PDB Short entry for 1ZQU HEADER NUCLEOTIDYLTRANSFERASE 19-APR-96 1ZQU TITLE DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7), 31-KD DOMAIN; SOAKED IN THE TITLE 2 PRESENCE OF ARTIFICIAL MOTHER LIQUOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE BETA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL 31-KD DOMAIN (RESIDUES 88 - 335); COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: SOAKED IN THE PRESENCE OF ARTIFICIAL MOTHER LIQUOR SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: POL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_GENE: POL KEYWDS DNA-DIRECTED DNA POLYMERASE, DNA REPLICATION, DNA REPAIR, KEYWDS 2 NUCLEOTIDYLTRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.PELLETIER,M.R.SAWAYA REVDAT 3 09-AUG-23 1ZQU 1 REMARK REVDAT 2 24-FEB-09 1ZQU 1 VERSN REVDAT 1 15-NOV-96 1ZQU 0 JRNL AUTH H.PELLETIER,M.R.SAWAYA JRNL TITL CHARACTERIZATION OF THE METAL ION BINDING JRNL TITL 2 HELIX-HAIRPIN-HELIX MOTIFS IN HUMAN DNA POLYMERASE BETA BY JRNL TITL 3 X-RAY STRUCTURAL ANALYSIS. JRNL REF BIOCHEMISTRY V. 35 12778 1996 JRNL REFN ISSN 0006-2960 JRNL PMID 8841120 JRNL DOI 10.1021/BI960790I REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.R.SAWAYA,T.RAWSON,S.H.WILSON,J.KRAUT,H.PELLETIER REMARK 1 TITL CRYSTAL STRUCTURES OF HUMAN DNA POLYMERASE BETA COMPLEXED REMARK 1 TITL 2 WITH NICKED AND GAPPED DNA SUBSTRATES REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 1 REFERENCE 2 REMARK 1 AUTH H.PELLETIER REMARK 1 TITL THE ROLE OF THUMB MOVEMENT AND TEMPLATE BENDING IN REMARK 1 TITL 2 POLYMERASE FIDELITY REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 1 REFERENCE 3 REMARK 1 AUTH H.PELLETIER,M.R.SAWAYA,W.WOLFLE,S.H.WILSON,J.KRAUT REMARK 1 TITL CRYSTAL STRUCTURES OF HUMAN DNA POLYMERASE BETA COMPLEXED REMARK 1 TITL 2 WITH DNA; IMPLICATIONS FOR CATALYTIC MECHANISM, REMARK 1 TITL 3 PROCESSIVITY, AND FIDELITY REMARK 1 REF BIOCHEMISTRY V. 35 12742 1996 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 4 REMARK 1 AUTH H.PELLETIER,M.R.SAWAYA,W.WOLFLE,S.H.WILSON,J.KRAUT REMARK 1 TITL A STRUCTURAL BASIS FOR METAL ION MUTAGENICITY AND NUCLEOTIDE REMARK 1 TITL 2 SELECTIVITY IN HUMAN DNA POLYMERASE BETA REMARK 1 REF BIOCHEMISTRY V. 35 12762 1996 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 5 REMARK 1 AUTH H.PELLETIER,M.R.SAWAYA REMARK 1 TITL CHARACTERIZATION OF THE METAL ION-BINDING HHH MOTIFS IN REMARK 1 TITL 2 HUMAN DNA POLYMERASE BETA BY X-RAY STRUCTURAL ANALYSIS REMARK 1 REF BIOCHEMISTRY V. 35 12778 1996 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 6 REMARK 1 AUTH H.PELLETIER REMARK 1 TITL POLYMERASE STRUCTURES AND MECHANISM REMARK 1 REF SCIENCE V. 266 2025 1994 REMARK 1 REFN ISSN 0036-8075 REMARK 1 REFERENCE 7 REMARK 1 AUTH H.PELLETIER,M.R.SAWAYA,A.KUMAR,S.H.WILSON,J.KRAUT REMARK 1 TITL STRUCTURES OF TERNARY COMPLEXES OF RAT DNA POLYMERASE BETA, REMARK 1 TITL 2 A DNA TEMPLATE-PRIMER, AND DDCTP REMARK 1 REF SCIENCE V. 264 1891 1994 REMARK 1 REFN ISSN 0036-8075 REMARK 1 REFERENCE 8 REMARK 1 AUTH M.R.SAWAYA,H.PELLETIER,A.KUMAR,S.H.WILSON,J.KRAUT REMARK 1 TITL CRYSTAL STRUCTURE OF RAT DNA POLYMERASE BETA: EVIDENCE FOR A REMARK 1 TITL 2 COMMON POLYMERASE MECHANISM REMARK 1 REF SCIENCE V. 264 1930 1994 REMARK 1 REFN ISSN 0036-8075 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT 5-D REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 9098 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.1980 REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1924 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 105 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.018 ; 0.020 ; 1977 REMARK 3 BOND ANGLES (DEGREES) : 2.600 ; 3.000 ; 2655 REMARK 3 TORSION ANGLES (DEGREES) : 22.000; NULL ; 1190 REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : 0.022 ; 0.020 ; 54 REMARK 3 GENERAL PLANES (A) : 0.008 ; 0.020 ; 287 REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : 5.500 ; 6.000 ; 1977 REMARK 3 NON-BONDED CONTACTS (A) : 0.024 ; 0.020 ; 101 REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : MOEWS AND KRETSINGER (STANDARD TNT) REMARK 3 KSOL : 0.80 REMARK 3 BSOL : 322.2 REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : STANDARD TNT REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1ZQU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000177523. