PDB Short entry for 1ZV6 HEADER PROTEIN BINDING 01-JUN-05 1ZV6 TITLE NMR STRUCTURE OF THE HUMAN DEMATIN HEADPIECE S74E MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPB49 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 316-383; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PD48 KEYWDS DEMATIN HEADPIECE, ACTIN BINDING DOMAIN, PHOSPHORYLATION, PROTEIN KEYWDS 2 BINDING EXPDTA SOLUTION NMR NUMMDL 21 MDLTYP MINIMIZED AVERAGE AUTHOR Z.G.JIANG,C.J.MCKNIGHT REVDAT 3 20-OCT-21 1ZV6 1 REMARK SEQADV REVDAT 2 24-FEB-09 1ZV6 1 VERSN REVDAT 1 21-MAR-06 1ZV6 0 JRNL AUTH Z.G.JIANG,C.J.MCKNIGHT JRNL TITL A PHOSPHORYLATION-INDUCED CONFORMATION CHANGE IN DEMATIN JRNL TITL 2 HEADPIECE. JRNL REF STRUCTURE V. 14 379 2006 JRNL REFN ISSN 0969-2126 JRNL PMID 16472756 JRNL DOI 10.1016/J.STR.2005.11.007 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : MOLMOL 2K.2, CNS 1.0 REMARK 3 AUTHORS : KORADI (MOLMOL), BRUNGER (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL OF REMARK 3 1449 RESTRAINTS: 1289 ARE NOE-DERIVED DISTANCE CONSTRAINTS, 142 REMARK 3 ARE DIHEDRAL ANGLE RESTRAINTS, AND 18 ARE DISTANCE RESTRAINTS REMARK 3 FROM HYDROGEN BONDS. REMARK 4 REMARK 4 1ZV6 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUN-05. REMARK 100 THE DEPOSITION ID IS D_1000033157. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 10 MM PHOSPHATE REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM DHPS74E U-15N,13C U-15N; 1 REMARK 210 MM DHPS74E 10% 13C, U- 15N, 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; HNCA-J; REMARK 210 HNCOCA; 2D NOESY; 3D_15N- REMARK 210 SEPARATED_NOESY; HNHA; HNHB; 2D REMARK 210 TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2004 VERSION, XWINNMR REMARK 210 3.1, NMRVIEW 5.0.4. REMARK 210 METHOD USED : DISTANCE GEOMETRY/SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 21 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. MODEL 1 REPRESENTS MINIMIZED AVERAGE STRUCTURE. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 69 H ALA A 73 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 21 -68.84 -92.42 REMARK 500 1 ARG A 26 -72.87 -145.57 REMARK 500 1 LYS A 28 26.67 -73.68 REMARK 500 1 PRO A 30 -176.14 -57.82 REMARK 500 1 ARG A 37 43.03 -142.08 REMARK 500 1 GLU A 39 0.50 -69.55 REMARK 500 1 LEU A 61 -141.94 -79.40 REMARK 500 2 PRO A 15 166.60 -47.95 REMARK 500 2 VAL A 21 -67.42 -102.03 REMARK 500 2 THR A 27 -87.24 -50.70 REMARK 500 2 LYS A 28 23.13 48.34 REMARK 500 2 PRO A 30 -170.62 -54.11 REMARK 500 2 ARG A 37 36.73 -141.03 REMARK 500 2 LEU A 61 -145.89 -79.94 REMARK 500 3 PRO A 15 170.11 -52.00 REMARK 500 3 VAL A 21 -66.67 -100.87 REMARK 500 3 THR A 22 -64.83 -105.07 REMARK 500 3 ARG A 26 -46.64 -149.91 REMARK 500 3 THR A 27 20.62 -163.85 REMARK 500 3 LYS A 28 26.69 -70.41 REMARK 500 