PDB Short entry for 1ZY7 HEADER HYDROLASE 09-JUN-05 1ZY7 TITLE CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF AN ADENOSINE DEAMINASE TITLE 2 THAT ACTS ON RNA (HADAR2) BOUND TO INOSITOL HEXAKISPHOSPHATE (IHP) COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-SPECIFIC ADENOSINE DEAMINASE B1, ISOFORM DRADA2A; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 6 EXPRESSION_SYSTEM_COMMON: BAKER'S YEAST; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4932; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BCY123; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PJELTRC6 KEYWDS ALPHA/BETA DEAMINASE MOTIF, ZINC COORDINATION, IONSITOL KEYWDS 2 HEXAKISPHOSPHATE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.R.MACBETH,H.L.SCHUBERT,A.P.VANDEMARK,A.T.LINGAM,C.P.HILL,B.L.BASS REVDAT 4 14-FEB-24 1ZY7 1 REMARK REVDAT 3 14-OCT-20 1ZY7 1 REMARK HETSYN LINK REVDAT 2 24-FEB-09 1ZY7 1 VERSN REVDAT 1 13-SEP-05 1ZY7 0 JRNL AUTH M.R.MACBETH,H.L.SCHUBERT,A.P.VANDEMARK,A.T.LINGAM,C.P.HILL, JRNL AUTH 2 B.L.BASS JRNL TITL INOSITOL HEXAKISPHOSPHATE IS BOUND IN THE ADAR2 CORE AND JRNL TITL 2 REQUIRED FOR RNA EDITING. JRNL REF SCIENCE V. 309 1534 2005 JRNL REFN ISSN 0036-8075 JRNL PMID 16141067 JRNL DOI 10.1126/SCIENCE.1113150 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.3 REMARK 3 NUMBER OF REFLECTIONS : 82731 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : 5% REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 4219 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3900 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 62.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.1730 REMARK 3 BIN FREE R VALUE SET COUNT : 276 REMARK 3 BIN FREE R VALUE : 0.2030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5801 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 79 REMARK 3 SOLVENT ATOMS : 669 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.46000 REMARK 3 B22 (A**2) : -0.27000 REMARK 3 B33 (A**2) : -0.20000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.104 REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.045 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.291 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5991 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8110 ; 1.480 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 734 ; 5.740 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 254 ;34.142 ;22.913 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1060 ;13.553 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 51 ;18.876 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 908 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4389 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2994 ; 0.208 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4182 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 540 ; 0.155 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 4 ; 0.041 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 92 ; 0.194 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 42 ; 0.146 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3763 ; 0.943 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5913 ; 1.573 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2486 ; 2.409 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2197 ; 3.651 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1ZY7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JUN-05. REMARK 100 THE DEPOSITION ID IS D_1000033258. