PDB Short entry for 1ZP7 HEADER DNA BINDING PROTEIN 16-MAY-05 1ZP7 TITLE THE STRUCTURE OF BACILLUS SUBTILIS RECU HOLLIDAY JUNCTION RESOLVASE TITLE 2 AND ITS ROLE IN SUBSTRATE SELECTION AND SEQUENCE SPECIFIC CLEAVAGE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: RECOMBINATION PROTEIN U; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PENICILLIN-BINDING PROTEIN-RELATED FACTOR A, PBP RELATED COMPND 5 FACTOR A, RECU SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 STRAIN: PLYSS KEYWDS RECOMBINATION, DNA-BINDING PROTEIN, RESOLVASE, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.MCGREGOR,S.AYORA,S.SEDELNIKOVA,B.CARRASCO,J.C.ALONSO,P.THAW, AUTHOR 2 J.RAFFERTY REVDAT 3 14-FEB-24 1ZP7 1 REMARK REVDAT 2 24-FEB-09 1ZP7 1 VERSN REVDAT 1 20-SEP-05 1ZP7 0 JRNL AUTH N.MCGREGOR,S.AYORA,S.SEDELNIKOVA,B.CARRASCO,J.C.ALONSO, JRNL AUTH 2 P.THAW,J.RAFFERTY JRNL TITL THE STRUCTURE OF BACILLUS SUBTILIS RECU HOLLIDAY JUNCTION JRNL TITL 2 RESOLVASE AND ITS ROLE IN SUBSTRATE SELECTION AND JRNL TITL 3 SEQUENCE-SPECIFIC CLEAVAGE. JRNL REF STRUCTURE V. 13 1341 2005 JRNL REFN ISSN 0969-2126 JRNL PMID 16154091 JRNL DOI 10.1016/J.STR.2005.05.011 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.07 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 21485 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1127 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.40 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1544 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.39 REMARK 3 BIN R VALUE (WORKING SET) : 0.2100 REMARK 3 BIN FREE R VALUE SET COUNT : 83 REMARK 3 BIN FREE R VALUE : 0.2700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2538 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 163 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.250 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.219 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.167 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.712 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2596 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3509 ; 1.320 ; 1.943 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 304 ; 6.336 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 132 ;38.383 ;24.848 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 448 ;16.805 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;23.308 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 375 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1979 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1179 ; 0.214 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1777 ; 0.314 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 166 ; 0.191 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 22 ; 0.198 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.249 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1580 ; 0.934 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2487 ; 1.742 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1173 ; 1.890 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1022 ; 2.971 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1ZP7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000032980. