PDB Short entry for 1ZVD HEADER LIGASE 01-JUN-05 1ZVD TITLE REGULATION OF SMURF2 UBIQUITIN LIGASE ACTIVITY BY ANCHORING THE E2 TO TITLE 2 THE HECT DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SMAD UBIQUITINATION REGULATORY FACTOR 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HECT DOMAIN; COMPND 5 SYNONYM: UBIQUITIN-- PROTEIN LIGASE SMURF2, SMAD-SPECIFIC E3 COMPND 6 UBIQUITIN LIGASE 2, HSMURF2; COMPND 7 EC: 6.3.2.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SMURF2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PPROEX-HTA KEYWDS UBIQUITIN LIGASECATALYTIC MECHANISM,X-RAY CRYSTAL STRUCTURE, TGFBETA, KEYWDS 2 LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR A.A.OGUNJIMI,D.J.BRIANT,N.PECE-BARBARA,C.LE ROY,G.M.DI GUGLIELMO, AUTHOR 2 P.KAVSAK,R.K.RASMUSSEN,B.T.SEET,F.SICHERI,J.L.WRANA REVDAT 3 28-SEP-11 1ZVD 1 CRYST1 REMARK REVDAT 2 24-FEB-09 1ZVD 1 VERSN REVDAT 1 09-AUG-05 1ZVD 0 JRNL AUTH A.A.OGUNJIMI,D.J.BRIANT,N.PECE-BARBARA,C.LE ROY, JRNL AUTH 2 G.M.DI GUGLIELMO,P.KAVSAK,R.K.RASMUSSEN,B.T.SEET,F.SICHERI, JRNL AUTH 3 J.L.WRANA JRNL TITL REGULATION OF SMURF2 UBIQUITIN LIGASE ACTIVITY BY ANCHORING JRNL TITL 2 THE E2 TO THE HECT DOMAIN. JRNL REF MOL.CELL V. 19 297 2005 JRNL REFN ISSN 1097-2765 JRNL PMID 16061177 JRNL DOI 10.1016/J.MOLCEL.2005.06.028 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 30763 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1631 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1993 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.58 REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 116 REMARK 3 BIN FREE R VALUE : 0.3080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3089 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 183 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.14000 REMARK 3 B22 (A**2) : -0.07000 REMARK 3 B33 (A**2) : 0.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.189 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.175 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.118 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.337 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3212 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4349 ; 1.883 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 382 ; 6.810 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 168 ;35.092 ;23.929 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 579 ;18.028 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;18.935 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 457 ; 0.141 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2470 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1418 ; 0.221 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2156 ; 0.310 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 159 ; 0.203 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 46 ; 0.223 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.187 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1876 ; 1.254 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3041 ; 2.290 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1387 ; 3.614 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1304 ; 5.647 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1ZVD COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUN-05. REMARK 100 THE RCSB ID CODE IS RCSB033164. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-APR-02 REMARK 200 TEMPERATURE (KELVIN) : 200.0 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9799, 0.9997, 0.9568 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32394 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 24.