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-SEP-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 4 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : YALE MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 82849 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 62.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BIS-TRIS, AMMONIUM SULFATE, PEG 3350, REMARK 280 GLYCEROL, PH 6.8, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.10250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.66550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 60.59600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.66550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.10250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 60.59600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 299 REMARK 465 HIS A 300 REMARK 465 LEU A 301 REMARK 465 ASP A 302 REMARK 465 GLN A 303 REMARK 465 THR A 304 REMARK 465 PRO A 305 REMARK 465 SER A 458 REMARK 465 PRO A 459 REMARK 465 HIS A 460 REMARK 465 GLU A 461 REMARK 465 PRO A 462 REMARK 465 ILE A 463 REMARK 465 LEU A 464 REMARK 465 GLU A 465 REMARK 465 GLU A 466 REMARK 465 PRO A 467 REMARK 465 ALA A 468 REMARK 465 ASP A 469 REMARK 465 ARG A 470 REMARK 465 HIS A 471 REMARK 465 PRO A 472 REMARK 465 ASN A 473 REMARK 465 ARG A 474 REMARK 465 PRO A 701 REMARK 465 LEU B 299 REMARK 465 HIS B 300 REMARK 465 LEU B 301 REMARK 465 ASP B 302 REMARK 465 GLN B 303 REMARK 465 THR B 304 REMARK 465 PRO B 305 REMARK 465 GLU B 313 REMARK 465 GLY B 314 REMARK 465 LEU B 315 REMARK 465 GLN B 316 REMARK 465 PRO B 462 REMARK 465 ILE B 463 REMARK 465 LEU B 464 REMARK 465 GLU B 465 REMARK 465 GLU B 466 REMARK 465 PRO B 467 REMARK 465 ALA B 468 REMARK 465 ASP B 469 REMARK 465 ARG B 470 REMARK 465 HIS B 471 REMARK 465 PRO B 472 REMARK 465 ASN B 473 REMARK 465 ARG B 494 REMARK 465 SER B 495 REMARK 465 ASN B 496 REMARK 465 ALA B 497 REMARK 465 SER B 498 REMARK 465 ILE B 499 REMARK 465 GLN B 500 REMARK 465 THR B 501 REMARK 465 TRP B 502 REMARK 465 ASP B 503 REMARK 465 GLY B 504 REMARK 465 VAL B 505 REMARK 465 LEU B 506 REMARK 465 GLN B 507 REMARK 465 GLY B 508 REMARK 465 GLU B 509 REMARK 465 ARG B 510 REMARK 465 PRO B 701 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 958 O HOH A 1237 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 325 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG B 590 NE - CZ - NH1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG B 590 NE - CZ - NH2 ANGL. DEV. = -6.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 525 -55.80 -122.03 REMARK 500 TYR A 561 -36.84 -160.36 REMARK 500 LEU A 573 -11.62 79.86 REMARK 500 ASN A 656 -89.92 -133.49 REMARK 500 THR B 375 21.19 -142.91 REMARK 500 ARG B 477 -141.74 -111.01 REMARK 500 VAL B 525 -51.89 -123.96 REMARK 500 TYR B 561 -36.94 -162.99 REMARK 500 LEU B 573 -15.17 76.30 REMARK 500 ILE B 652 107.46 -162.73 REMARK 500 ASN B 656 -84.67 -136.