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-FEB-96 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH2R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE(002) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : XUONG-HAMLIN MULTIWIRE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SDMS REMARK 200 DATA SCALING SOFTWARE : SDMS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9098 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.15900 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: DIFFERENCE FOURIER REMARK 200 SOFTWARE USED: TNT V. 5-D REMARK 200 STARTING MODEL: 1BPB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THIS ENTRY DESCRIBES THE STRUCTURE REMARK 280 THAT RESULTED WHEN A CRYSTAL OF THE C-TERMINAL 31-KD DOMAIN OF REMARK 280 RAT DNA POL BETA (SEE ENTRY 1BPB AND REFERENCE 9) HAD BEEN REMARK 280 SOAKED IN THE FOLLOWING SOLUTION FOR 24 HOURS: PEG 3350, 16% REMARK 280 IMIDAZOLE, 100 MILLIMOLAR, PH 6.5 SEE REFERENCE 3 FOR DETAILS REMARK 280 CONCERNING EXPERIMENTAL PROCEDURES, RESULTS, AND DISCUSSION FOR REMARK 280 THIS STRUCTURE. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 60.39250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.62750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 60.39250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.62750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 441 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 468 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 PLEASE NOTE THAT THIS ENTRY IS ONLY THE 31 KD DOMAIN REMARK 400 (RESIDUES 88 - 335) AND THE N-TERMINAL 8 KD DOMAIN IS NOT REMARK 400 PRESENT IN THIS STRUCTURE. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 88 REMARK 465 ARG A 89 REMARK 465 GLN A 90 REMARK 465 ASP A 246 REMARK 465 GLU A 247 REMARK 465 ASN A 248 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 91 CG OD1 OD2 REMARK 470 ASP A 92 CG OD1 OD2 REMARK 470 SER A 109 OG REMARK 470 ILE A 119 CG1 CG2 CD1 REMARK 470 GLU A 123 CG CD OE1 OE2 REMARK 470 LYS A 131 CG CD CE NZ REMARK 470 LYS A 220 CD CE NZ REMARK 470 SER A 243 OG REMARK 470 GLU A 244 CG CD OE1 OE2 REMARK 470 ASN A 245 CG OD1 ND2 REMARK 470 LYS A 280 CG CD CE NZ REMARK 470 VAL A 303 CG1 CG2 REMARK 470 THR A 304 OG1 CG2 REMARK 470 VAL A 306 CG1 CG2 REMARK 470 ARG A 326 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 129 CD GLU A 129 OE1 0.068 REMARK 500 GLU A 216 CD GLU A 216 OE1 0.072 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 96 N - CA - CB ANGL. DEV. = 9.8 DEGREES REMARK 500 ARG A 112 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ASP A 130 CB - CG - OD1 ANGL. DEV. = -6.7 DEGREES REMARK 500 PRO A 151 C - N - CD ANGL. DEV. = -14.8 DEGREES REMARK 500 ARG A 152 N - CA - CB ANGL. DEV. = 12.3 DEGREES REMARK 500 ARG A 182 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ASP A 190 CB - CG - OD1 ANGL. DEV. = 7.1 DEGREES REMARK 500 ASP A 192 CB - CG - OD1 ANGL. DEV. = -7.8 DEGREES REMARK 500 ASP A 192 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 213 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG A 213 NE - CZ - NH2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ASP A 226 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG A 253 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 253 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ILE A 260 CB - CA - C ANGL. DEV. = -13.0 DEGREES REMARK 500 TYR A 266 CB - CG - CD1 ANGL. DEV. = -3.6 DEGREES REMARK 500 ASP A 276 CB - CG - OD1 ANGL. DEV. = -6.8 DEGREES REMARK 500 ARG A 299 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 PRO A 310 C - N - CD ANGL. DEV. = -16.0 DEGREES REMARK 500 ASP A 314 CB - CG - OD1 ANGL. DEV. = -6.