PDB Short entry for 2A24
HEADER    TRANSCRIPTION                           21-JUN-05   2A24              
TITLE     HADDOCK STRUCTURE OF HIF-2A/ARNT PAS-B HETERODIMER                    
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: ENDOTHELIAL PAS DOMAIN PROTEIN 1;                          
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: C-TERMINAL PAS DOMAIN (PAS-B);                             
COMPND   5 SYNONYM: EPAS-1, MEMBER OF PAS PROTEIN 2, MOP2, HYPOXIA-INDUCIBLE    
COMPND   6 FACTOR 2 ALPHA, HIF-2 ALPHA, HIF2 ALPHA, HIF-1 ALPHA-LIKE FACTOR,    
COMPND   7 HLF;                                                                 
COMPND   8 MOL_ID: 2;                                                           
COMPND   9 MOLECULE: ARYL HYDROCARBON RECEPTOR NUCLEAR TRANSLOCATOR;            
COMPND  10 CHAIN: B;                                                            
COMPND  11 FRAGMENT: C-TERMINAL PAS DOMAIN (PAS-B);                             
COMPND  12 SYNONYM: ARNT PROTEIN, DIOXIN RECEPTOR, NUCLEAR TRANSLOCATOR,        
COMPND  13 HYPOXIA-INDUCIBLE FACTOR 1 BETA, HIF-1 BETA                          
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 MOL_ID: 2;                                                           
SOURCE   6 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   7 ORGANISM_COMMON: HUMAN;                                              
SOURCE   8 ORGANISM_TAXID: 9606                                                 
KEYWDS    ARNT, HIF, HYPOXIA, TRANSCRIPTION, PAS                                
EXPDTA    SOLUTION NMR                                                          
NUMMDL    20                                                                    
AUTHOR    P.B.CARD,P.J.ERBEL,K.H.GARDNER                                        
REVDAT   4   09-MAR-22 2A24    1       REMARK                                   
REVDAT   3   24-FEB-09 2A24    1       VERSN                                    
REVDAT   2   22-AUG-06 2A24    1       EXPDTA REMARK                            
REVDAT   1   17-JAN-06 2A24    0                                                
JRNL        AUTH   P.B.CARD,P.J.ERBEL,K.H.GARDNER                               
JRNL        TITL   STRUCTURAL BASIS OF ARNT PAS-B DIMERIZATION: USE OF A COMMON 
JRNL        TITL 2 BETA-SHEET INTERFACE FOR HETERO- AND HOMODIMERIZATION.       
JRNL        REF    J.MOL.BIOL.                   V. 353   664 2005              
JRNL        REFN                   ISSN 0022-2836                               
JRNL        PMID   16181639                                                     
JRNL        DOI    10.1016/J.JMB.2005.08.043                                    
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : HADDOCK 1.2, CNS 1.1                                 
REMARK   3   AUTHORS     : BONVIN (HADDOCK),                                    
REMARK   3  BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE,JIANG,KUSZEWSKI,   
REMARK   3  NILGES, PANNU,READ,RICE,SIMONSON,WARREN (CNS)                       
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 2A24 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUL-05.                  
