PDB Short entry for 1ZZ7 HEADER OXIDOREDUCTASE 13-JUN-05 1ZZ7 TITLE CRYSTAL STRUCTURE OF FEII HPPE IN COMPLEX WITH SUBSTRATE FORM 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYDROXYPROPHYLPHOSPHONIC ACID EPOXIDASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.14.-.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES WEDMORENSIS; SOURCE 3 ORGANISM_TAXID: 43759; SOURCE 4 GENE: FOM4; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET24B KEYWDS SUBSTRATE-ENZYME COMPLEX, CUPIN, MONONUCLEAR IRON ENZYME, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR L.J.HIGGINS,F.YAN,P.LIU,H.W.LIU,C.L.DRENNAN REVDAT 5 23-AUG-23 1ZZ7 1 REMARK LINK REVDAT 4 13-JUL-11 1ZZ7 1 VERSN REVDAT 3 24-FEB-09 1ZZ7 1 VERSN REVDAT 2 22-NOV-05 1ZZ7 1 JRNL REVDAT 1 26-JUL-05 1ZZ7 0 JRNL AUTH L.J.HIGGINS,F.YAN,P.LIU,H.W.LIU,C.L.DRENNAN JRNL TITL STRUCTURAL INSIGHT INTO ANTIBIOTIC FOSFOMYCIN BIOSYNTHESIS JRNL TITL 2 BY A MONONUCLEAR IRON ENZYME JRNL REF NATURE V. 437 838 2005 JRNL REFN ISSN 0028-0836 JRNL PMID 16015285 JRNL DOI 10.1038/NATURE03924 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MLFL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.03 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 445830.970 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 28115 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.244 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1034 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.23 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4188 REMARK 3 BIN R VALUE (WORKING SET) : 0.3040 REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2592 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 145 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.05000 REMARK 3 B22 (A**2) : -3.05000 REMARK 3 B33 (A**2) : 6.10000 REMARK 3 B12 (A**2) : 1.33000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.29 REMARK 3 ESD FROM SIGMAA (A) : 0.24 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.32 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.24 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.880 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.990 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.560 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.780 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.460 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 46.12 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : S_HPP.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ION.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : S_HPP.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1ZZ7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JUL-05. REMARK 100 THE DEPOSITION ID IS D_1000033293. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 8-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28639 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.36200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: RIGID BODY REFINEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1ZZC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0M AMMONIUM SULFATE, 0.1M TRIS-HCL, REMARK 280 PH 8.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 146.90667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 73.45333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 110.18000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 36.72667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 183.63333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 146.90667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 73.45333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 36.72667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 110.18000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 183.63333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 14190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -142.