PDB Short entry for 2A11 HEADER TRANSCRIPTION,TRANSLATION,HYDROLASE 17-JUN-05 2A11 TITLE CRYSTAL STRUCTURE OF NUCLEASE DOMAIN OF RIBONUCLASE III FROM TITLE 2 MYCOBACTERIUM TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBONUCLEASE III; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: NUCLEASE DOMAIN; COMPND 5 SYNONYM: RNASE III; COMPND 6 EC: 3.1.26.3; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: RNC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS RIBONUCLEASE; RNASE III; NUCLEASE DOMAIN; STRUCTURAL GENOMICS, PSI, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE; MYCOBACTERIUM TUBERCULOSIS STRUCTURAL KEYWDS 3 PROTEOMICS PROJECT (XMTB), TRANSCRIPTION, TRANSLATION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.L.AKEY,J.M.BERGER,MYCOBACTERIUM TUBERCULOSIS STRUCTURAL PROTEOMICS AUTHOR 2 PROJECT (XMTB) REVDAT 7 14-FEB-24 2A11 1 REMARK SEQADV LINK REVDAT 6 11-OCT-17 2A11 1 REMARK REVDAT 5 16-NOV-11 2A11 1 HETATM REVDAT 4 13-JUL-11 2A11 1 VERSN REVDAT 3 24-FEB-09 2A11 1 VERSN REVDAT 2 25-OCT-05 2A11 1 JRNL REMARK REVDAT 1 05-JUL-05 2A11 0 JRNL AUTH D.L.AKEY,J.M.BERGER JRNL TITL STRUCTURE OF THE NUCLEASE DOMAIN OF RIBONUCLEASE III FROM M. JRNL TITL 2 TUBERCULOSIS AT 2.1 A JRNL REF PROTEIN SCI. V. 14 2744 2005 JRNL REFN ISSN 0961-8368 JRNL PMID 16155207 JRNL DOI 10.1110/PS.051665905 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 15447 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.259 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 774 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1158 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 161 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.35500 REMARK 3 B22 (A**2) : -3.35500 REMARK 3 B33 (A**2) : 6.71000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 3.720 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 5.215 ; 4.500 REMARK 3 SIDE-CHAIN BOND (A**2) : 5.729 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 7.726 ; 6.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 84.10 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : CNS_TOPPAR:PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CNS_TOPPAR:DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : CNS_TOPPAR:WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : CNS_TOPPAR:ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : CNS_TOPPAR:PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : CNS_TOPPAR:DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : CNS_TOPPAR:WATER.TOP REMARK 3 TOPOLOGY FILE 4 : CNS_TOPPAR:ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2A11 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUN-05. REMARK 100 THE DEPOSITION ID IS D_1000033357. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-SEP-02; 04-AUG-03 REMARK 200 TEMPERATURE (KELVIN) : 100; NULL REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; N REMARK 200 RADIATION SOURCE : ALS; NULL REMARK 200 BEAMLINE : 8.3.1; NULL REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793, 1.000, 1.100; NULL REMARK 200 MONOCHROMATOR : ALS 8.3.1; ALS 8.3.1 REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4; ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15508 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 28.