REMARK 100 THE DEPOSITION ID IS D_1000033396.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : NULL                               
REMARK 210  PH                             : 7.5                                
REMARK 210  IONIC STRENGTH                 : 50MM TRIS, 17MM NACL, 5MM DTT      
REMARK 210  PRESSURE                       : NULL                               
REMARK 210  SAMPLE CONTENTS                : 250 MICRO M (15N)HIF-2ALPHA PAS    
REMARK 210                                   -B (240-350) + 1MM ARNT PAS-B      
REMARK 210                                   (356-470), 50MM TRIS (PH=7.5),     
REMARK 210                                   17MM NACL, 5MM DTT; 250 MICRO M    
REMARK 210                                   (15N)ARNT PAS-B (356-470) + 1MM    
REMARK 210                                   HIF-2ALPHA PAS-B (240-350), 50MM   
REMARK 210                                   TRIS (PH=7.5), 17MM NACL, 5MM DTT  
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 15N/1H HSQC                        
REMARK 210  SPECTROMETER FIELD STRENGTH    : NULL                               
REMARK 210  SPECTROMETER MODEL             : NULL                               
REMARK 210  SPECTROMETER MANUFACTURER      : NULL                               
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : NMRPIPE 2.3, CNS 1.1, NMRVIEW      
REMARK 210                                   5.2.2                              
REMARK 210   METHOD USED                   : SIMULATED ANNEALING                
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 50                                 
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 20                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : NULL                               
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: 15N/1H HSQC WAS USED TO MONITOR CHEMICAL SHIFT               
REMARK 210  PERTURBATION UPON COMPLEX FORMATION TO IDENTIFY                     
REMARK 210  INTERACTION INTERFACE.                                              
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC                           
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B                                  
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS                                             
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 MET A  14     -102.84     60.51                                   
REMARK 500  1 LEU A  28      -57.26   -123.67                                   
REMARK 500  1 HIS A  46     -173.25     65.65                                   
REMARK 500  1 LEU A  96       72.57     56.55                                   
REMARK 500  1 GLN A  99      -77.09    -89.86                                   
REMARK 500  1 LEU A 108      -65.89   -125.41                                   
REMARK 500  1 GLU A 110     -159.53    -91.38                                   
REMARK 500  1 THR B  32      -64.01    -90.81                                   
REMARK 500  1 LYS B  68       83.70     56.69                                   
REMARK 500  1 TYR B  99      -73.72    -81.02                                   
REMARK 500  1 GLU B 102      129.08   -171.43                                   
REMARK 500  1 VAL B 113      -90.23    -85.74                                   
REMARK 500  2 MET A  14     -102.15     54.68                                   
REMARK 500  2 ASP A  15       32.36    -87.27                                   
REMARK 500  2 PHE A  44       34.17   -148.48                                   
REMARK 500  2 HIS A  46      170.05     70.71                                   
REMARK 500  2 ALA A  47      -64.48    -99.28                                   
REMARK 500  2 LYS A  63      -53.01   -132.17                                   
REMARK 500  2 HIS A  77       30.39   -176.65                                   
REMARK 500  2 LEU A 108      -80.89   -120.92                                   
REMARK 500  2 THR B  10       47.55    -86.33                                   
REMARK 500  2 ARG B  28       19.61   -147.83                                   
REMARK 500  2 LYS B  68      119.42     65.69                                   
REMARK 500  2 TYR B  99      -76.28   -106.06                                   
REMARK 500  3 MET A  14     -102.51     58.73                                   
REMARK 500  3 HIS A  46      149.89     68.80                                   
REMARK 500  3 LYS A  63      -47.52   -140.03                                   
REMARK 500  3 LYS A  76       37.48    -81.76                                   
REMARK 500  3 HIS A  77       27.26   -166.00                                   
REMARK 500  3 GLN A  99      -84.93    -98.91                                   
REMARK 500  3 THR B  10       48.81    -86.99                                   
REMARK 500  3 ARG B  28      -18.16   -148.66                                   
REMARK 500  3 THR B  32      -67.16    -94.44                                   
REMARK 500  3 LYS B  68      125.72     67.57                                   
REMARK 500  3 PRO B  98       39.75    -81.70                                   
REMARK 500  3 TYR B  99      -71.65   -119.52                                   
REMARK 500  4 LEU A  28      -68.63    -91.54                                   
REMARK 500  4 PHE A  44       20.87   -145.02                                   
REMARK 500  4 HIS A  46      121.90     67.00                                   
REMARK 500  4 ASP A  49       49.08    -87.37                                   
REMARK 500  4 ARG B  28       10.55   -151.92                                   
REMARK 500  4 THR B  32      -71.93   -102.84                                   
REMARK 500  4 LYS B  68      101.55     61.06                                   
REMARK 500  4 PRO B  98       47.05    -87.36                                   
REMARK 500  4 TYR B  99      -60.83   -127.17                                   
REMARK 500  5 MET A  14      -98.09     55.98                                   
REMARK 500  5 PHE A  44       29.30   -140.41                                   
REMARK 500  5 HIS A  46      151.87     67.87                                   
REMARK 500  5 GLN A  70      112.35    -36.06                                   
REMARK 500  5 HIS A  77       26.99    178.98                                   
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS     210 RAMACHANDRAN OUTLIERS.                        