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 129.84000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 74.96316 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 73.45333 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASN A 3 REMARK 465 THR A 4 REMARK 465 LYS A 5 REMARK 465 THR A 6 REMARK 465 ASP A 88 REMARK 465 GLU A 89 REMARK 465 ARG A 90 REMARK 465 PRO A 91 REMARK 465 ILE A 92 REMARK 465 LEU A 93 REMARK 465 LYS A 94 REMARK 465 GLY A 95 REMARK 465 VAL A 96 REMARK 465 ARG A 97 REMARK 465 ASP A 98 REMARK 465 ASN A 99 REMARK 465 VAL A 100 REMARK 465 ASP A 101 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ASN B 3 REMARK 465 THR B 4 REMARK 465 LYS B 5 REMARK 465 THR B 6 REMARK 465 ASP B 88 REMARK 465 GLU B 89 REMARK 465 ARG B 90 REMARK 465 PRO B 91 REMARK 465 ILE B 92 REMARK 465 LEU B 93 REMARK 465 LYS B 94 REMARK 465 GLY B 95 REMARK 465 VAL B 96 REMARK 465 ARG B 97 REMARK 465 ASP B 98 REMARK 465 ASN B 99 REMARK 465 VAL B 100 REMARK 465 ASP B 101 REMARK 465 TYR B 102 REMARK 465 ASP B 157 REMARK 465 LYS B 158 REMARK 465 GLU B 159 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 38 CG CD OE1 OE2 REMARK 470 TYR A 102 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASN A 106 CG OD1 ND2 REMARK 470 ASP A 130 CG OD1 OD2 REMARK 470 LYS A 133 CG CD CE NZ REMARK 470 GLU A 176 CG CD OE1 OE2 REMARK 470 GLU B 13 CG CD OE1 OE2 REMARK 470 SER B 31 OG REMARK 470 TYR B 103 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASN B 128 CG OD1 ND2 REMARK 470 ASP B 131 CG OD1 OD2 REMARK 470 LYS B 133 CG CD CE NZ REMARK 470 ASN B 135 CG OD1 ND2 REMARK 470 GLU B 148 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 126 O HOH A 1008 2.08 REMARK 500 O ALA B 28 O HOH B 1006 2.18 REMARK 500 ND2 ASN A 197 O HOH A 1028 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA A 139 N - CA - C ANGL. DEV. = -18.7 DEGREES REMARK 500 ALA B 139 N - CA - C ANGL. DEV. = -17.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 114 67.24 -155.34 REMARK 500 ASN A 160 77.25 -156.64 REMARK 500 HIS A 177 -11.66 71.94 REMARK 500 LYS A 186 128.30 -36.20 REMARK 500 ALA B 114 63.70 -152.67 REMARK 500 SER B 136 16.37 -51.69 REMARK 500 HIS B 177 -2.77 71.30 REMARK 500 LYS B 186 116.92 -35.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 199 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 138 NE2 REMARK 620 2 GLU A 142 OE2 92.8 REMARK 620 3 HIS A 180 NE2 115.3 93.3 REMARK 620 4 S0H A1002 O14 93.4 164.1 97.2 REMARK 620 5 HOH A1003 O 84.1 90.7 160.0 75.4 REMARK 620 6 HOH A1006 O 170.0 90.3 74.0 81.2 86.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 B 199 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 138 NE2 REMARK 620 2 GLU B 142 OE1 88.5 REMARK 620 3 HIS B 180 NE2 102.9 97.8 REMARK 620 4 S0H B1001 O6 166.2 89.3 90.9 REMARK 620 5 S0H B1001 O15 98.6 161.1 97.7 79.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 A 199 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 B 199 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE S0H B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE S0H A 1002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ZZ6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF APO-HPPE REMARK 900 RELATED ID: 1ZZ8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FEII HPPE IN COMPLEX WITH SUBSTRATE FORM 2 REMARK 900 RELATED ID: 1ZZ9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FEII HPPE HOLOENZYME REMARK 900 RELATED ID: 1ZZB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF COII HPPE IN COMPLEX WITH SUBSTRATE REMARK 900 RELATED ID: 1ZZC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF COII HPPE IN COMPLEX WITH TRIS BUFFER DBREF 1ZZ7 A 1 198 UNP Q56185 Q56185_STRWE 1 198 DBREF 1ZZ7 B 1 198 UNP Q56185 Q56185_STRWE 1 198 SEQRES 1 A 198 MET SER ASN THR LYS THR ALA SER THR GLY PHE ALA GLU SEQRES 2 A 198 LEU LEU LYS ASP ARG ARG GLU GLN VAL LYS MET ASP HIS SEQRES 3 A 198 ALA ALA LEU ALA SER LEU LEU GLY GLU THR PRO GLU THR SEQRES 4 A 198 VAL ALA ALA TRP GLU ASN GLY GLU GLY GLY GLU LEU THR SEQRES 5 A 198 LEU THR GLN LEU GLY ARG ILE ALA HIS VAL LEU GLY THR SEQRES 6 A 198 SER ILE GLY ALA LEU THR PRO PRO ALA GLY ASN ASP LEU SEQRES 7 A 198 ASP ASP GLY VAL ILE ILE GLN MET PRO ASP GLU ARG PRO SEQRES 8 A 198 ILE LEU LYS GLY VAL ARG ASP ASN VAL ASP