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.25200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 3000, 100 MM CA-ACETATE, 100 REMARK 280 MM TRIS-HCL, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.00650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 36.29450 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 36.29450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 72.00975 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 36.29450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 36.29450 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 24.00325 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 36.29450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 36.29450 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 72.00975 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 36.29450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 36.29450 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 24.00325 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 48.00650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE SECOND PART OF THE BIOLOGICAL ASSEMBLY IS GENERATED BY REMARK 300 THE TWO FOLD SYMMETRY OPERATOR: -X, -Y, -Z+1/2 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 2650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 72.58900 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 72.58900 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 144.01950 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1003 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 LEU A 156 REMARK 465 GLY A 157 REMARK 465 ALA A 158 REMARK 465 GLY A 159 REMARK 465 LEU A 160 REMARK 465 ASP A 161 REMARK 465 TRP A 162 REMARK 465 LYS A 163 REMARK 465 THR A 164 REMARK 465 SER A 165 REMARK 465 LEU A 166 REMARK 465 GLN A 167 REMARK 465 GLU A 168 REMARK 465 LEU A 169 REMARK 465 THR A 170 REMARK 465 ALA A 171 REMARK 465 ALA A 172 REMARK 465 ARG A 173 REMARK 465 GLY A 174 REMARK 465 LEU A 175 REMARK 465 GLY A 176 REMARK 465 ALA A 177 REMARK 465 PRO A 178 REMARK 465 SER A 179 REMARK 465 TYR A 180 REMARK 465 LEU A 181 REMARK 465 VAL A 182 REMARK 465 THR A 183 REMARK 465 SER A 184 REMARK 465 THR A 185 REMARK 465 GLY A 186 REMARK 465 PRO A 187 REMARK 465 ASP A 188 REMARK 465 HIS A 189 REMARK 465 ASP A 190 REMARK 465 LYS A 191 REMARK 465 GLU A 192 REMARK 465 PHE A 193 REMARK 465 THR A 194 REMARK 465 ALA A 195 REMARK 465 VAL A 196 REMARK 465 VAL A 197 REMARK 465 VAL A 198 REMARK 465 VAL A 199 REMARK 465 MET A 200 REMARK 465 ASP A 201 REMARK 465 SER A 202 REMARK 465 GLU A 203 REMARK 465 TYR A 204 REMARK 465 GLY A 205 REMARK 465 SER A 206 REMARK 465 GLY A 207 REMARK 465 VAL A 208 REMARK 465 GLY A 209 REMARK 465 ARG A 210 REMARK 465 SER A 211 REMARK 465 LYS A 212 REMARK 465 LYS A 213 REMARK 465 GLU A 214 REMARK 465 ALA A 215 REMARK 465 GLU A 216 REMARK 465 GLN A 217 REMARK 465 LYS A 218 REMARK 465 ALA A 219 REMARK 465 ALA A 220 REMARK 465 ALA A 221 REMARK 465 ALA A 222 REMARK 465 ALA A 223 REMARK 465 TRP A 224 REMARK 465 LYS A 225 REMARK 465 ALA A 226 REMARK 465 LEU A 227 REMARK 465 GLU A 228 REMARK 465 VAL A 229 REMARK 465 LEU A 230 REMARK 465 ASP A 231 REMARK 465 ASN A 232 REMARK 465 ALA A 233 REMARK 465 MET A 234 REMARK 465 PRO A 235 REMARK 465 GLY A 236 REMARK 465 LYS A 237 REMARK 465 THR A 238 REMARK 465 SER A 239 REMARK 465 ALA A 240 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 28 OH TYR A 32 2.04 REMARK 500 O HOH A 1016 O HOH A 1099 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 3 -70.62 24.