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUL-04; NULL REMARK 200 TEMPERATURE (KELVIN) : 100; NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; NULL REMARK 200 RADIATION SOURCE : SRS; NULL REMARK 200 BEAMLINE : PX14.1; NULL REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.97; 1.54 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE; NULL REMARK 200 DETECTOR MANUFACTURER : RIGAKU; NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22690 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 19.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 102.31067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.15533 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 76.73300 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 25.57767 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 127.88833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER IN THE ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ILE A 2 REMARK 465 ARG A 3 REMARK 465 TYR A 4 REMARK 465 PRO A 5 REMARK 465 ASN A 6 REMARK 465 GLY A 7 REMARK 465 LYS A 8 REMARK 465 THR A 9 REMARK 465 PHE A 10 REMARK 465 GLN A 11 REMARK 465 PRO A 12 REMARK 465 LYS A 13 REMARK 465 HIS A 14 REMARK 465 SER A 15 REMARK 465 VAL A 16 REMARK 465 SER A 17 REMARK 465 SER A 18 REMARK 465 GLN A 19 REMARK 465 ASN A 20 REMARK 465 SER A 21 REMARK 465 GLN A 22 REMARK 465 LYS A 23 REMARK 465 ARG A 24 REMARK 465 ALA A 25 REMARK 465 PRO A 26 REMARK 465 SER A 27 REMARK 465 TYR A 28 REMARK 465 SER A 29 REMARK 465 ASN A 30 REMARK 465 ARG A 31 REMARK 465 GLY A 32 REMARK 465 MET A 33 REMARK 465 VAL A 66 REMARK 465 HIS A 67 REMARK 465 TYR A 68 REMARK 465 PRO A 69 REMARK 465 LYS A 70 REMARK 465 ARG A 71 REMARK 465 SER A 72 REMARK 465 ALA A 73 REMARK 465 ALA A 74 REMARK 465 VAL A 75 REMARK 465 ILE A 76 REMARK 465 LYS A 77 REMARK 465 GLU A 78 REMARK 465 PRO A 200 REMARK 465 SER A 201 REMARK 465 SER A 202 REMARK 465 GLY A 203 REMARK 465 ALA A 204 REMARK 465 LYS A 205 REMARK 465 GLY A 206 REMARK 465 MET B 1 REMARK 465 ILE B 2 REMARK 465 ARG B 3 REMARK 465 TYR B 4 REMARK 465 PRO B 5 REMARK 465 ASN B 6 REMARK 465 GLY B 7 REMARK 465 LYS B 8 REMARK 465 THR B 9 REMARK 465 PHE B 10 REMARK 465 GLN B 11 REMARK 465 PRO B 12 REMARK 465 LYS B 13 REMARK 465 HIS B 14 REMARK 465 SER B 15 REMARK 465 VAL B 16 REMARK 465 SER B 17 REMARK 465 SER B 18 REMARK 465 GLN B 19 REMARK 465 ASN B 20 REMARK 465 SER B 21 REMARK 465 GLN B 22 REMARK 465 LYS B 23 REMARK 465 ARG B 24 REMARK 465 ALA B 25 REMARK 465 PRO B 26 REMARK 465 SER B 27 