PDB Short entry for 2A2Z HEADER TRANSFERASE 23-JUN-05 2A2Z TITLE CRYSTAL STRUCTURE OF HUMAN DEOXYCYTIDINE KINASE IN COMPLEX WITH TITLE 2 DEOXYCYTIDINE AND URIDINE DIPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEOXYCYTIDINE KINASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: DCK; COMPND 5 EC: 2.7.1.74; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DCK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BLD21DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET14B KEYWDS NUCLEOSIDE KINASE, URIDINE DIPHOSPHATE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.H.GODSEY,S.ORT,E.SABINI,M.KONRAD,A.LAVIE REVDAT 3 23-AUG-23 2A2Z 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 2A2Z 1 VERSN REVDAT 1 17-JAN-06 2A2Z 0 JRNL AUTH M.H.GODSEY,S.ORT,E.SABINI,M.KONRAD,A.LAVIE JRNL TITL STRUCTURAL BASIS FOR THE PREFERENCE OF UTP OVER ATP IN HUMAN JRNL TITL 2 DEOXYCYTIDINE KINASE: ILLUMINATING THE ROLE OF MAIN-CHAIN JRNL TITL 3 REORGANIZATION. JRNL REF BIOCHEMISTRY V. 45 452 2006 JRNL REFN ISSN 0006-2960 JRNL PMID 16401075 JRNL DOI 10.1021/BI0518646 REMARK 2 REMARK 2 RESOLUTION. 3.02 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.02 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 22202 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.246 REMARK 3 FREE R VALUE : 0.300 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2244 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.02 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.16 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2394 REMARK 3 BIN R VALUE (WORKING SET) : 0.3720 REMARK 3 BIN FREE R VALUE : 0.3960 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 269 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.024 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7169 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 170 REMARK 3 SOLVENT ATOMS : 67 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -13.77000 REMARK 3 B22 (A**2) : 5.90000 REMARK 3 B33 (A**2) : 7.87000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.40 REMARK 3 ESD FROM SIGMAA (A) : 0.61 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.50 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.67 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.870 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : CNS BULK SOLVENT MODEL USED REMARK 3 KSOL : 0.28 REMARK 3 BSOL : 22.17 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2A2Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUN-05. REMARK 100 THE DEPOSITION ID IS D_1000033425. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-APR-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97626 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(220) REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22297 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.020 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.12500 REMARK 200 R SYM (I) : 0.11800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.6300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.02 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.45400 REMARK 200 R SYM FOR SHELL (I) : 0.41000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.480 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP, DM 4.2 REMARK 200 STARTING MODEL: PDB ENTRY 1P60 