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 28 0.27 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 44 OE2 REMARK 620 2 GLU A 123 OE1 117.3 REMARK 620 3 HOH A1008 O 70.2 112.0 REMARK 620 4 HOH A1009 O 170.5 72.1 108.2 REMARK 620 5 HOH A1010 O 73.0 163.0 83.8 97.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1004 O REMARK 620 2 HOH A1005 O 100.2 REMARK 620 3 HOH A1006 O 102.2 80.7 REMARK 620 4 HOH A1007 O 95.8 163.9 96.5 REMARK 620 5 HOH A1010 O 98.9 121.5 145.9 54.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: RV2925C RELATED DB: TARGETDB DBREF 2A11 A 1 240 UNP P66666 RNC_MYCTU 1 240 SEQADV 2A11 GLY A -1 UNP P66666 CLONING ARTIFACT SEQADV 2A11 ALA A 0 UNP P66666 CLONING ARTIFACT SEQRES 1 A 242 GLY ALA MET ILE ARG SER ARG GLN PRO LEU LEU ASP ALA SEQRES 2 A 242 LEU GLY VAL ASP LEU PRO ASP GLU LEU LEU SER LEU ALA SEQRES 3 A 242 LEU THR HIS ARG SER TYR ALA TYR GLU ASN GLY GLY LEU SEQRES 4 A 242 PRO THR ASN GLU ARG LEU GLU PHE LEU GLY ASP ALA VAL SEQRES 5 A 242 LEU GLY LEU THR ILE THR ASP ALA LEU PHE HIS ARG HIS SEQRES 6 A 242 PRO ASP ARG SER GLU GLY ASP LEU ALA LYS LEU ARG ALA SEQRES 7 A 242 SER VAL VAL ASN THR GLN ALA LEU ALA ASP VAL ALA ARG SEQRES 8 A 242 ARG LEU CYS ALA GLU GLY LEU GLY VAL HIS VAL LEU LEU SEQRES 9 A 242 GLY ARG GLY GLU ALA ASN THR GLY GLY ALA ASP LYS SER SEQRES 10 A 242 SER ILE LEU ALA ASP GLY MET GLU SER LEU LEU GLY ALA SEQRES 11 A 242 ILE TYR LEU GLN HIS GLY MET GLU LYS ALA ARG GLU VAL SEQRES 12 A 242 ILE LEU ARG LEU PHE GLY PRO LEU LEU ASP ALA ALA PRO SEQRES 13 A 242 THR LEU GLY ALA GLY LEU ASP TRP LYS THR SER LEU GLN SEQRES 14 A 242 GLU LEU THR ALA ALA ARG GLY LEU GLY ALA PRO SER TYR SEQRES 15 A 242 LEU VAL THR SER THR GLY PRO ASP HIS ASP LYS GLU PHE SEQRES 16 A 242 THR ALA VAL VAL VAL VAL MET ASP SER GLU TYR GLY SER SEQRES 17 A 242 GLY VAL GLY ARG SER LYS LYS GLU ALA GLU GLN LYS ALA SEQRES 18 A 242 ALA ALA ALA ALA TRP LYS ALA LEU GLU VAL LEU ASP ASN SEQRES 19 A 242 ALA MET PRO GLY LYS THR SER ALA HET CA A1001 1 HET CA A1002 1 HETNAM CA CALCIUM ION FORMUL 2 CA 2(CA 2+) FORMUL 4 HOH *161(H2 O) HELIX 1 1 ARG A 5 GLY A 13 1 9 HELIX 2 2 PRO A 17 LEU A 25 1 9 HELIX 3 3 HIS A 27 ASN A 34 1 8 HELIX 4 4 ASN A 40 HIS A 63 1 24 HELIX 5 5 SER A 67 ASN A 80 1 14 HELIX 6 6 ASN A 80 LEU A 91 1 12 HELIX 7 7 LEU A 96 VAL A 100 5 5 HELIX 8 8 GLY A 103 THR A 109 1 7 HELIX 9 9 GLY A 110 ASP A 113 5 4 HELIX 10 10 LYS A 114 GLY A 134 1 21 HELIX 11 11 GLY A 134 PHE A 146 1 13 HELIX 12 12 PHE A 146 ALA A 153 1 8 LINK OE2 GLU A 44 CA CA A1001 1555 1555 2.29 LINK OE1 GLU A 123 CA CA A1001 1555 1555 2.79 LINK CA CA A1001 O HOH A1008 1555 1555 2.84 LINK CA CA A1001 O HOH A1009 1555 1555 2.60 LINK CA CA A1001 O HOH A1010 1555 1555 2.88 LINK CA CA A1002 O HOH A1004 1555 1555 2.28 LINK CA CA A1002 O HOH A1005 1555 1555 2.52 LINK CA CA A1002 O HOH A1006 1555 1555 2.83 LINK CA CA A1002 O HOH A1007 1555 1555 2.48 LINK CA CA A1002 O HOH A1010 1555 1555 3.30 SITE 1 AC1 6 GLU A 44 ASP A 120 GLU A 123 HOH A1008 SITE 2 AC1 6 HOH A1009 HOH A1010 SITE 1 AC2 4 HOH A1004 HOH A1005 HOH A1006 HOH A1007 CRYST1 72.589 72.589 96.013 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013776 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013776 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010415 0.00000