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 120 -63.50 -131.14 REMARK 500 THR A 121 -169.44 -76.27 REMARK 500 GLU A 144 -70.60 -56.42 REMARK 500 ASP A 145 -38.79 -36.55 REMARK 500 ASP A 170 102.75 -177.60 REMARK 500 PRO A 171 -5.42 -57.31 REMARK 500 CYS A 178 -143.23 -94.04 REMARK 500 SER A 202 -8.39 -50.64 REMARK 500 SER A 204 -86.68 -56.65 REMARK 500 SER A 205 77.19 71.02 REMARK 500 LYS A 206 57.10 156.48 REMARK 500 ARG A 222 12.71 85.24 REMARK 500 GLN A 240 136.54 -171.30 REMARK 500 ASP A 263 4.21 -69.48 REMARK 500 SER A 275 -179.19 -68.63 REMARK 500 ALA A 286 -36.82 -39.45 REMARK 500 LEU A 301 -143.88 -80.07 REMARK 500 THR A 304 -24.27 76.26 REMARK 500 VAL A 306 92.85 -53.64 REMARK 500 GLU A 309 85.91 128.14 REMARK 500 PRO A 310 129.61 -36.06 REMARK 500 GLN A 324 73.29 40.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ZQV RELATED DB: PDB REMARK 900 RELATED ID: 1ZQW RELATED DB: PDB REMARK 900 RELATED ID: 1ZQX RELATED DB: PDB REMARK 900 RELATED ID: 1ZQY RELATED DB: PDB REMARK 900 RELATED ID: 1ZQZ RELATED DB: PDB DBREF 1ZQU A 88 335 UNP P06766 DPOB_RAT 87 334 SEQRES 1 A 248 ILE ARG GLN ASP ASP THR SER SER SER ILE ASN PHE LEU SEQRES 2 A 248 THR ARG VAL THR GLY ILE GLY PRO SER ALA ALA ARG LYS SEQRES 3 A 248 LEU VAL ASP GLU GLY ILE LYS THR LEU GLU ASP LEU ARG SEQRES 4 A 248 LYS ASN GLU ASP LYS LEU ASN HIS HIS GLN ARG ILE GLY SEQRES 5 A 248 LEU LYS TYR PHE GLU ASP PHE GLU LYS ARG ILE PRO ARG SEQRES 6 A 248 GLU GLU MET LEU GLN MET GLN ASP ILE VAL LEU ASN GLU SEQRES 7 A 248 VAL LYS LYS LEU ASP PRO GLU TYR ILE ALA THR VAL CYS SEQRES 8 A 248 GLY SER PHE ARG ARG GLY ALA GLU SER SER GLY ASP MET SEQRES 9 A 248 ASP VAL LEU LEU THR HIS PRO ASN PHE THR SER GLU SER SEQRES 10 A 248 SER LYS GLN PRO LYS LEU LEU HIS ARG VAL VAL GLU GLN SEQRES 11 A 248 LEU GLN LYS VAL ARG PHE ILE THR ASP THR LEU SER LYS SEQRES 12 A 248 GLY GLU THR LYS PHE MET GLY VAL CYS GLN LEU PRO SER SEQRES 13 A 248 GLU ASN ASP GLU ASN GLU TYR PRO HIS ARG ARG ILE ASP SEQRES 14 A 248 ILE ARG LEU ILE PRO LYS ASP GLN TYR TYR CYS GLY VAL SEQRES 15 A 248 LEU TYR PHE THR GLY SER ASP ILE PHE ASN LYS ASN MET SEQRES 16 A 248 ARG ALA HIS ALA LEU GLU LYS GLY PHE THR ILE ASN GLU SEQRES 17 A 248 TYR THR ILE ARG PRO LEU GLY VAL THR GLY VAL ALA GLY SEQRES 18 A 248 GLU PRO LEU PRO VAL ASP SER GLU GLN ASP ILE PHE ASP SEQRES 19 A 248 TYR ILE GLN TRP ARG TYR ARG GLU PRO LYS ASP ARG SER SEQRES 20 A 248 GLU FORMUL 2 HOH *105(H2 O) HELIX 1 F ASP A 92 ARG A 102 1 11 HELIX 2 G PRO A 108 GLY A 118 1 11 HELIX 3 H LEU A 122 LYS A 131 1 10 HELIX 4 I HIS A 134 GLU A 147 1 14 HELIX 5 J ARG A 152 LEU A 169 1 18 HELIX 6 K GLY A 179 GLY A 184 1 6 HELIX 7 L PRO A 208 LYS A 220 5 13 HELIX 8 M LYS A 262 THR A 273 5 12 HELIX 9 N ASP A 276 GLU A 288 1 13 HELIX 10 O GLU A 316 ILE A 323 1 8 HELIX 11 P PRO A 330 ASP A 332 5 3 SHEET 1 A 5 ILE A 174 CYS A 178 0 SHEET 2 A 5 MET A 191 THR A 196 -1 N THR A 196 O ILE A 174 SHEET 3 A 5 ARG A 253 ARG A 258 1 N ASP A 256 O MET A 191 SHEET 4 A 5 LYS A 234 CYS A 239 -1 N CYS A 239 O ARG A 253 SHEET 5 A 5 ILE A 224 THR A 227 -1 N ASP A 226 O VAL A 238 SHEET 1 B 2 PHE A 291 ASN A 294 0 SHEET 2 B 2 THR A 297 PRO A 300 -1 N ARG A 299 O THR A 292 CISPEP 1 GLY A 274 SER A 275 0 2.42 CRYST1 120.785 63.255 37.929 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008279 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015809 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026365 0.00000