PDB Short entry for 1ZY3
HEADER    APOPTOSIS                               09-JUN-05   1ZY3              
TITLE     STRUCTURAL MODEL OF COMPLEX OF BCL-W PROTEIN WITH BID BH3-            
TITLE    2 PEPTIDE                                                              
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: APOPTOSIS REGULATOR BCL-W;                                 
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: RESIDUES 2-171;                                            
COMPND   5 SYNONYM: BCL-2-LIKE 2 PROTEIN;                                       
COMPND   6 ENGINEERED: YES;                                                     
COMPND   7 MUTATION: YES;                                                       
COMPND   8 MOL_ID: 2;                                                           
COMPND   9 MOLECULE: BH3-PEPTIDE FROM BH3 INTERACTING DOMAIN DEATH              
COMPND  10 AGONIST PROTEIN;                                                     
COMPND  11 CHAIN: B;                                                            
COMPND  12 SYNONYM: BID;                                                        
COMPND  13 ENGINEERED: YES;                                                     
COMPND  14 MUTATION: YES                                                        
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21;                            
SOURCE   6 EXPRESSION_SYSTEM_TAXID: 511693;                                     
SOURCE   7 EXPRESSION_SYSTEM_STRAIN: BL21;                                      
SOURCE   8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE   9 EXPRESSION_SYSTEM_PLASMID: PET-29B+;                                 
SOURCE  10 MOL_ID: 2;                                                           
SOURCE  11 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE  12 ORGANISM_COMMON: HUMAN;                                              
SOURCE  13 ORGANISM_TAXID: 9606;                                                
SOURCE  14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21;                            
SOURCE  15 EXPRESSION_SYSTEM_TAXID: 511693;                                     
SOURCE  16 EXPRESSION_SYSTEM_STRAIN: BL21;                                      
SOURCE  17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE  18 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1                                 
KEYWDS    APOPTOSIS, BCL-W, BH3-PEPTIDE                                         
EXPDTA    SOLUTION NMR                                                          
NUMMDL    10                                                                    
AUTHOR    A.Y.DENISOV,K.GEHRING                                                 
REVDAT   3   24-FEB-09 1ZY3    1       VERSN                                    
REVDAT   2   28-FEB-06 1ZY3    1       JRNL                                     
REVDAT   1   14-FEB-06 1ZY3    0                                                
JRNL        AUTH   A.Y.DENISOV,G.CHEN,T.SPRULES,T.MOLDOVEANU,                   
JRNL        AUTH 2 P.BEAUPARLANT,K.GEHRING                                      
JRNL        TITL   STRUCTURAL MODEL OF THE BCL-W-BID PEPTIDE COMPLEX            
JRNL        TITL 2 AND ITS INTERACTIONS WITH PHOSPHOLIPID MICELLES.             
JRNL        REF    BIOCHEMISTRY                  V.  45  2250 2006              
JRNL        REFN                   ISSN 0006-2960                               
JRNL        PMID   16475813                                                     
JRNL        DOI    10.1021/BI052332S                                            
REMARK   1                                                                      
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : HADDOCK 1.2                                          
REMARK   3   AUTHORS     : BONVIN ET AL.                                        
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: 200 CONFORMERS WERE OBTAINED IN THE       
REMARK   3  RIGID BODY DOCKING AND 100 BEST CONFORMERS WERE SELECTED FOR        
REMARK   3  SEMI-FLEXIBLE SIMULATED ANNEALING FOLLOWING BY REFINEMENT           
REMARK   4                                                                      
REMARK   4 1ZY3 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JUN-05.                  
REMARK 100 THE RCSB ID CODE IS RCSB033254.                                      