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM PHOSPHATE, POTASSIUM PHOSPHATE, REMARK 280 AND SODIUM ACETATE, PH 6.8, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.67950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.17550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.25450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 76.17550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.67950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.25450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 742 REMARK 465 CYS A 743 REMARK 465 GLY A 744 REMARK 465 PHE A 745 REMARK 465 ALA A 746 REMARK 465 VAL A 747 REMARK 465 GLU A 748 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN A 567 N LYS A 569 1.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 478 CG GLU A 478 CD 0.135 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 664 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 370 -37.80 -133.76 REMARK 500 ASP A 433 135.73 -172.86 REMARK 500 ASP A 463 110.80 -179.09 REMARK 500 ASP A 521 -17.48 -49.88 REMARK 500 LYS A 569 48.96 -89.90 REMARK 500 GLU A 575 43.76 -83.07 REMARK 500 GLU A 576 34.26 74.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 574 GLU A 575 -145.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 LYS A 569 20.4 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 800 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 443 OH REMARK 620 2 THR A 676 O 93.6 REMARK 620 3 THR A 715 O 76.6 92.5 REMARK 620 4 ASN A 718 OD1 151.7 96.8 76.7 REMARK 620 5 GLN A 690 O 109.4 137.9 126.3 79.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 800 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 1 DBREF 1ZVD A 369 748 UNP Q9HAU4 SMUF2_HUMAN 369 748 SEQRES 1 A 380 LYS ARG ASP LEU VAL GLN LYS LEU LYS ILE LEU ARG GLN SEQRES 2 A 380 GLU LEU SER GLN GLN GLN PRO GLN ALA GLY HIS CYS ARG SEQRES 3 A 380 ILE GLU VAL SER ARG GLU GLU ILE PHE GLU GLU SER TYR SEQRES 4 A 380 ARG GLN VAL MSE LYS MSE ARG PRO LYS ASP LEU TRP LYS SEQRES 5 A 380 ARG LEU MSE ILE LYS PHE ARG GLY GLU GLU GLY LEU ASP SEQRES 6 A 380 TYR GLY GLY VAL ALA ARG GLU TRP LEU TYR LEU LEU SER SEQRES 7 A 380 HIS GLU MSE LEU ASN PRO TYR TYR GLY LEU PHE GLN TYR SEQRES 8 A 380 SER ARG ASP ASP ILE TYR THR LEU GLN ILE ASN PRO ASP SEQRES 9 A 380 SER ALA VAL ASN PRO GLU HIS LEU SER TYR PHE HIS PHE SEQRES 10 A 380 VAL GLY ARG ILE MSE GLY MSE ALA VAL PHE HIS GLY HIS SEQRES 11 A 380 TYR ILE ASP GLY GLY PHE THR LEU PRO PHE TYR LYS GLN SEQRES 12 A 380 LEU LEU GLY LYS SER ILE THR LEU ASP ASP MSE GLU LEU SEQRES 13 A 380 VAL ASP PRO ASP LEU HIS ASN SER LEU VAL TRP ILE LEU SEQRES 14 A 380 GLU ASN ASP ILE THR GLY VAL LEU ASP HIS THR PHE CYS SEQRES 15 A 380 VAL GLU HIS ASN ALA TYR GLY GLU ILE ILE GLN HIS GLU SEQRES 16 A 380 LEU LYS PRO ASN GLY LYS SER ILE PRO VAL ASN GLU GLU SEQRES 17 A 380 ASN LYS LYS GLU TYR VAL ARG LEU TYR VAL ASN TRP ARG SEQRES 18 A 380 PHE LEU ARG GLY ILE GLU ALA GLN PHE LEU ALA LEU GLN SEQRES 19 A 380 LYS GLY PHE ASN GLU VAL ILE PRO GLN HIS LEU LEU LYS SEQRES 20 A 380 THR PHE ASP GLU LYS GLU LEU GLU LEU ILE ILE CYS GLY SEQRES 21 A 380 LEU GLY LYS ILE ASP VAL ASN ASP TRP LYS VAL ASN THR SEQRES 22 A 380 ARG LEU LYS HIS CYS THR PRO ASP SER ASN ILE VAL LYS SEQRES 23 A 380 TRP PHE TRP LYS ALA VAL GLU PHE PHE ASP GLU GLU ARG SEQRES 24 A 380 ARG ALA ARG LEU LEU GLN PHE VAL THR GLY SER SER ARG SEQRES 25 A 380 VAL PRO LEU GLN GLY PHE LYS