PDB Short entry for 2A03 HEADER OXIDOREDUCTASE 15-JUN-05 2A03 TITLE SUPEROXIDE DISMUTASE PROTEIN FROM PLASMODIUM BERGHEI COMPND MOL_ID: 1; COMPND 2 MOLECULE: FE-SUPEROXIDE DISMUTASE HOMOLOG; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.15.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM BERGHEI; SOURCE 3 ORGANISM_TAXID: 5821; SOURCE 4 GENE: PB000490.02.0; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE INITIATIVE, STRUCTURAL KEYWDS 2 GENOMICS OF PATHOGENIC PROTOZOA CONSORTIUM, SGPP, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.A.HOLMES,E.A.MERRITT,STRUCTURAL GENOMICS OF PATHOGENIC PROTOZOA AUTHOR 2 CONSORTIUM (SGPP) REVDAT 6 23-AUG-23 2A03 1 REMARK SEQADV LINK REVDAT 5 11-OCT-17 2A03 1 REMARK REVDAT 4 13-JUL-11 2A03 1 VERSN REVDAT 3 24-FEB-09 2A03 1 VERSN REVDAT 2 02-AUG-05 2A03 1 REMARK REVDAT 1 21-JUN-05 2A03 0 JRNL AUTH M.A.HOLMES,E.A.MERRITT, JRNL AUTH 2 STRUCTURAL GENOMICS OF PATHOGENIC PROTOZOA CONSORTIUM (SGPP) JRNL TITL HYPOTHETICAL PROTEIN FROM PLASMODIUM BERGHEI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.33 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.2.0005 24/04/2001 REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.33 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 29383 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.081 REMARK 3 FREE R VALUE TEST SET COUNT : 1493 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.33 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.39 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1737 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.39 REMARK 3 BIN R VALUE (WORKING SET) : 0.2240 REMARK 3 BIN FREE R VALUE SET COUNT : 107 REMARK 3 BIN FREE R VALUE : 0.3320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3133 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 256 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.33200 REMARK 3 B22 (A**2) : 1.33200 REMARK 3 B33 (A**2) : -1.99700 REMARK 3 B12 (A**2) : 0.66600 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3260 ; 0.010 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2732 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4447 ; 1.087 ; 1.899 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6391 ; 0.707 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 392 ; 5.484 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 170 ;33.826 ;25.412 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 495 ;12.662 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ; 6.173 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 465 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3696 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 668 ; 0.000 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 757 ; 0.208 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2668 ; 0.180 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1610 ; 0.190 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): 1572 ; 0.089 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 346 ; 0.188 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 13 ; 0.170 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 23 ; 0.223 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.308 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2527 ; 0.896 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 807 ; 0.167 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3134 ; 1.175 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2734 ; 0.513 ; 3.