TYR TYR VAL SEQRES 9 A 198 TYR ASN CYS LEU VAL ARG THR LYS ARG ALA PRO SER LEU SEQRES 10 A 198 VAL PRO LEU VAL VAL ASP VAL LEU THR ASP ASN PRO ASP SEQRES 11 A 198 ASP ALA LYS PHE ASN SER GLY HIS ALA GLY ASN GLU PHE SEQRES 12 A 198 LEU PHE VAL LEU GLU GLY GLU ILE HIS MET LYS TRP GLY SEQRES 13 A 198 ASP LYS GLU ASN PRO LYS GLU ALA LEU LEU PRO THR GLY SEQRES 14 A 198 ALA SER MET PHE VAL GLU GLU HIS VAL PRO HIS ALA PHE SEQRES 15 A 198 THR ALA ALA LYS GLY THR GLY SER ALA LYS LEU ILE ALA SEQRES 16 A 198 VAL ASN PHE SEQRES 1 B 198 MET SER ASN THR LYS THR ALA SER THR GLY PHE ALA GLU SEQRES 2 B 198 LEU LEU LYS ASP ARG ARG GLU GLN VAL LYS MET ASP HIS SEQRES 3 B 198 ALA ALA LEU ALA SER LEU LEU GLY GLU THR PRO GLU THR SEQRES 4 B 198 VAL ALA ALA TRP GLU ASN GLY GLU GLY GLY GLU LEU THR SEQRES 5 B 198 LEU THR GLN LEU GLY ARG ILE ALA HIS VAL LEU GLY THR SEQRES 6 B 198 SER ILE GLY ALA LEU THR PRO PRO ALA GLY ASN ASP LEU SEQRES 7 B 198 ASP ASP GLY VAL ILE ILE GLN MET PRO ASP GLU ARG PRO SEQRES 8 B 198 ILE LEU LYS GLY VAL ARG ASP ASN VAL ASP TYR TYR VAL SEQRES 9 B 198 TYR ASN CYS LEU VAL ARG THR LYS ARG ALA PRO SER LEU SEQRES 10 B 198 VAL PRO LEU VAL VAL ASP VAL LEU THR ASP ASN PRO ASP SEQRES 11 B 198 ASP ALA LYS PHE ASN SER GLY HIS ALA GLY ASN GLU PHE SEQRES 12 B 198 LEU PHE VAL LEU GLU GLY GLU ILE HIS MET LYS TRP GLY SEQRES 13 B 198 ASP LYS GLU ASN PRO LYS GLU ALA LEU LEU PRO THR GLY SEQRES 14 B 198 ALA SER MET PHE VAL GLU GLU HIS VAL PRO HIS ALA PHE SEQRES 15 B 198 THR ALA ALA LYS GLY THR GLY SER ALA LYS LEU ILE ALA SEQRES 16 B 198 VAL ASN PHE HET FE2 A 199 1 HET S0H A1002 8 HET FE2 B 199 1 HET S0H B1001 8 HETNAM FE2 FE (II) ION HETNAM S0H (S)-2-HYDROXYPROPYLPHOSPHONIC ACID FORMUL 3 FE2 2(FE 2+) FORMUL 4 S0H 2(C3 H9 O4 P) FORMUL 7 HOH *145(H2 O) HELIX 1 1 ALA A 7 VAL A 22 1 16 HELIX 2 2 ASP A 25 LEU A 32 1 8 HELIX 3 3 THR A 36 GLU A 44 1 9 HELIX 4 4 THR A 52 LEU A 63 1 12 HELIX 5 5 ILE A 67 THR A 71 5 5 HELIX 6 6 ASN A 128 ALA A 132 5 5 HELIX 7 7 ALA B 7 VAL B 22 1 16 HELIX 8 8 ASP B 25 GLY B 34 1 10 HELIX 9 9 THR B 36 GLU B 44 1 9 HELIX 10 10 THR B 52 LEU B 63 1 12 HELIX 11 11 ILE B 67 THR B 71 5 5 HELIX 12 12 ASN B 128 ALA B 132 5 5 SHEET 1 A 5 TYR A 103 CYS A 107 0 SHEET 2 A 5 VAL A 118 VAL A 124 -1 O VAL A 121 N ASN A 106 SHEET 3 A 5 ALA A 191 PHE A 198 -1 O ALA A 191 N VAL A 124 SHEET 4 A 5 ASN A 141 GLU A 148 -1 N PHE A 143 O VAL A 196 SHEET 5 A 5 SER A 171 VAL A 174 -1 O VAL A 174 N GLU A 142 SHEET 1 B 3 LYS A 162 LEU A 166 0 SHEET 2 B 3 ILE A 151 TRP A 155 -1 N ILE A 151 O LEU A 166 SHEET 3 B 3 HIS A 180 ALA A 184 -1 O THR A 183 N HIS A 152 SHEET 1 C 5 VAL B 104 CYS B 107 0 SHEET 2 C 5 VAL B 118 VAL B 124 -1 O ASP B 123 N VAL B 104 SHEET 3 C 5 ALA B 191 ASN B 197 -1 O ALA B 191 N VAL B 124 SHEET 4 C 5 GLU B 142 GLU B 148 -1 N PHE B 143 O VAL B 196 SHEET 5 C 5 SER B 171 VAL B 174 -1 O VAL B 174 N GLU B 142 SHEET 1 D 3 LYS B 162 LEU B 166 0 SHEET 2 D 3 ILE B 151 TRP B 155 -1 N ILE B 151 O LEU B 166 SHEET 3 D 3 HIS B 180 ALA B 184 -1 O THR B 183 N HIS B 152 LINK NE2 HIS A 138 FE FE2 A 199 1555 1555 1.78 LINK OE2 GLU A 142 FE FE2 A 199 1555 1555 2.18 LINK NE2 HIS A 180 FE FE2 A 199 1555 1555 2.19 LINK FE FE2 A 199 O14 S0H A1002 1555 1555 2.12 LINK FE FE2 A 199 O HOH A1003 1555 1555 2.60 LINK FE FE2 A 199 O HOH A1006 1555 1555 2.18 LINK NE2 HIS B 138 FE FE2 B 199 1555 1555 1.73 LINK OE1 GLU B 142 FE FE2 B 199 1555 1555 2.09 LINK NE2 HIS B 180 FE FE2 B 199 1555 1555 2.26 LINK FE FE2 B 199 O6 S0H B1001 1555 1555 2.02 LINK FE FE2 B 199 O15 S0H B1001 1555 1555 2.10 SITE 1 AC1 7 ASN A 135 HIS A 138 GLU A 142 HIS A 180 SITE 2 AC1 7 S0H A1002 HOH A1003 HOH A1006 SITE 1 AC2 4 HIS B 138 GLU B 142 HIS B 180 S0H B1001 SITE 1 AC3 8 LYS A 23 TYR B 105 ASN B 135 HIS B 138 SITE 2 AC3 8 GLU B 142 HIS B 180 FE2 B 199 HOH B1004 SITE 1 AC4 8 TYR A 105 ASN A 135 HIS A 138 HIS A 180 SITE 2 AC4 8 FE2 A 199 HOH A1003 HOH A1006 LYS B 23 CRYST1 86.560 86.560 220.360 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011553 0.006670 0.000000 0.00000 SCALE2 0.000000 0.013340 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004538 0.00000