ALA LEU GLN GLY ALA ALA SEQRES 26 A 380 GLY PRO ARG LEU PHE THR ILE HIS GLN ILE ASP ALA CYS SEQRES 27 A 380 THR ASN ASN LEU PRO LYS ALA HIS THR CYS PHE ASN ARG SEQRES 28 A 380 ILE ASP ILE PRO PRO TYR GLU SER TYR GLU LYS LEU TYR SEQRES 29 A 380 GLU LYS LEU LEU THR ALA ILE GLU GLU THR CYS GLY PHE SEQRES 30 A 380 ALA VAL GLU MODRES 1ZVD MSE A 411 MET SELENOMETHIONINE MODRES 1ZVD MSE A 413 MET SELENOMETHIONINE MODRES 1ZVD MSE A 423 MET SELENOMETHIONINE MODRES 1ZVD MSE A 449 MET SELENOMETHIONINE MODRES 1ZVD MSE A 490 MET SELENOMETHIONINE MODRES 1ZVD MSE A 492 MET SELENOMETHIONINE MODRES 1ZVD MSE A 522 MET SELENOMETHIONINE HET MSE A 411 8 HET MSE A 413 8 HET MSE A 423 8 HET MSE A 449 8 HET MSE A 490 8 HET MSE A 492 8 HET MSE A 522 8 HET NA A 800 1 HET PO4 A 1 5 HETNAM MSE SELENOMETHIONINE HETNAM NA SODIUM ION HETNAM PO4 PHOSPHATE ION FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 2 NA NA 1+ FORMUL 3 PO4 O4 P 3- FORMUL 4 HOH *183(H2 O) HELIX 1 1 ASP A 371 LEU A 379 1 9 HELIX 2 2 GLN A 381 GLN A 387 1 7 HELIX 3 3 GLU A 401 MSE A 411 1 11 HELIX 4 4 LYS A 412 MSE A 413 5 2 HELIX 5 5 ARG A 414 LYS A 420 5 7 HELIX 6 6 ASP A 433 LEU A 450 1 18 HELIX 7 7 ASN A 451 GLY A 455 5 5 HELIX 8 8 ASP A 472 ASN A 476 5 5 HELIX 9 9 GLU A 478 HIS A 496 1 19 HELIX 10 10 THR A 505 LEU A 513 1 9 HELIX 11 11 ASP A 521 ASP A 526 1 6 HELIX 12 12 ASP A 526 ASN A 539 1 14 HELIX 13 13 ASN A 577 LEU A 591 1 15 HELIX 14 14 ILE A 594 ILE A 609 1 16 HELIX 15 15 PRO A 610 LYS A 615 5 6 HELIX 16 16 ASP A 618 GLY A 628 1 11 HELIX 17 17 ASP A 633 ASN A 640 1 8 HELIX 18 18 SER A 650 PHE A 663 1 14 HELIX 19 19 ASP A 664 GLY A 677 1 14 HELIX 20 20 GLY A 685 ALA A 688 5 4 HELIX 21 21 THR A 715 PHE A 717 5 3 HELIX 22 22 SER A 727 GLU A 740 1 14 SHEET 1 A 2 HIS A 392 VAL A 397 0 SHEET 2 A 2 ARG A 421 PHE A 426 1 O ARG A 421 N CYS A 393 SHEET 1 B 2 PHE A 457 SER A 460 0 SHEET 2 B 2 ASP A 463 ILE A 469 -1 O GLN A 468 N GLN A 458 SHEET 1 C 2 CYS A 550 VAL A 551 0 SHEET 2 C 2 HIS A 562 GLU A 563 -1 O HIS A 562 N VAL A 551 SHEET 1 D 4 THR A 641 ARG A 642 0 SHEET 2 D 4 PHE A 698 GLN A 702 1 O PHE A 698 N ARG A 642 SHEET 3 D 4 ARG A 719 ILE A 722 1 O ILE A 720 N THR A 699 SHEET 4 D 4 LYS A 712 HIS A 714 -1 N LYS A 712 O ASP A 721 SHEET 1 E 2 GLN A 690 GLY A 691 0 SHEET 2 E 2 GLY A 694 PRO A 695 -1 O GLY A 694 N GLY A 691 LINK C VAL A 410 N MSE A 411 1555 1555 1.34 LINK C MSE A 411 N LYS A 412 1555 1555 1.33 LINK C LYS A 412 N MSE A 413 1555 1555 1.32 LINK C MSE A 413 N ARG A 414 1555 1555 1.33 LINK C LEU A 422 N MSE A 423 1555 1555 1.31 LINK C MSE A 423 N ILE A 424 1555 1555 1.32 LINK C GLU A 448 N MSE A 449 1555 1555 1.31 LINK C MSE A 449 N LEU A 450 1555 1555 1.33 LINK C ILE A 489 N MSE A 490 1555 1555 1.33 LINK C MSE A 490 N GLY A 491 1555 1555 1.32 LINK C GLY A 491 N MSE A 492 1555 1555 1.35 LINK C MSE A 492 N ALA A 493 1555 1555 1.33 LINK C ASP A 521 N MSE A 522 1555 1555 1.34 LINK C MSE A 522 N GLU A 523 1555 1555 1.33 LINK OH TYR A 443 NA NA A 800 1555 1555 2.74 LINK O THR A 676 NA NA A 800 1555 1555 2.65 LINK O THR A 715 NA NA A 800 1555 1555 2.63 LINK OD1 ASN A 718 NA NA A 800 1555 1555 2.61 LINK O GLN A 690 NA NA A 800 1555 1555 3.01 SITE 1 AC1 5 TYR A 443 THR A 676 GLN A 690 THR A 715 SITE 2 AC1 5 ASN A 718 SITE 1 AC2 5 HOH A 147 GLY A 391 HIS A 392 ARG A 394 SITE 2 AC2 5 ARG A 668 CRYST1 51.359 70.509 152.351 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019471 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014183 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006564 0.00000