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 801 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 394 ND1 REMARK 620 2 CYS A 451 SG 108.7 REMARK 620 3 CYS A 516 SG 106.7 113.8 REMARK 620 4 HOH A1274 O 111.9 106.6 109.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 802 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 394 ND1 REMARK 620 2 CYS B 451 SG 108.9 REMARK 620 3 CYS B 516 SG 109.2 112.1 REMARK 620 4 HOH B1166 O 110.6 107.8 108.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IHP A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IHP B 902 DBREF 1ZY7 A 299 701 UNP P78563 RED1_HUMAN 299 701 DBREF 1ZY7 B 299 701 UNP P78563 RED1_HUMAN 299 701 SEQRES 1 A 403 LEU HIS LEU ASP GLN THR PRO SER ARG GLN PRO ILE PRO SEQRES 2 A 403 SER GLU GLY LEU GLN LEU HIS LEU PRO GLN VAL LEU ALA SEQRES 3 A 403 ASP ALA VAL SER ARG LEU VAL LEU GLY LYS PHE GLY ASP SEQRES 4 A 403 LEU THR ASP ASN PHE SER SER PRO HIS ALA ARG ARG LYS SEQRES 5 A 403 VAL LEU ALA GLY VAL VAL MET THR THR GLY THR ASP VAL SEQRES 6 A 403 LYS ASP ALA LYS VAL ILE SER VAL SER THR GLY THR LYS SEQRES 7 A 403 CYS ILE ASN GLY GLU TYR MET SER ASP ARG GLY LEU ALA SEQRES 8 A 403 LEU ASN ASP CYS HIS ALA GLU ILE ILE SER ARG ARG SER SEQRES 9 A 403 LEU LEU ARG PHE LEU TYR THR GLN LEU GLU LEU TYR LEU SEQRES 10 A 403 ASN ASN LYS ASP ASP GLN LYS ARG SER ILE PHE GLN LYS SEQRES 11 A 403 SER GLU ARG GLY GLY PHE ARG LEU LYS GLU ASN VAL GLN SEQRES 12 A 403 PHE HIS LEU TYR ILE SER THR SER PRO CYS GLY ASP ALA SEQRES 13 A 403 ARG ILE PHE SER PRO HIS GLU PRO ILE LEU GLU GLU PRO SEQRES 14 A 403 ALA ASP ARG HIS PRO ASN ARG LYS ALA ARG GLY GLN LEU SEQRES 15 A 403 ARG THR LYS ILE GLU SER GLY GLU GLY THR ILE PRO VAL SEQRES 16 A 403 ARG SER ASN ALA SER ILE GLN THR TRP ASP GLY VAL LEU SEQRES 17 A 403 GLN GLY GLU ARG LEU LEU THR MET SER CYS SER ASP LYS SEQRES 18 A 403 ILE ALA ARG TRP ASN VAL VAL GLY ILE GLN GLY SER LEU SEQRES 19 A 403 LEU SER ILE PHE VAL GLU PRO ILE TYR PHE SER SER ILE SEQRES 20 A 403 ILE LEU GLY SER LEU TYR HIS GLY ASP HIS LEU SER ARG SEQRES 21 A 403 ALA MET TYR GLN ARG ILE SER ASN ILE GLU ASP LEU PRO SEQRES 22 A 403 PRO LEU TYR THR LEU ASN LYS PRO LEU LEU SER GLY ILE SEQRES 23 A 403 SER ASN ALA GLU ALA ARG GLN PRO GLY LYS ALA PRO ASN SEQRES 24 A 403 PHE SER VAL ASN TRP THR VAL GLY ASP SER ALA ILE GLU SEQRES 25 A 403 VAL ILE ASN ALA THR THR GLY LYS ASP GLU LEU GLY ARG SEQRES 26 A 403 ALA SER ARG LEU CYS LYS HIS ALA LEU TYR CYS ARG TRP SEQRES 27 A 403 MET ARG VAL HIS GLY LYS VAL PRO SER HIS LEU LEU ARG SEQRES 28 A 403 SER LYS ILE THR LYS PRO ASN VAL TYR HIS GLU SER LYS SEQRES 29 A 403 LEU ALA ALA LYS GLU TYR GLN ALA ALA LYS ALA ARG LEU SEQRES 30 A 403 PHE THR ALA PHE ILE LYS ALA GLY LEU GLY ALA TRP VAL SEQRES 31 A 403 GLU LYS PRO THR GLU GLN ASP GLN PHE SER LEU THR PRO SEQRES 1 B 403 LEU HIS LEU ASP GLN THR PRO SER ARG GLN PRO ILE PRO SEQRES 2 B 403 SER GLU GLY LEU GLN LEU HIS LEU PRO GLN VAL LEU ALA SEQRES 3 B 403 ASP ALA VAL SER ARG LEU VAL LEU GLY LYS PHE GLY ASP SEQRES 4 B 403 LEU THR ASP ASN PHE SER SER PRO HIS ALA ARG ARG LYS SEQRES 5 B 403 VAL LEU ALA GLY VAL VAL MET THR THR GLY THR ASP VAL SEQRES 6 B 403 LYS ASP ALA LYS VAL