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 303                                
REMARK 210  PH                             : 7.0                                
REMARK 210  IONIC STRENGTH                 : 10 MM NACL                         
REMARK 210  PRESSURE                       : 1ATM                               
REMARK 210  SAMPLE CONTENTS                : 0.7 MM BCL-W U-15N,13C, 0.7        
REMARK 210                                   MM BID BH3-PEPTIDE, 20 MM          
REMARK 210                                   PHOSPHATE BUFFER, 90% H2O, 10%     
REMARK 210                                   D2O; 0.7 MM BCL-W U-15N, 0.7       
REMARK 210                                   MM BID BH3-PEPTIDE, 20 MM          
REMARK 210                                   PHOSPHATE BUFFER, 90% H2O, 10%     
REMARK 210                                   D2O; 0.7 MM BID BH3-PEPTIDE U-     
REMARK 210                                   15N, 0.7 MM BCL-W, 20 MM           
REMARK 210                                   PHOSPHATE BUFFER, 90% H2O, 10%     
REMARK 210                                   D2O                                
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : HNCACB, CBCA(CO)HN, 15N-           
REMARK 210                                   EDITED NOESY, HNHA, 15N-1H HSQC    
REMARK 210  SPECTROMETER FIELD STRENGTH    : 800 MHZ, 600 MHZ                   
REMARK 210  SPECTROMETER MODEL             : UNITY INOVA, DRX                   
REMARK 210  SPECTROMETER MANUFACTURER      : VARIAN, BRUKER                     
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : NMRPIPE 2.0, XEASY 1.3.13,         
REMARK 210                                   HADDOCK 1.2                        
REMARK 210   METHOD USED                   : RIGID BODY DOCKING, SEMI-          
REMARK 210                                   FLEXIBLE SIMULATED ANNEALING,      
REMARK 210                                   REFINEMENT USING EXPLICIT WATER    
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 100                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 10                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : STRUCTURES WITH THE LEAST          
REMARK 210                                   RESTRAINT VIOLATIONS,              
REMARK 210                                   STRUCTURES WITH THE LOWEST         
REMARK 210                                   ENERGY                             
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: THIS MODEL STRUCTURE WAS OBTAINED USING AMBIGOUS             
REMARK 210  CHEMICAL SHIFT PERTURBATION CONSTRAINTS, NOE DISTANCES AND          
REMARK 210  HYDROGEN BONDS                                                      
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER;                   
REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                            
REMARK 465   MODELS 1-10                                                        
REMARK 465     RES C SSSEQI                                                     
REMARK 465     LEU A   171                                                      
REMARK 465     GLU A   172                                                      
REMARK 465     HIS A   173                                                      
REMARK 465     HIS A   174                                                      
REMARK 465     HIS A   175                                                      
REMARK 465     HIS A   176                                                      
REMARK 465     HIS A   177                                                      
REMARK 465     HIS A   178                                                      
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 ASP A  50      -33.49   -151.26                                   
REMARK 500  1 GLU A  51      -72.01    -60.38                                   
REMARK 500  1 PHE A  56      -85.58    -98.13                                   
REMARK 500  1 ARG A  57      -71.12    175.05                                   
REMARK 500  1 ARG A  58       61.29   -160.63                                   
REMARK 500  1 PRO A  71      109.21    -51.84                                   
REMARK 500  1 SER A  73     -159.45   -151.17                                   
REMARK 500  1 ALA A  74     -157.19    -80.60                                   
REMARK 500  1 THR A 131      -70.19   -121.53                                   
REMARK 500  1 TRP A 166      -83.03    -67.46                                   