REMARK 465 TYR B 28 REMARK 465 SER B 29 REMARK 465 ASN B 30 REMARK 465 ARG B 31 REMARK 465 GLY B 32 REMARK 465 MET B 33 REMARK 465 VAL B 64 REMARK 465 ASN B 65 REMARK 465 VAL B 66 REMARK 465 HIS B 67 REMARK 465 TYR B 68 REMARK 465 PRO B 69 REMARK 465 LYS B 70 REMARK 465 ARG B 71 REMARK 465 SER B 72 REMARK 465 ALA B 73 REMARK 465 ALA B 74 REMARK 465 VAL B 75 REMARK 465 SER B 201 REMARK 465 SER B 202 REMARK 465 GLY B 203 REMARK 465 ALA B 204 REMARK 465 LYS B 205 REMARK 465 GLY B 206 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 65 CG OD1 ND2 REMARK 470 LYS A 82 CG CD CE NZ REMARK 470 SER A 199 OG REMARK 470 ILE B 76 CG1 CG2 CD1 REMARK 470 LYS B 77 CD CE NZ REMARK 470 GLN B 114 CG CD OE1 NE2 REMARK 470 ARG B 158 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 161 CD CE NZ REMARK 470 ASN B 162 CG OD1 ND2 REMARK 470 ARG B 164 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 170 CG OD1 OD2 REMARK 470 GLU B 171 CG CD OE1 OE2 REMARK 470 GLU B 173 CG CD OE1 OE2 REMARK 470 ASP B 188 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 84 CB - CA - C ANGL. DEV. = 12.1 DEGREES REMARK 500 ARG A 168 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 61 -155.72 -122.52 REMARK 500 SER A 84 162.97 107.55 REMARK 500 GLN A 114 2.19 -67.27 REMARK 500 ASP A 142 11.11 57.19 REMARK 500 ARG A 158 0.57 -68.97 REMARK 500 LYS A 161 44.68 -151.65 REMARK 500 ASN A 162 -148.92 -103.83 REMARK 500 GLU B 78 -118.18 -117.13 REMARK 500 GLU B 160 33.55 -94.24 REMARK 500 LYS B 161 -41.27 -160.59 REMARK 500 ASN B 162 -128.89 -110.36 REMARK 500 ARG B 164 -107.87 -142.72 REMARK 500 LYS B 169 -54.09 -27.64 REMARK 500 SER B 199 75.58 -161.79 REMARK 500 REMARK 500 REMARK: NULL DBREF 1ZP7 A 1 206 UNP P39792 RECU_BACSU 1 206 DBREF 1ZP7 B 1 206 UNP P39792 RECU_BACSU 1 206 SEQRES 1 A 206 MET ILE ARG TYR PRO ASN GLY LYS THR PHE GLN PRO LYS SEQRES 2 A 206 HIS SER VAL SER SER GLN ASN SER GLN LYS ARG ALA PRO SEQRES 3 A 206 SER TYR SER ASN ARG GLY MET THR LEU GLU ASP ASP LEU SEQRES 4 A 206 ASN GLU THR ASN LYS TYR TYR LEU THR ASN GLN ILE ALA SEQRES 5 A 206 VAL ILE HIS LYS LYS PRO THR PRO VAL GLN ILE VAL ASN SEQRES 6 A 206 VAL HIS TYR PRO LYS ARG SER ALA ALA VAL ILE LYS GLU SEQRES 7 A 206 ALA TYR PHE LYS GLN SER SER THR THR ASP TYR ASN GLY SEQRES 8 A 206 ILE TYR LYS GLY ARG TYR ILE ASP PHE GLU ALA LYS GLU SEQRES 9 A 206 THR LYS ASN LYS THR SER PHE PRO LEU GLN ASN PHE HIS SEQRES 10 A 206 ASP HIS GLN ILE GLU HIS MET LYS GLN VAL LYS ALA GLN SEQRES 11 A 206 ASP GLY ILE CYS PHE VAL ILE ILE SER ALA PHE ASP GLN SEQRES 12 A 206 VAL TYR PHE LEU GLU ALA ASP LYS LEU PHE TYR PHE TRP SEQRES 13 A 206 ASP ARG LYS GLU LYS ASN GLY ARG LYS SER ILE ARG LYS SEQRES 14 A 206 ASP GLU LEU GLU GLU THR ALA TYR PRO ILE SER LEU GLY SEQRES 15 A 206 TYR ALA PRO ARG ILE ASP TYR ILE SER ILE ILE GLU GLN SEQRES 16 A 206 LEU TYR PHE SER PRO SER SER GLY ALA LYS GLY