ILE SER VAL SER THR GLY THR LYS SEQRES 7 B 403 CYS ILE ASN GLY GLU TYR MET SER ASP ARG GLY LEU ALA SEQRES 8 B 403 LEU ASN ASP CYS HIS ALA GLU ILE ILE SER ARG ARG SER SEQRES 9 B 403 LEU LEU ARG PHE LEU TYR THR GLN LEU GLU LEU TYR LEU SEQRES 10 B 403 ASN ASN LYS ASP ASP GLN LYS ARG SER ILE PHE GLN LYS SEQRES 11 B 403 SER GLU ARG GLY GLY PHE ARG LEU LYS GLU ASN VAL GLN SEQRES 12 B 403 PHE HIS LEU TYR ILE SER THR SER PRO CYS GLY ASP ALA SEQRES 13 B 403 ARG ILE PHE SER PRO HIS GLU PRO ILE LEU GLU GLU PRO SEQRES 14 B 403 ALA ASP ARG HIS PRO ASN ARG LYS ALA ARG GLY GLN LEU SEQRES 15 B 403 ARG THR LYS ILE GLU SER GLY GLU GLY THR ILE PRO VAL SEQRES 16 B 403 ARG SER ASN ALA SER ILE GLN THR TRP ASP GLY VAL LEU SEQRES 17 B 403 GLN GLY GLU ARG LEU LEU THR MET SER CYS SER ASP LYS SEQRES 18 B 403 ILE ALA ARG TRP ASN VAL VAL GLY ILE GLN GLY SER LEU SEQRES 19 B 403 LEU SER ILE PHE VAL GLU PRO ILE TYR PHE SER SER ILE SEQRES 20 B 403 ILE LEU GLY SER LEU TYR HIS GLY ASP HIS LEU SER ARG SEQRES 21 B 403 ALA MET TYR GLN ARG ILE SER ASN ILE GLU ASP LEU PRO SEQRES 22 B 403 PRO LEU TYR THR LEU ASN LYS PRO LEU LEU SER GLY ILE SEQRES 23 B 403 SER ASN ALA GLU ALA ARG GLN PRO GLY LYS ALA PRO ASN SEQRES 24 B 403 PHE SER VAL ASN TRP THR VAL GLY ASP SER ALA ILE GLU SEQRES 25 B 403 VAL ILE ASN ALA THR THR GLY LYS ASP GLU LEU GLY ARG SEQRES 26 B 403 ALA SER ARG LEU CYS LYS HIS ALA LEU TYR CYS ARG TRP SEQRES 27 B 403 MET ARG VAL HIS GLY LYS VAL PRO SER HIS LEU LEU ARG SEQRES 28 B 403 SER LYS ILE THR LYS PRO ASN VAL TYR HIS GLU SER LYS SEQRES 29 B 403 LEU ALA ALA LYS GLU TYR GLN ALA ALA LYS ALA ARG LEU SEQRES 30 B 403 PHE THR ALA PHE ILE LYS ALA GLY LEU GLY ALA TRP VAL SEQRES 31 B 403 GLU LYS PRO THR GLU GLN ASP GLN PHE SER LEU THR PRO HET ZN A 801 1 HET IHP A 901 36 HET ZN B 802 1 HET SO4 B 903 5 HET IHP B 902 36 HETNAM ZN ZINC ION HETNAM IHP INOSITOL HEXAKISPHOSPHATE HETNAM SO4 SULFATE ION HETSYN IHP MYO-INOSITOL HEXAKISPHOSPHATE; INOSITOL 1,2,3,4,5,6- HETSYN 2 IHP HEXAKISPHOSPHATE FORMUL 3 ZN 2(ZN 2+) FORMUL 4 IHP 2(C6 H18 O24 P6) FORMUL 6 SO4 O4 S 2- FORMUL 8 HOH *669(H2 O) HELIX 1 1 LEU A 319 THR A 339 1 21 HELIX 2 2 SER A 344 ARG A 348 5 5 HELIX 3 3 ASP A 362 ALA A 366 5 5 HELIX 4 4 ASN A 379 MET A 383 5 5 HELIX 5 5 HIS A 394 ASN A 417 1 24 HELIX 6 6 ASN A 417 SER A 424 1 8 HELIX 7 7 GLY A 452 PHE A 457 1 6 HELIX 8 8 THR A 501 GLN A 507 1 7 HELIX 9 9 SER A 515 GLY A 527 1 13 HELIX 10 10 GLN A 529 ILE A 535 1 7 HELIX 11 11 HIS A 552 TYR A 561 1 10 HELIX 12 12 GLN A 562 SER A 565 5 4 HELIX 13 13 CYS A 628 GLY A 641 1 14 HELIX 14 14 PRO A 644 LEU A 648 5 5 HELIX 15 15 VAL A 657 ALA A 664 1 8 HELIX 16 16 ALA A 665 ALA A 682 1 18 HELIX 17 17 PRO A 691 GLN A 696 5 6 HELIX 18 18 LEU B 319 LEU B 338 1 20 HELIX 19 19 SER B 344 ARG B 348 5 5 HELIX 20 20 ASP B 362 ALA B 366 5 5 HELIX 21 21 ASN B 379 MET B 383 5 5 HELIX 22 22 HIS B 394 ASN B 417 1 24 HELIX 23 23 ASN B 417 SER B 424 1 8 HELIX 24 24 GLY B 452 ILE B 456 5 5 HELIX 25 25 SER B 515 GLY B 527 1 13 HELIX 26 26 GLN B 529 ILE B 535 1 7 HELIX 27 27 HIS B 552 TYR B 561 1 10 HELIX 28 28 GLN B 562 SER B 565 5 4 HELIX 29 29 CYS B 628 VAL B 643 1 16 HELIX 30 30 PRO B 644 LEU B 648 5 5 HELIX 31 31 VAL B 657 ALA B 