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 1000, MPD, CALCIUM CHLORIDE, REMARK 280 SODIUM CACODYLATE, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.09000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.68500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.42500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 77.68500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.09000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.42500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER. THERE ARE TWO DIMERS REMARK 300 PER ASU. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 THR A 3 REMARK 465 PRO A 4 REMARK 465 PRO A 5 REMARK 465 LYS A 6 REMARK 465 ARG A 7 REMARK 465 SER A 8 REMARK 465 CYS A 9 REMARK 465 PRO A 10 REMARK 465 SER A 11 REMARK 465 PHE A 12 REMARK 465 SER A 13 REMARK 465 ALA A 14 REMARK 465 SER A 15 REMARK 465 SER A 16 REMARK 465 GLU A 17 REMARK 465 GLY A 18 REMARK 465 THR A 19 REMARK 465 LEU A 116 REMARK 465 LYS A 117 REMARK 465 ASP A 118 REMARK 465 ALA A 119 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 THR B 3 REMARK 465 PRO B 4 REMARK 465 PRO B 5 REMARK 465 LYS B 6 REMARK 465 ARG B 7 REMARK 465 SER B 8 REMARK 465 CYS B 9 REMARK 465 PRO B 10 REMARK 465 SER B 11 REMARK 465 PHE B 12 REMARK 465 SER B 13 REMARK 465 ALA B 14 REMARK 465 SER B 15 REMARK 465 SER B 16 REMARK 465 GLU B 17 REMARK 465 GLY B 18 REMARK 465 THR B 19 REMARK 465 LYS B 115 REMARK 465 LEU B 116 REMARK 465 LYS B 117 REMARK 465 ASP B 118 REMARK 465 ALA B 119 REMARK 465 GLY C -2 REMARK 465 SER C -1 REMARK 465 HIS C 0 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 THR C 3 REMARK 465 PRO C 4 REMARK 465 PRO C 5 REMARK 465 LYS C 6 REMARK 465 ARG C 7 REMARK 465 SER C 8 REMARK 465 CYS C 9 REMARK 465 PRO C 10 REMARK 465 SER C 11 REMARK 465 PHE C 12 REMARK 465 SER C 13 REMARK 465 ALA C 14 REMARK 465 SER C 15 REMARK 465 SER C 16 REMARK 465 GLU C 17 REMARK 465 GLY C 18 REMARK 465 THR C 19 REMARK 465 LEU C 116 REMARK 465 LYS C 117 REMARK 465 ASP C 118 REMARK 465 ALA C 119 REMARK 465 GLY D -2 REMARK 465 SER D -1 REMARK 465 HIS D 0 REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 465 THR D 3 REMARK 465 PRO D 4 REMARK 465 PRO D 5 REMARK 465 LYS D 6 REMARK 465 ARG D 7 REMARK 465 SER D 8 REMARK 465 CYS D 9 REMARK 465 PRO D 10 REMARK 465 SER D 11 REMARK 465 PHE D 12 REMARK 465 SER D 13 REMARK 465 ALA D 14 REMARK 465 SER D 15 REMARK 465 SER D 16 REMARK 465 GLU D 17 REMARK 465 GLY D 18 REMARK 465 THR D 19 REMARK 465 GLY D 114 REMARK 465 LYS D 115 REMARK 465 LEU D 116 REMARK 465 LYS D 117 REMARK 465 ASP D 118 REMARK 465 ALA D 119 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 20 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 42 CG CD CE NZ REMARK 470 LEU A 44 CG CD1 CD2 REMARK 470 GLU A 46 CG CD OE1 OE2 REMARK 470 ASP A 47 CG OD1 OD2 REMARK 470 GLU A 49 CG CD OE1 OE2 REMARK 470 LYS A 115 CG CD CE NZ REMARK 470 GLU A 120 CG CD OE1 OE2 REMARK 470 LYS A 121 CG CD CE NZ REMARK 470 GLU A 145 CG CD OE1 OE2 REMARK 470 ASN A 164 CG OD1 ND2 REMARK 470 PHE A 166 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 222 CG CD CE NZ REMARK 470 ASP A 226 CG OD1 OD2 REMARK 470 LYS A 243 CG CD CE NZ REMARK 470 ASP A 244 CG OD1 OD2 REMARK 470 LYS A 245 CG CD CE NZ REMARK 470 GLU A 251 CG CD OE1 OE2 REMARK 470 ARG B 20 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 44 CG CD1 CD2 REMARK 470 