REMARK 500  1 ARG B 218       31.60    -77.07                                   
REMARK 500  1 SER B 219       92.93     67.59                                   
REMARK 500  2 ASP A  50      -46.41   -146.37                                   
REMARK 500  2 PHE A  56      -85.82   -118.85                                   
REMARK 500  2 ARG A  57      -72.20    175.71                                   
REMARK 500  2 ARG A  58       60.67   -154.55                                   
REMARK 500  2 PRO A  71      106.35    -53.45                                   
REMARK 500  2 SER A  73     -157.22   -146.80                                   
REMARK 500  2 ALA A  74     -167.32    -72.24                                   
REMARK 500  2 MET A 114       61.84   -104.51                                   
REMARK 500  2 THR A 131      -77.10   -124.41                                   
REMARK 500  2 LEU A 155      -20.34   -141.23                                   
REMARK 500  2 GLU A 156     -169.25   -102.86                                   
REMARK 500  2 GLU A 157      -40.14   -136.03                                   
REMARK 500  2 TRP A 166      -58.90   -165.12                                   
REMARK 500  2 SER B 219      178.13     65.93                                   
REMARK 500  3 ASP A  50      -47.67   -132.46                                   
REMARK 500  3 PHE A  56      -96.74    -97.77                                   
REMARK 500  3 ARG A  57      -68.43    170.48                                   
REMARK 500  3 ARG A  58       79.36   -154.21                                   
REMARK 500  3 SER A  61      -54.93   -124.04                                   
REMARK 500  3 PRO A  71      105.70    -54.62                                   
REMARK 500  3 SER A  73     -148.30   -156.78                                   
REMARK 500  3 ALA A  74     -156.62    -93.99                                   
REMARK 500  3 MET A 114       64.07   -106.57                                   
REMARK 500  3 THR A 131      -64.04    -94.96                                   
REMARK 500  3 ALA A 154       20.64   -140.00                                   
REMARK 500  3 ALA A 158       20.02    -77.21                                   
REMARK 500  3 ARG A 159      -34.07   -149.14                                   
REMARK 500  3 GLU A 163      -72.83   -101.46                                   
REMARK 500  3 ASN A 165      -29.20   -173.37                                   
REMARK 500  3 TRP A 166      -73.04    -75.31                                   
REMARK 500  3 ILE B 202       49.82   -150.46                                   
REMARK 500  3 SER B 219     -177.60     67.12                                   
REMARK 500  4 PRO A  32       99.09    -67.40                                   
REMARK 500  4 ASP A  50      -42.59   -162.82                                   
REMARK 500  4 PHE A  56      -92.27    -97.52                                   
REMARK 500  4 ARG A  57      -64.23    179.92                                   
REMARK 500  4 ARG A  58       54.70   -148.26                                   
REMARK 500  4 SER A  73     -132.06   -152.57                                   
REMARK 500  4 ALA A  74     -159.08    -99.69                                   
REMARK 500  4 TRP A  92      -71.58    -46.43                                   
REMARK 500  4 THR A 131      -64.13   -105.19                                   
REMARK 500  4 GLU A 157       40.66   -149.39                                   
REMARK 500  4 ARG A 159        9.92   -151.03                                   
REMARK 500  4 ARG A 160      -70.33    -59.21                                   
REMARK 500  4 LEU A 161       49.39    -90.36                                   
REMARK 500  4 SER A 168      -63.31   -173.95                                   
REMARK 500  4 SER B 219     -164.58     57.85                                   
REMARK 500  5 PRO A  36      109.15    -56.30                                   
REMARK 500  5 ASP A  50      -51.90   -143.11                                   
REMARK 500  5 PHE A  56      -82.89   -107.28                                   
REMARK 500  5 ARG A  57      -65.79    167.30                                   
REMARK 500  5 ARG A  58       72.20   -153.35                                   
REMARK 500  5 SER A  61      -77.03   -153.20                                   
REMARK 500  5 PRO A  71       99.29    -61.14                                   