SEQRES 1 B 206 MET ILE ARG TYR PRO ASN GLY LYS THR PHE GLN PRO LYS SEQRES 2 B 206 HIS SER VAL SER SER GLN ASN SER GLN LYS ARG ALA PRO SEQRES 3 B 206 SER TYR SER ASN ARG GLY MET THR LEU GLU ASP ASP LEU SEQRES 4 B 206 ASN GLU THR ASN LYS TYR TYR LEU THR ASN GLN ILE ALA SEQRES 5 B 206 VAL ILE HIS LYS LYS PRO THR PRO VAL GLN ILE VAL ASN SEQRES 6 B 206 VAL HIS TYR PRO LYS ARG SER ALA ALA VAL ILE LYS GLU SEQRES 7 B 206 ALA TYR PHE LYS GLN SER SER THR THR ASP TYR ASN GLY SEQRES 8 B 206 ILE TYR LYS GLY ARG TYR ILE ASP PHE GLU ALA LYS GLU SEQRES 9 B 206 THR LYS ASN LYS THR SER PHE PRO LEU GLN ASN PHE HIS SEQRES 10 B 206 ASP HIS GLN ILE GLU HIS MET LYS GLN VAL LYS ALA GLN SEQRES 11 B 206 ASP GLY ILE CYS PHE VAL ILE ILE SER ALA PHE ASP GLN SEQRES 12 B 206 VAL TYR PHE LEU GLU ALA ASP LYS LEU PHE TYR PHE TRP SEQRES 13 B 206 ASP ARG LYS GLU LYS ASN GLY ARG LYS SER ILE ARG LYS SEQRES 14 B 206 ASP GLU LEU GLU GLU THR ALA TYR PRO ILE SER LEU GLY SEQRES 15 B 206 TYR ALA PRO ARG ILE ASP TYR ILE SER ILE ILE GLU GLN SEQRES 16 B 206 LEU TYR PHE SER PRO SER SER GLY ALA LYS GLY FORMUL 3 HOH *163(H2 O) HELIX 1 1 THR A 34 ASN A 49 1 16 HELIX 2 2 GLN A 114 PHE A 116 5 3 HELIX 3 3 HIS A 117 GLN A 130 1 14 HELIX 4 4 ALA A 149 ARG A 158 1 10 HELIX 5 5 LYS A 159 LYS A 161 5 3 HELIX 6 6 LYS A 169 ALA A 176 1 8 HELIX 7 7 ASP A 188 PHE A 198 1 11 HELIX 8 8 THR B 34 ASN B 49 1 16 HELIX 9 9 GLN B 114 PHE B 116 5 3 HELIX 10 10 HIS B 117 GLN B 130 1 14 HELIX 11 11 ALA B 149 ARG B 158 1 10 HELIX 12 12 LYS B 169 ALA B 176 1 8 HELIX 13 13 ASP B 188 PHE B 198 1 11 SHEET 1 A 6 VAL A 53 LYS A 56 0 SHEET 2 A 6 TYR A 89 TYR A 93 -1 O ASN A 90 N HIS A 55 SHEET 3 A 6 ARG A 96 GLU A 104 -1 O ILE A 98 N GLY A 91 SHEET 4 A 6 ILE A 133 ALA A 140 1 O ILE A 137 N GLU A 101 SHEET 5 A 6 GLN A 143 GLU A 148 -1 O TYR A 145 N ILE A 138 SHEET 6 A 6 TYR A 177 PRO A 178 -1 O TYR A 177 N PHE A 146 SHEET 1 B 2 SER A 110 PRO A 112 0 SHEET 2 B 2 SER A 166 ARG A 168 -1 O ILE A 167 N PHE A 111 SHEET 1 C 6 VAL B 53 LYS B 56 0 SHEET 2 C 6 TYR B 89 TYR B 93 -1 O ILE B 92 N VAL B 53 SHEET 3 C 6 ARG B 96 GLU B 104 -1 O ILE B 98 N GLY B 91 SHEET 4 C 6 ILE B 133 ALA B 140 1 O SER B 139 N LYS B 103 SHEET 5 C 6 GLN B 143 GLU B 148 -1 O TYR B 145 N ILE B 138 SHEET 6 C 6 TYR B 177 PRO B 178 -1 O TYR B 177 N PHE B 146 SHEET 1 D 2 VAL B 61 GLN B 62 0 SHEET 2 D 2 TYR B 80 PHE B 81 -1 O TYR B 80 N GLN B 62 SHEET 1 E 2 SER B 110 PRO B 112 0 SHEET 2 E 2 SER B 166 ARG B 168 -1 O ILE B 167 N PHE B 111 CISPEP 1 ILE A 63 VAL A 64 0 -2.19 CISPEP 2 LYS A 161 ASN A 162 0 15.70 CISPEP 3 ALA A 184 PRO A 185 0 1.02 CISPEP 4 ARG B 164 LYS B 165 0 -14.84 CISPEP 5 ALA B 184 PRO B 185 0 -1.45 CRYST1 74.340 74.340 153.466 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013452 0.007766 0.000000 0.00000 SCALE2 0.000000 0.015533 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006516 0.00000