664 1 8 HELIX 32 32 ALA B 665 ALA B 682 1 18 HELIX 33 33 PRO B 691 GLN B 696 5 6 SHEET 1 A 8 LEU A 580 GLY A 583 0 SHEET 2 A 8 PHE A 542 LEU A 547 1 N LEU A 547 O SER A 582 SHEET 3 A 8 VAL A 440 ILE A 446 1 N PHE A 442 O SER A 543 SHEET 4 A 8 LEU A 352 THR A 359 -1 N GLY A 354 O TYR A 445 SHEET 5 A 8 LYS A 367 THR A 373 -1 O LYS A 367 N MET A 357 SHEET 6 A 8 PHE A 598 THR A 603 -1 O VAL A 600 N THR A 373 SHEET 7 A 8 GLU A 610 ASN A 613 -1 O ILE A 612 N SER A 599 SHEET 8 A 8 LYS A 618 ASP A 619 -1 O LYS A 618 N ASN A 613 SHEET 1 B 2 PHE A 426 LYS A 428 0 SHEET 2 B 2 PHE A 434 LEU A 436 -1 O ARG A 435 N GLN A 427 SHEET 1 C 3 ILE A 491 PRO A 492 0 SHEET 2 C 3 ARG A 481 ILE A 484 -1 N THR A 482 O ILE A 491 SHEET 3 C 3 LEU A 512 MET A 514 -1 O THR A 513 N LYS A 483 SHEET 1 D 8 LEU B 580 GLY B 583 0 SHEET 2 D 8 PHE B 542 LEU B 547 1 N ILE B 545 O LEU B 580 SHEET 3 D 8 GLN B 441 ILE B 446 1 N PHE B 442 O SER B 543 SHEET 4 D 8 LEU B 352 THR B 358 -1 N GLY B 354 O TYR B 445 SHEET 5 D 8 LYS B 367 THR B 373 -1 O LYS B 367 N MET B 357 SHEET 6 D 8 PHE B 598 THR B 603 -1 O TRP B 602 N VAL B 371 SHEET 7 D 8 GLU B 610 ASN B 613 -1 O ILE B 612 N SER B 599 SHEET 8 D 8 LYS B 618 ASP B 619 -1 O LYS B 618 N ASN B 613 SHEET 1 E 2 PHE B 426 LYS B 428 0 SHEET 2 E 2 PHE B 434 LEU B 436 -1 O ARG B 435 N GLN B 427 SHEET 1 F 2 ARG B 481 LYS B 483 0 SHEET 2 F 2 THR B 490 PRO B 492 -1 O ILE B 491 N THR B 482 LINK ND1 HIS A 394 ZN ZN A 801 1555 1555 2.01 LINK SG CYS A 451 ZN ZN A 801 1555 1555 2.31 LINK SG CYS A 516 ZN ZN A 801 1555 1555 2.33 LINK ZN ZN A 801 O HOH A1274 1555 1555 1.96 LINK ND1 HIS B 394 ZN ZN B 802 1555 1555 2.06 LINK SG CYS B 451 ZN ZN B 802 1555 1555 2.31 LINK SG CYS B 516 ZN ZN B 802 1555 1555 2.30 LINK ZN ZN B 802 O HOH B1166 1555 1555 2.00 CISPEP 1 PRO B 592 GLY B 593 0 -2.13 SITE 1 AC1 5 HIS A 394 CYS A 451 LYS A 483 CYS A 516 SITE 2 AC1 5 HOH A1274 SITE 1 AC2 5 HIS B 394 CYS B 451 LYS B 483 CYS B 516 SITE 2 AC2 5 HOH B1166 SITE 1 AC3 4 SER B 384 ARG B 386 LYS B 618 HOH B1089 SITE 1 AC4 35 ASN A 391 ILE A 397 ARG A 400 ARG A 401 SITE 2 AC4 35 THR A 513 LYS A 519 ARG A 522 GLY A 530 SITE 3 AC4 35 SER A 531 LYS A 629 TYR A 658 LYS A 662 SITE 4 AC4 35 TYR A 668 LYS A 672 TRP A 687 GLU A 689 SITE 5 AC4 35 LYS A 690 ASP A 695 HOH A 903 HOH A 904 SITE 6 AC4 35 HOH A 908 HOH A 909 HOH A 913 HOH A 914 SITE 7 AC4 35 HOH A 915 HOH A 917 HOH A 925 HOH A 932 SITE 8 AC4 35 HOH A 939 HOH A 993 HOH A1004 HOH A1017 SITE 9 AC4 35 HOH A1055 HOH A1066 HOH A1276 SITE 1 AC5 36 ASN B 391 ILE B 397 ARG B 400 ARG B 401 SITE 2 AC5 36 THR B 513 LYS B 519 ARG B 522 GLY B 530 SITE 3 AC5 36 SER B 531 LYS B 629 TYR B 658 LYS B 662 SITE 4 AC5 36 TYR B 668 LYS B 672 TRP B 687 GLU B 689 SITE 5 AC5 36 LYS B 690 ASP B 695 HOH B 905 HOH B 906 SITE 6 AC5 36 HOH B 910 HOH B 911 HOH B 915 HOH B 918 SITE 7 AC5 36 HOH B 921 HOH B 922 HOH B 926 HOH B 932 SITE 8 AC5 36 HOH B 949 HOH B 957 HOH B 961 HOH B 969 SITE 9 AC5 36 HOH B 975 HOH B 990 HOH B1036 HOH B1050 CRYST1 52.205 121.192 127.331 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019155 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008251 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007854 0.00000