PDB Short entry for 1ZN5 HEADER VIRUS 11-MAY-05 1ZN5 TITLE SOLID STATE NMR STRUCTURE OF THE LOW-TEMPERATURE FORM OF THE PF1 MAJOR TITLE 2 COAT PROTEIN IN MAGNETICALLY ALIGNED BACTERIOPHAGE COMPND MOL_ID: 1; COMPND 2 MOLECULE: COAT PROTEIN B; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MAJOR COAT PROTEIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PHAGE PF1; SOURCE 3 ORGANISM_TAXID: 10871; SOURCE 4 OTHER_DETAILS: HOST BACTERIA IS PSEUDOMONAS AERUGINOSA. KEYWDS ALPHA-HELIX, VIRION, ORIENTATIONAL CONSTRAINTS, HELICAL VIRUS, VIRUS EXPDTA SOLID-STATE NMR NUMMDL 27 AUTHOR D.S.THIRIOT,A.A.NEVZOROV,S.J.OPELLA REVDAT 3 02-MAR-22 1ZN5 1 REMARK REVDAT 2 24-FEB-09 1ZN5 1 VERSN REVDAT 1 17-MAY-05 1ZN5 0 JRNL AUTH D.S.THIRIOT,A.A.NEVZOROV,S.J.OPELLA JRNL TITL STRUCTURAL BASIS OF THE TEMPERATURE TRANSITION OF PF1 JRNL TITL 2 BACTERIOPHAGE. JRNL REF PROTEIN SCI. V. 14 1064 2005 JRNL REFN ISSN 0961-8368 JRNL PMID 15741342 JRNL DOI 10.1110/PS.041220305 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 2.2, SCWRL REMARK 3 AUTHORS : BOWER ET AL. (SCWRL) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THIS IS A BACKBONE ONLY MODEL. CONSTANT PEPTIDE PLANE REMARK 3 GEOMETRY WAS ASSUMED. TORSION ANGLES PHI AND PSI WERE REMARK 3 ALLOWED TO VARY WITHIN 10-20 DEGREES RELATIVE TO PHI=-65, REMARK 3 PSI=-40. RADIAL AND ANGULAR POSITIONING OF SUBUNITS IN A REMARK 3 MANNER SIMILAR TO AND IN COMPARISON WITH STRUCTURE 1PJF, REMARK 3 WHICH INVOLVED MINIMIZATION AGAINST PUBLISHED NEUTRON REMARK 3 DIFFRACTION DISTANCE CONSTRAINTS AND ENERGY MINIMIZATION REMARK 3 WITH SIDECHAINS USING THE PROGRAM SCWRL. REMARK 4 REMARK 4 1ZN5 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000032916. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 273 REMARK 210 PH : 8 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : APPROXIMATELY 50 MG/ML PF1 REMARK 210 BACTERIOPHAGE, U-15N REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : PISEMA REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX 2000.1, MATLAB SCRIPTS 1.0 REMARK 210 METHOD USED : DETERMINATION OF TORSION ANGLES REMARK 210 BETWEEN ADJACENT RESIDUES USING REMARK 210 SOLID-STATE NMR FREQUENCIES REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 27 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURAL FITTING OF PISEMA REMARK 210 SPECTRUM WITH FIXED PEPTIDE REMARK 210 PLANE GEOMETRY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: MODEL 1 IS THE BASIC SOLID-STATE NMR STRUCTURE (NO REMARK 210 SIDECHAINS), WHILE MODELS 2-27 ARE IDENTICAL TRANSLATED REMARK 210 AND ROTATED COPIES OF MODEL 1 INCLUDED TO PRESENT THE REMARK 210 MODEL OF THE WHOLE BACTERIOPHAGE ASSEMBLY. REMARK 217 REMARK 217 SOLID STATE NMR STUDY REMARK 217 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLID REMARK 217 STATE NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 217 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 217 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O MET A 42 H ALA A 46 1.54 REMARK 500 O ASP A 4 N SER A 6 1.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 5 -47.12 -0.05 REMARK 500 1 SER A 6 -70.01 -59.61 REMARK 500 2 THR A 5 -47.18 -0.02 REMARK 500 2 SER A 6 -70.05 -59.53 REMARK 500 3 THR A 5 -47.12 -0.05 REMARK 500 4 THR A 5 -47.10 -0.07 REMARK 500 4 SER A 6 -70.00 -59.61 REMARK 500 5 THR A 5 -47.15 -0.04 REMARK 500 6 THR A 5 -47.13 -0.03 REMARK 500 7 THR A 5 -47.16 -0.04 REMARK 500 8 THR A 5 -47.09 -0.08 REMARK 500 8 SER A 6 -70.01 -59.62 REMARK 500 9 THR A 5 -47.13 -0.09 REMARK 500 9 SER A 6 -70.03 -59.59 REMARK 500 10 THR A 5 -47.13 -0.02 REMARK 500 11 THR A 5 -47.15 -0.05 REMARK 500 12 THR A 5 -47.17 -0.07 REMARK 500 13 THR A 5 -47.09 -0.11 REMARK 500 14 THR A 5 -47.13 -0.07 REMARK 500 14 SER A 6 -70.02 -59.56 REMARK 500 15 THR A 5 -47.11 -0.11 REMARK 500 15 SER A 6 -70.02 -59.55 REMARK 500 16 THR A 5 -47.12 -0.05 REMARK 500 17 THR A 5 -47.15 -0.04 REMARK 500 17 SER A 6 -70.00 -59.59 REMARK 500 18 THR A 5 -47.18 -0.03 REMARK 500 19 THR A 5 -47.06 -0.11 REMARK 500 20 THR A 5 -47.17 -0.03 REMARK 500 21 THR A 5 -47.18 -0.04 REMARK 500 22 THR A 5 -47.09 -0.09 REMARK 500 23 THR A 5 -47.15 -0.04 REMARK 500 23 SER A 6 -70.05 -59.57 REMARK 500 24 THR A 5 -47.17 -0.09 REMARK 500 24 SER A 6 -70.01 -59.56 REMARK 500 25 THR A 5 -47.14 -0.07 REMARK 500 25 SER A 6 -70.01 -59.56 REMARK 500 26 THR A 5 -47.16 -0.06 REMARK 500 27 THR A 5 -47.08 -0.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1PJF RELATED DB: PDB REMARK 900 SOLID STATE NMR STRUCTURE OF THE HIGH TEMPERATURE (303 K) FORM OF REMARK 900 THE PF1 MAJOR COAT PROTEIN IN MAGNETICALLY ALIGNED BACTERIOPHAGE DBREF 1ZN5 A 1 46 UNP P03621 COATB_BPPF1 37 82 SEQRES 1 A 46 GLY VAL ILE ASP THR SER ALA VAL GLU SER ALA ILE THR SEQRES 2 A 46 ASP GLY GLN GLY ASP MET LYS ALA ILE GLY GLY TYR ILE SEQRES 3 A 46 VAL GLY ALA LEU VAL ILE LEU ALA VAL ALA GLY LEU ILE SEQRES 4 A 46 TYR SER MET LEU ARG LYS ALA HELIX 1 1 ASP A 4 ALA A 46 1 43 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000