3 PRO A 30 -174.36 -60.34 REMARK 500 3 LEU A 61 -145.11 -80.07 REMARK 500 4 PRO A 15 166.94 -46.67 REMARK 500 4 VAL A 21 -67.78 -102.13 REMARK 500 4 ARG A 26 -158.00 -137.57 REMARK 500 4 LYS A 28 25.48 39.55 REMARK 500 4 PRO A 30 -173.00 -56.00 REMARK 500 4 ARG A 37 50.23 -143.33 REMARK 500 4 ALA A 52 -3.02 80.90 REMARK 500 4 LEU A 61 -144.31 -84.84 REMARK 500 5 PRO A 15 170.70 -51.17 REMARK 500 5 VAL A 21 -67.63 -102.41 REMARK 500 5 ARG A 26 -158.53 -138.23 REMARK 500 5 LYS A 28 25.23 39.65 REMARK 500 5 PRO A 30 -171.36 -56.10 REMARK 500 5 ARG A 37 44.43 -145.82 REMARK 500 5 ALA A 52 -3.07 90.32 REMARK 500 5 LEU A 61 -141.60 -80.92 REMARK 500 6 PRO A 15 170.92 -51.06 REMARK 500 6 VAL A 21 -65.91 -102.40 REMARK 500 6 ARG A 26 -53.33 -132.93 REMARK 500 6 THR A 27 -57.17 -150.29 REMARK 500 6 LYS A 28 23.22 41.88 REMARK 500 6 PRO A 30 -173.68 -55.38 REMARK 500 6 ARG A 37 41.91 -147.20 REMARK 500 6 GLU A 39 7.07 -68.31 REMARK 500 6 LEU A 61 -141.51 -80.63 REMARK 500 7 VAL A 21 -67.62 -102.19 REMARK 500 7 THR A 22 -61.76 -105.88 REMARK 500 7 ASN A 23 -33.38 -33.80 REMARK 500 REMARK 500 THIS ENTRY HAS 166 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QZP RELATED DB: PDB REMARK 900 NMR STRUCTURE OF THE HUMAN DEMATIN HEADPIECE DOMAIN REMARK 900 RELATED ID: 1QQV RELATED DB: PDB REMARK 900 NMR STRUCTURE OF THE HEADPIECE DOMAIN OF CHICKEN VILLIN REMARK 900 RELATED ID: 1VII RELATED DB: PDB REMARK 900 NMR STRUCTURE OF THE THERMOSTABLE, 35-RESIDUE SUBDOMAIN FROM REMARK 900 CHICKEN VILLIN HEADPIECE REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE DHPS74E CONSTRUCT SPANS RESIDUES 316 TO 383 OF THE 48 REMARK 999 KDA FORM OF HUMAN DEMATIN, WITH SER74 REPLACED BY GLU. REMARK 999 TO FACILITATE THE COMPARISON WITH OTHER HEADPIECE DOMAINS, REMARK 999 WE USE THE NUMBERING SCHEME FROM VARDAR ET AL., 1999, REMARK 999 J.MOLEC.BIOL., 294, 1299-1310, SUCH THAT THE N-TERMINAL REMARK 999 PROLINE OF DHP IS RESIDUE 9, AND C-TERMINAL PHENYLALANINE REMARK 999 IS RESIDUE 76. THE FINAL RESIDUE (F76) IS THE NATURAL REMARK 999 C-TERMINAL RESIDUE OF DEMATIN. DBREF 1ZV6 A 9 76 GB 31127246 AAH52805 316 383 SEQADV 1ZV6 GLU A 74 GB 31127246 SER 381 ENGINEERED MUTATION SEQRES 1 A 68 PRO GLY LEU GLN ILE TYR PRO TYR GLU MET LEU VAL VAL SEQRES 2 A 68 THR ASN LYS GLY ARG THR LYS LEU PRO PRO GLY VAL ASP SEQRES 3 A 68 ARG MET ARG LEU GLU ARG HIS LEU SER ALA GLU ASP PHE SEQRES 4 A 68 SER ARG VAL PHE ALA MET SER PRO GLU GLU PHE GLY LYS SEQRES 5 A 68 LEU ALA LEU TRP LYS ARG ASN GLU LEU LYS LYS LYS ALA SEQRES 6 A 68 GLU LEU PHE HELIX 1 1 TYR A 16 VAL A 20 5 5 HELIX 2 2 ASP A 34 MET A 36 5 3 HELIX 3 3 ARG A 37 LEU A 42 1 6 HELIX 4 4 SER A 43 PHE A 51 1 9 HELIX 5 5 SER A 54 LEU A 61 1 8 HELIX 6 6 ALA A 62 ALA A 73 1 12 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000