2 AC2 19 TYR B 271 ARG B 295 LEU B 296 ASN B 298 SITE 3 AC2 19 HIS B 299 TYR B 336 TRP B 349 HOH B2825 SITE 4 AC2 19 HOH B2856 HOH B2862 HOH B2875 HOH B2898 SITE 5 AC2 19 HOH B2902 HIS F 18 LYS F 20 SITE 1 AC3 18 GLY C 225 LYS C 226 ARG C 228 CYS C 270 SITE 2 AC3 18 TYR C 271 ARG C 295 LEU C 296 ASN C 298 SITE 3 AC3 18 HIS C 299 TYR C 336 TRP C 349 HOH C2831 SITE 4 AC3 18 HOH C2841 HOH C2908 HOH C2921 HOH C2928 SITE 5 AC3 18 HIS G 18 LYS G 20 SITE 1 AC4 20 HOH B2806 GLY D 225 LYS D 226 ARG D 228 SITE 2 AC4 20 CYS D 270 TYR D 271 ARG D 295 LEU D 296 SITE 3 AC4 20 ASN D 298 HIS D 299 TYR D 336 TRP D 349 SITE 4 AC4 20 HOH D2810 HOH D2826 HOH D2878 HOH D2889 SITE 5 AC4 20 HOH D2892 ARG F 23 HIS H 18 LYS H 20 CRYST1 43.960 45.775 94.435 89.22 87.07 90.72 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022748 0.000287 -0.001167 0.00000 SCALE2 0.000000 0.021848 -0.000313 0.00000 SCALE3 0.000000 0.000000 0.010604 0.00000