REMARK 500  5 SER A  73     -157.73   -158.22                                   
REMARK 500  5 ALA A  74     -156.92    -78.30                                   
REMARK 500  5 MET A 114       66.60   -100.47                                   
REMARK 500  5 ALA A 154       65.04   -116.61                                   
REMARK 500  5 LEU A 155      -78.55    -80.71                                   
REMARK 500  5 TRP A 166      -64.76   -103.08                                   
REMARK 500  5 ALA A 167       25.22   -145.05                                   
REMARK 500  6 ASP A  50      -42.14   -155.62                                   
REMARK 500  6 GLU A  51      -78.41    -58.78                                   
REMARK 500  6 PHE A  56      -74.79   -102.96                                   
REMARK 500  6 ARG A  57      -69.38    177.36                                   
REMARK 500  6 ARG A  58       58.75   -165.94                                   
REMARK 500  6 SER A  73     -130.64   -143.18                                   
REMARK 500  6 ALA A  74     -153.99    -99.05                                   
REMARK 500  6 THR A 131      -70.00   -122.92                                   
REMARK 500  6 ALA A 158      -67.91   -104.76                                   
REMARK 500  6 ARG A 159       42.11    -87.69                                   
REMARK 500  6 TRP A 166      -68.43   -150.97                                   
REMARK 500  6 ALA A 167     -125.02   -114.18                                   
REMARK 500  6 ARG B 218       45.83    -75.67                                   
REMARK 500  6 SER B 219       88.24     57.13                                   
REMARK 500  7 VAL A  27      109.22    -59.38                                   
REMARK 500  7 ASP A  50      -61.06   -126.80                                   
REMARK 500  7 PHE A  56      -82.47    -80.08                                   
REMARK 500  7 ARG A  57      -68.36    165.82                                   
REMARK 500  7 ARG A  58       72.45   -159.42                                   
REMARK 500  7 PRO A  71       94.98    -63.83                                   
REMARK 500  7 SER A  73     -159.70   -162.31                                   
REMARK 500  7 ALA A  74     -160.70    -79.04                                   
REMARK 500  7 THR A 131      -88.93   -115.41                                   
REMARK 500  7 ALA A 154     -162.05   -122.62                                   
REMARK 500  7 LEU A 161       43.06   -159.19                                   
REMARK 500  7 ARG A 162       44.51   -153.12                                   
REMARK 500  7 ALA A 167     -155.26   -147.80                                   
REMARK 500  8 ASP A  50      -43.22   -152.07                                   
REMARK 500  8 PHE A  56      -88.89   -116.16                                   
REMARK 500  8 ARG A  57      -83.67   -174.75                                   
REMARK 500  8 ARG A  58       49.99   -148.87                                   
REMARK 500  8 SER A  73     -155.28   -152.36                                   
REMARK 500  8 ALA A  74     -159.18    -75.87                                   
REMARK 500  8 TRP A  92      -72.47    -45.00                                   
REMARK 500  8 THR A 131      -65.61   -108.29                                   
REMARK 500  8 ASP A 152      -65.39   -123.32                                   
REMARK 500  8 TRP A 166      -65.77   -171.26                                   
REMARK 500  8 ILE B 202      100.79   -162.30                                   
REMARK 500  8 SER B 219      -57.67     70.36                                   
REMARK 500  9 PRO A  36      108.56    -48.00                                   
REMARK 500  9 ASP A  50      -46.48   -148.34                                   
REMARK 500  9 PHE A  56      -92.47   -111.87                                   
REMARK 500  9 ARG A  57      -66.51    175.11                                   
REMARK 500  9 ARG A  58       56.55   -154.30                                   
REMARK 500  9 PRO A  71      104.45    -50.92                                   
REMARK 500  9 SER A  73     -148.44   -142.84                                   
REMARK 500  9 ALA A  74     -158.19    -83.03                                   
REMARK 500  9 MET A 114       62.79   -106.73                                   
REMARK 500  9 THR A 131      -61.52   -121.37                                   