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1601 ; 1.888 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2680 ; 0.570 ; 4.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1313 ; 2.641 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3657 ; 1.091 ; 6.000 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 197 REMARK 3 ORIGIN FOR THE GROUP (A): 30.2700 30.5810 122.2670 REMARK 3 T TENSOR REMARK 3 T11: 0.0016 T22: 0.0132 REMARK 3 T33: -0.0023 T12: 0.0220 REMARK 3 T13: -0.0003 T23: -0.0133 REMARK 3 L TENSOR REMARK 3 L11: 1.1720 L22: 0.6190 REMARK 3 L33: 2.0785 L12: -0.0630 REMARK 3 L13: 0.2620 L23: -0.3141 REMARK 3 S TENSOR REMARK 3 S11: -0.0366 S12: -0.0468 S13: 0.1608 REMARK 3 S21: 0.0235 S22: -0.0086 S23: 0.0157 REMARK 3 S31: -0.1094 S32: 0.0184 S33: 0.0453 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 197 REMARK 3 ORIGIN FOR THE GROUP (A): 28.5050 29.5240 136.4780 REMARK 3 T TENSOR REMARK 3 T11: 0.0353 T22: 0.0043 REMARK 3 T33: -0.0213 T12: 0.0432 REMARK 3 T13: 0.0080 T23: 0.0161 REMARK 3 L TENSOR REMARK 3 L11: 1.5276 L22: 0.9766 REMARK 3 L33: 4.0993 L12: -0.5094 REMARK 3 L13: -0.0564 L23: 0.2435 REMARK 3 S TENSOR REMARK 3 S11: 0.0795 S12: 0.1412 S13: 0.1845 REMARK 3 S21: 0.0100 S22: -0.0379 S23: -0.1936 REMARK 3 S31: -0.0909 S32: 0.2673 S33: -0.0416 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL PLUS MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2A03 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JUN-05. REMARK 100 THE DEPOSITION ID IS D_1000033324. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAR-05 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29521 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.330 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 12.90 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 25.7040 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.33 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.41 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.46500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.952 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR 2.5 REMARK 200 STARTING MODEL: PDB ENTRY 1ISC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.4 UL PROTEIN 20 MG/ML, 0.4 UL REMARK 280 CRYSTALLIZATION BUFFER, 100MM ZN ACETATE, 14% PEG 8000, 80MM NA REMARK 280 CITRATE, PH 4.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 138.62333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 69.31167 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 103.96750 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 34.65583 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 173.27917 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 138.62333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 69.31167 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 34.65583 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 103.96750 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 173.27917 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -92.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 52.55550 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 91.02880 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 242.59083 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 LYS A 198 REMARK 465 MET B -7 REMARK 465 ALA B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 LYS B 198 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 LYS A 7 CG CD CE NZ REMARK 470 LYS A 38 CG CD CE NZ REMARK 470 LYS A 58 CG CD CE NZ REMARK 470 GLU A 190 CG CD OE1 OE2 REMARK 470 ASN A 197 CB CG OD1 ND2 REMARK 470 MET B 1 CG SD CE REMARK 470 LYS B 7 CG CD CE NZ REMARK 470 LYS B 58 CG CD CE NZ REMARK 470 GLU B 190 CG CD OE1 OE2 REMARK 470 LYS B 193 CG CD CE NZ REMARK 470 ASN B 197 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 85 -147.32 -121.75 REMARK 500 ASP A 141 -106.56 55.50 REMARK 500 ARG A 169 -125.27 51.74 REMARK 500 LYS B 30 -61.92 -109.22 REMARK 500 CYS B 85 -146.41 -126.05 REMARK 500 ASP B 141 -112.25 54.26 REMARK 500 ARG B 169 -124.39 48.