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
DBREF  2A24 A    6   112  UNP    Q99814   EPAS1_HUMAN    242    348             
DBREF  2A24 B    7   114  UNP    P27540   ARNT_HUMAN     358    465             
SEQRES   1 A  107  LYS THR PHE LEU SER ARG HIS SER MET ASP MET LYS PHE          
SEQRES   2 A  107  THR TYR CYS ASP ASP ARG ILE THR GLU LEU ILE GLY TYR          
SEQRES   3 A  107  HIS PRO GLU GLU LEU LEU GLY ARG SER ALA TYR GLU PHE          
SEQRES   4 A  107  TYR HIS ALA LEU ASP SER GLU ASN MET THR LYS SER HIS          
SEQRES   5 A  107  GLN ASN LEU CYS THR LYS GLY GLN VAL VAL SER GLY GLN          
SEQRES   6 A  107  TYR ARG MET LEU ALA LYS HIS GLY GLY TYR VAL TRP LEU          
SEQRES   7 A  107  GLU THR GLN GLY THR VAL ILE TYR ASN PRO ARG ASN LEU          
SEQRES   8 A  107  GLN PRO GLN CYS ILE MET CYS VAL ASN TYR VAL LEU SER          
SEQRES   9 A  107  GLU ILE GLU                                                  
SEQRES   1 B  108  CYS GLN PRO THR GLU PHE ILE SER ARG HIS ASN ILE GLU          
SEQRES   2 B  108  GLY ILE PHE THR PHE VAL ASP HIS ARG CYS VAL ALA THR          
SEQRES   3 B  108  VAL GLY TYR GLN PRO GLN GLU LEU LEU GLY LYS ASN ILE          
SEQRES   4 B  108  VAL GLU PHE CYS HIS PRO GLU ASP GLN GLN LEU LEU ARG          
SEQRES   5 B  108  ASP SER PHE GLN GLN VAL VAL LYS LEU LYS GLY GLN VAL          
SEQRES   6 B  108  LEU SER VAL MET PHE ARG PHE ARG SER LYS ASN GLN GLU          
SEQRES   7 B  108  TRP LEU TRP MET ARG THR SER SER PHE THR PHE GLN ASN          
SEQRES   8 B  108  PRO TYR SER ASP GLU ILE GLU TYR ILE ILE CYS THR ASN          
SEQRES   9 B  108  THR ASN VAL LYS                                              
HELIX    1   1 ASP A   23  GLU A   27  5                                   5    
HELIX    2   2 HIS A   32  LEU A   37  1                                   6    
HELIX    3   3 SER A   40  TYR A   45  5                                   6    
HELIX    4   4 ASP A   49  THR A   62  1                                  14    
HELIX    5   5 ARG B   28  VAL B   33  1                                   6    
HELIX    6   6 GLN B   36  LEU B   41  1                                   6    
HELIX    7   7 ASN B   44  CYS B   49  5                                   6    
HELIX    8   8 HIS B   50  GLU B   52  5                                   3    
HELIX    9   9 ASP B   53  LYS B   68  1                                  16    
SHEET    1   A 5 LYS A  17  CYS A  21  0                                        
SHEET    2   A 5 THR A   7  SER A  13 -1  N  ARG A  11   O  TYR A  20           
SHEET    3   A 5 GLN A  97  GLU A 112 -1  O  ILE A 101   N  HIS A  12           
SHEET    4   A 5 TYR A  80  ASN A  92 -1  N  GLU A  84   O  TYR A 106           
SHEET    5   A 5 GLN A  65  LEU A  74 -1  N  SER A  68   O  THR A  85           
SHEET    1   B 4 GLU B  11  PHE B  12  0                                        
SHEET    2   B 4 THR B 109  ASN B 112 -1  O  ASN B 110   N  PHE B  12           
SHEET    3   B 4 TRP B  85  GLN B  96 -1  N  SER B  91   O  THR B 109           
SHEET    4   B 4 VAL B  71  ARG B  79 -1  N  PHE B  76   O  MET B  88           
SHEET    1   C 4 GLU B  11  PHE B  12  0                                        
SHEET    2   C 4 THR B 109  ASN B 112 -1  O  ASN B 110   N  PHE B  12           
SHEET    3   C 4 TRP B  85  GLN B  96 -1  N  SER B  91   O  THR B 109           
SHEET    4   C 4 ILE B 103  ILE B 106 -1  O  TYR B 105   N  PHE B  95           
SHEET    1   D 2 SER B  14  HIS B  16  0                                        
SHEET    2   D 2 PHE B  22  VAL B  25 -1  O  PHE B  24   N  ARG B  15           
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000