REMARK 500  9 ALA A 154      -25.02   -145.85                                   
REMARK 500  9 ARG A 159       41.39   -148.36                                   
REMARK 500  9 ARG A 160      -81.60   -108.76                                   
REMARK 500  9 ARG A 162      -93.71   -122.56                                   
REMARK 500 10 GLU A  51      -71.89    -56.99                                   
REMARK 500 10 PHE A  56      -93.62    -97.05                                   
REMARK 500 10 ARG A  57      -81.23   -175.39                                   
REMARK 500 10 ARG A  58       67.26   -153.03                                   
REMARK 500 10 PRO A  71      107.65    -52.35                                   
REMARK 500 10 SER A  73     -150.43   -157.21                                   
REMARK 500 10 ALA A  74     -168.19    -76.35                                   
REMARK 500 10 MET A 114       75.86   -105.63                                   
REMARK 500 10 THR A 131      -80.15   -119.10                                   
REMARK 500 10 ARG A 162       90.48    -67.64                                   
REMARK 500 10 SER B 219     -170.43     67.82                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 1MK3   RELATED DB: PDB                                   
REMARK 900 BCL-W PROTEIN                                                        
DBREF  1ZY3 A    1   170  UNP    Q92843   BCLW_HUMAN       2    171             
DBREF  1ZY3 B  201   220  UNP    P55957   BID_HUMAN       82    101             
SEQADV 1ZY3 VAL A  116  UNP  Q92843    PRO   117 ENGINEERED                     
SEQADV 1ZY3 LEU A  171  UNP  Q92843              EXPRESSION TAG                 
SEQADV 1ZY3 GLU A  172  UNP  Q92843              EXPRESSION TAG                 
SEQADV 1ZY3 HIS A  173  UNP  Q92843              EXPRESSION TAG                 
SEQADV 1ZY3 HIS A  174  UNP  Q92843              EXPRESSION TAG                 
SEQADV 1ZY3 HIS A  175  UNP  Q92843              EXPRESSION TAG                 
SEQADV 1ZY3 HIS A  176  UNP  Q92843              EXPRESSION TAG                 
SEQADV 1ZY3 HIS A  177  UNP  Q92843              EXPRESSION TAG                 
SEQADV 1ZY3 HIS A  178  UNP  Q92843              EXPRESSION TAG                 
SEQADV 1ZY3 LYS B  203  UNP  P55957    ARG    84 ENGINEERED                     
SEQRES   1 A  178  ALA THR PRO ALA SER ALA PRO ASP THR ARG ALA LEU VAL          
SEQRES   2 A  178  ALA ASP PHE VAL GLY TYR LYS LEU ARG GLN LYS GLY TYR          
SEQRES   3 A  178  VAL CYS GLY ALA GLY PRO GLY GLU GLY PRO ALA ALA ASP          
SEQRES   4 A  178  PRO LEU HIS GLN ALA MET ARG ALA ALA GLY ASP GLU PHE          
SEQRES   5 A  178  GLU THR ARG PHE ARG ARG THR PHE SER ASP LEU ALA ALA          
SEQRES   6 A  178  GLN LEU HIS VAL THR PRO GLY SER ALA GLN GLN ARG PHE          
SEQRES   7 A  178  THR GLN VAL SER ASP GLU LEU PHE GLN GLY GLY PRO ASN          
SEQRES   8 A  178  TRP GLY ARG LEU VAL ALA PHE PHE VAL PHE GLY ALA ALA          
SEQRES   9 A  178  LEU CYS ALA GLU SER VAL ASN LYS GLU MET GLU VAL LEU          
SEQRES  10 A  178  VAL GLY GLN VAL GLN GLU TRP MET VAL ALA TYR LEU GLU          
SEQRES  11 A  178  THR ARG LEU ALA ASP TRP ILE HIS SER SER GLY GLY TRP          
SEQRES  12 A  178  ALA GLU PHE THR ALA LEU TYR GLY ASP GLY ALA LEU GLU          
SEQRES  13 A  178  GLU ALA ARG ARG LEU ARG GLU GLY ASN TRP ALA SER VAL          
SEQRES  14 A  178  ARG LEU GLU HIS HIS HIS HIS HIS HIS                          
SEQRES   1 B   20  ILE ILE LYS ASN ILE ALA ARG HIS LEU ALA GLN VAL GLY          
SEQRES   2 B   20  ASP SER MET ASP ARG SER ILE                                  
HELIX    1   1 ASP A    8  LYS A   24  1                                  17    
HELIX    2   2 ASP A   39  GLY A   49  1                                  11    
HELIX    3   3 ASP A   50  ARG A   57  1                                   8    
HELIX    4   4 ARG A   58  LEU A   67  1                                  10    
HELIX    5   5 ALA A   74  GLN A   87  1                                  14    
HELIX    6   6 ASN A   91  LYS A  112  1                                  22    
HELIX    7   7 MET A  114  GLU A  130  1                                  17    
HELIX    8   8 LEU A  133  GLY A  141  1                                   9    
HELIX    9   9 TRP A  143  TYR A  150  1                                   8    
HELIX   10  10 ILE B  202  ARG B  218  1                                  17    
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000