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN THE IDENTITY OF THE METAL IONS AT SITES 200 AND 300 IS REMARK 600 UNCERTAIN. THIS MODEL CONTAINS MN IONS AT THESE SITES, BUT X-RAY REMARK 600 FLUORESCENCE SCANS INDICATE THAT SOME FRACTION MAY INSTEAD BE FE REMARK 600 IONS. REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 600 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 18 NE2 REMARK 620 2 HOH A 515 O 76.4 REMARK 620 3 HOH A 516 O 115.4 90.8 REMARK 620 4 GLU B 22 OE2 108.5 81.1 132.0 REMARK 620 5 GLU B 22 OE1 157.3 103.8 87.3 50.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 200 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 27 NE2 REMARK 620 2 HIS A 74 NE2 96.3 REMARK 620 3 ASP A 158 OD2 89.4 113.2 REMARK 620 4 HIS A 162 NE2 91.9 124.5 121.6 REMARK 620 5 HOH A 301 O 175.1 85.1 85.7 91.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 300 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 27 NE2 REMARK 620 2 HIS B 74 NE2 100.7 REMARK 620 3 ASP B 158 OD2 91.3 113.3 REMARK 620 4 HIS B 162 NE2 91.8 127.2 117.5 REMARK 620 5 HOH B 302 O 171.8 82.0 80.5 92.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 600 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: PBER005319AAA RELATED DB: TARGETDB DBREF 2A03 A 1 198 UNP Q4YW77 Q4YW77_PLABE 1 198 DBREF 2A03 B 1 198 UNP Q4YW77 Q4YW77_PLABE 1 198 SEQADV 2A03 MET A -7 UNP Q4YW77 CLONING ARTIFACT SEQADV 2A03 ALA A -6 UNP Q4YW77 CLONING ARTIFACT SEQADV 2A03 HIS A -5 UNP Q4YW77 EXPRESSION TAG SEQADV 2A03 HIS A -4 UNP Q4YW77 EXPRESSION TAG SEQADV 2A03 HIS A -3 UNP Q4YW77 EXPRESSION TAG SEQADV 2A03 HIS A -2 UNP Q4YW77 EXPRESSION TAG SEQADV 2A03 HIS A -1 UNP Q4YW77 EXPRESSION TAG SEQADV 2A03 HIS A 0 UNP Q4YW77 EXPRESSION TAG SEQADV 2A03 MET B -7 UNP Q4YW77 CLONING ARTIFACT SEQADV 2A03 ALA B -6 UNP Q4YW77 CLONING ARTIFACT SEQADV 2A03 HIS B -5 UNP Q4YW77 EXPRESSION TAG SEQADV 2A03 HIS B -4 UNP Q4YW77 EXPRESSION TAG SEQADV 2A03 HIS B -3 UNP Q4YW77 EXPRESSION TAG SEQADV 2A03 HIS B -2 UNP Q4YW77 EXPRESSION TAG SEQADV 2A03 HIS B -1 UNP Q4YW77 EXPRESSION TAG SEQADV 2A03 HIS B 0 UNP Q4YW77 EXPRESSION TAG SEQRES 1 A 206 MET ALA HIS HIS HIS HIS HIS HIS MET ALA ILE THR LEU SEQRES 2 A 206 PRO LYS LEU LYS TYR ALA LEU ASN ALA LEU SER PRO HIS SEQRES 3 A 206 ILE SER GLU GLU THR LEU SER PHE HIS TYR ASN LYS HIS SEQRES 4 A 206 HIS ALA GLY TYR VAL ASN LYS LEU ASN GLY LEU ILE LYS SEQRES 5 A 206 ASP THR PRO LEU ALA ASN LYS SER LEU THR ASP ILE LEU SEQRES 6 A 206 LYS GLU SER THR GLY ALA ILE PHE ASN ASN ALA ALA GLN SEQRES 7 A 206 ILE TRP ASN HIS SER PHE TYR TRP ASP SER MET GLY PRO SEQRES 8 A 206 ASN CYS GLY GLY GLU PRO HIS GLY GLU ILE LYS GLU LYS SEQRES 9 A 206 ILE GLN GLU ASP PHE GLY SER PHE ASN ASN PHE LYS ASP SEQRES 10 A 206 GLN PHE SER ASN VAL LEU CYS GLY HIS PHE GLY SER GLY SEQRES 11 A 206 TRP GLY TRP LEU ALA LEU ASN LYS ASN ASN LYS LEU VAL SEQRES 12 A 206 ILE LEU GLN THR HIS ASP ALA GLY ASN PRO ILE LYS GLU SEQRES 13 A 206 ASN THR GLY ILE PRO ILE LEU THR CYS ASP VAL TRP GLU SEQRES 14 A 206 HIS ALA TYR TYR ILE ASP TYR ARG ASN ASP ARG LEU SER SEQRES 15 A 206 TYR VAL LYS ALA TRP TRP ASN LEU VAL ASN TRP ASN PHE SEQRES 16 A 206 ALA ASN GLU ASN LEU LYS ASN ALA LEU ASN LYS SEQRES 1 B 206 MET ALA HIS HIS HIS HIS HIS HIS MET ALA ILE THR LEU SEQRES 2 B 206 PRO LYS LEU LYS TYR ALA LEU ASN ALA LEU SER PRO HIS SEQRES 3 B 206 ILE SER GLU GLU THR LEU SER PHE HIS TYR ASN LYS HIS SEQRES 4 B 206 HIS ALA GLY TYR VAL ASN LYS LEU ASN GLY LEU ILE LYS SEQRES 5 B 206 ASP THR PRO LEU ALA ASN LYS SER LEU THR ASP ILE LEU SEQRES 6 B 206 LYS GLU SER THR GLY ALA ILE PHE ASN ASN ALA ALA GLN SEQRES 7 B 206 ILE TRP ASN HIS SER PHE TYR TRP ASP SER MET GLY PRO SEQRES 8 B 206 ASN CYS GLY GLY GLU PRO HIS GLY GLU ILE LYS GLU LYS SEQRES 9 B 206 ILE GLN GLU ASP PHE GLY SER PHE ASN ASN PHE LYS ASP SEQRES 10 B 206 GLN PHE SER ASN VAL LEU CYS GLY HIS PHE GLY SER GLY SEQRES 11 B 206 TRP GLY TRP LEU ALA LEU ASN LYS ASN ASN LYS LEU VAL SEQRES 12 B 206 ILE LEU GLN THR HIS ASP ALA GLY ASN PRO ILE LYS GLU SEQRES 13 B 206 ASN THR GLY ILE PRO ILE LEU THR CYS ASP VAL TRP GLU SEQRES 14 B 206 HIS ALA TYR TYR ILE ASP TYR ARG ASN ASP ARG LEU SER SEQRES 15 B 206 TYR VAL LYS ALA TRP TRP ASN LEU VAL ASN TRP ASN PHE SEQRES 16 B 206 ALA ASN GLU ASN LEU LYS ASN ALA LEU ASN LYS HET MN A 200 1 HET ZN A 600 1 HET MN B 300 1 HETNAM MN MANGANESE (II) ION HETNAM ZN ZINC ION FORMUL 3 MN 2(MN 2+) FORMUL 4 ZN ZN 2+ FORMUL 6 HOH *256(H2 O) HELIX 1 1 SER A 20 LYS A 30 1 11 HELIX 2 2 LYS A 30 LYS A 44 1 15 HELIX 3 3 SER A 52 SER A 60 1 9 HELIX 4 4 THR A 61 SER A 80 1 20 HELIX 5 5 GLY A 91 GLY A 102 1 12 HELIX 6 6 SER A 103 HIS A 118 1 16 HELIX 7 7 TRP A 160 ALA A 163 5 4 HELIX 8 8 TYR A 164 ARG A 169 1 6 HELIX 9 9 ASP A 171 TRP A 180 1 10 HELIX 10 10 ASN A 184 ASN A 197 1 14 HELIX 11 11 SER B 20 LYS B 30 1 11 HELIX 12 12 LYS B 30 LYS B 44 1 15 HELIX 13 13 SER B 52 SER B 60 1 9 HELIX 14 14 THR B 61 SER B 80 1 20 HELIX 15 15 GLY B 91 GLY B 102 1 12 HELIX 16 16 SER B 103 HIS B 118 1 16 HELIX 17 17 TRP B 160 ALA B 163 5 4 HELIX 18 18 TYR B 164 ARG B 169 1 6 HELIX 19 19 ASP B 171 TRP B 180 1 10 HELIX 20 20 ASN B 184 ASN B 197 1 14 SHEET 1 A 3 LEU A 134 HIS A 140 0 SHEET 2 A 3 GLY A 122 LEU A 128 -1 N ALA A 127 O VAL A 135 SHEET 3 A 3 ILE A 152 ASP A 158 -1 O ILE A 154 N LEU A 126 SHEET 1 B 3 LEU B 134 HIS B 140 0 SHEET 2 B 3 GLY B 122 LEU B 128 -1 N TRP B 125 O LEU B 137 SHEET 3 B 3 ILE B 152 ASP B 158 -1 O ILE B 154 N LEU B 126 LINK NE2 HIS A 18 ZN ZN A 600 1555 1555 2.34 LINK NE2 HIS A 27 MN MN A 200 1555 1555 2.15 LINK NE2 HIS A 74 MN MN A 200 1555 1555 2.08 LINK OD2 ASP A 158 MN MN A 200 1555 1555 1.89 LINK NE2 HIS A 162 MN MN A 200 1555 1555 2.12 LINK MN MN A 200 O HOH A 301 1555 1555 2.31 LINK O HOH A 515 ZN ZN A 600 1555 1555 2.28 LINK O HOH A 516 ZN ZN A 600 1555 1555 2.49 LINK ZN ZN A 600 OE2 GLU B 22 1555 10666 2.69 LINK ZN ZN A 600 OE1 GLU B 22 1555 10666 2.51 LINK NE2 HIS B 27 MN MN B 300 1555 1555 2.14 LINK NE2 HIS B 74 MN MN B 300 1555 1555 2.09 LINK OD2 ASP B 158 MN MN B 300 1555 1555 2.00 LINK NE2 HIS B 162 MN MN B 300 1555 1555 2.03 LINK MN MN B 300 O HOH B 302 1555 1555 2.19 CISPEP 1 SER A 16 PRO A 17 0 1.62 CISPEP 2 SER B 16 PRO B 17 0 3.81 SITE 1 AC1 5 HIS A 27 HIS A 74 ASP A 158 HIS A 162 SITE 2 AC1 5 HOH A 301 SITE 1 AC2 5 HIS B 27 HIS B 74 ASP B 158 HIS B 162 SITE 2 AC2 5 HOH B 302 SITE 1 AC3 4 HIS A 18 HOH A 515 HOH A 516 GLU B 22 CRYST1 105.111 105.111 207.935 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009514 0.005493 0.000000 0.00000 SCALE2 0.000000 0.010986 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004809 0.00000