GLU B 46 CG CD OE1 OE2 REMARK 470 GLU B 49 CG CD OE1 OE2 REMARK 470 ARG B 57 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 60 CG OD1 ND2 REMARK 470 GLU B 120 CG CD OE1 OE2 REMARK 470 LYS B 121 CG CD CE NZ REMARK 470 ASN B 164 CG OD1 ND2 REMARK 470 PHE B 166 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 222 CG CD CE NZ REMARK 470 GLN B 229 CG CD OE1 NE2 REMARK 470 GLU B 230 CG CD OE1 OE2 REMARK 470 LYS B 245 CG CD CE NZ REMARK 470 GLU B 247 CG CD OE1 OE2 REMARK 470 ARG C 20 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 42 CG CD CE NZ REMARK 470 LEU C 44 CG CD1 CD2 REMARK 470 GLU C 46 CG CD OE1 OE2 REMARK 470 ASP C 47 CG OD1 OD2 REMARK 470 LYS C 115 CG CD CE NZ REMARK 470 GLU C 120 CG CD OE1 OE2 REMARK 470 LYS C 121 CG CD CE NZ REMARK 470 ASN C 164 CG OD1 ND2 REMARK 470 PHE C 166 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS C 222 CG CD CE NZ REMARK 470 ASP C 226 CG OD1 OD2 REMARK 470 LYS C 243 CG CD CE NZ REMARK 470 ASP C 244 CG OD1 OD2 REMARK 470 LYS C 245 CG CD CE NZ REMARK 470 GLU C 247 CG CD OE1 OE2 REMARK 470 GLU C 251 CG CD OE1 OE2 REMARK 470 ARG D 20 CG CD NE CZ NH1 NH2 REMARK 470 LEU D 44 CG CD1 CD2 REMARK 470 GLU D 46 CG CD OE1 OE2 REMARK 470 ASP D 47 CG OD1 OD2 REMARK 470 GLU D 49 CG CD OE1 OE2 REMARK 470 ARG D 57 CG CD NE CZ NH1 NH2 REMARK 470 ASN D 60 CG OD1 ND2 REMARK 470 GLU D 120 CG CD OE1 OE2 REMARK 470 LYS D 121 CG CD CE NZ REMARK 470 ASN D 164 CG OD1 ND2 REMARK 470 PHE D 166 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS D 222 CG CD CE NZ REMARK 470 ASP D 226 CG OD1 OD2 REMARK 470 GLN D 229 CG CD OE1 NE2 REMARK 470 LYS D 243 CG CD CE NZ REMARK 470 ASP D 244 CG OD1 OD2 REMARK 470 LYS D 245 CG CD CE NZ REMARK 470 GLU D 247 CG CD OE1 OE2 REMARK 470 GLU D 251 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG C 219 O VAL C 231 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO D 122 C - N - CA ANGL. DEV. = 10.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 44 -8.07 -57.39 REMARK 500 CYS A 45 124.60 -179.77 REMARK 500 PRO A 54 41.51 -66.75 REMARK 500 LYS A 88 69.43 -152.95 REMARK 500 ALA A 110 -76.36 -52.43 REMARK 500 LEU A 112 24.66 -65.17 REMARK 500 LYS A 121 68.66 -115.21 REMARK 500 ARG A 128 178.44 60.45 REMARK 500 GLN A 165 -109.62 -82.42 REMARK 500 THR A 223 -157.98 -123.08 REMARK 500 ASP A 244 32.75 -140.26 REMARK 500 LYS A 245 60.93 -159.50 REMARK 500 THR A 259 35.23 -86.34 REMARK 500 GLN B 43 65.22 -116.92 REMARK 500 LEU B 44 18.00 -161.74 REMARK 500 CYS B 45 112.05 165.24 REMARK 500 GLU B 46 10.97 -63.01 REMARK 500 PRO B 54 61.05 -66.57 REMARK 500 LYS B 88 71.18 -158.11 REMARK 500 ALA B 110 -81.66 -54.17 REMARK 500 ARG B 128 177.75 61.44 REMARK 500 GLN B 165 -111.49 -76.72 REMARK 500 GLN B 168 -11.40 -46.82 REMARK 500 ARG B 219 68.93 37.02 REMARK 500 THR B 223 -158.33 -123.00 REMARK 500 GLN B 229 71.57 -67.97 REMARK 500 GLU B 230 0.45 177.76 REMARK 500 ASP B 244 31.73 -140.21 REMARK 500 LYS B 245 61.25 -159.86 REMARK 500 THR B 259 36.13 -86.31 REMARK 500 LYS C 42 30.83 -65.80 REMARK 500 GLN C 43 -39.79 -148.46 REMARK 500 LEU C 44 16.65 -68.82 REMARK 500 CYS C 45 126.21 172.96 REMARK 500 PRO C 54 42.35 -71.33 REMARK 500 LYS C 88 68.50 -155.34 REMARK 500 LEU C 112 26.70 -67.04 REMARK 500 ARG C 128 179.24 59.34 REMARK 500 GLN C 165 -91.85 -77.70 REMARK 500 ARG C 219 50.66 70.97 REMARK 500 THR C 223 -160.13 -124.23 REMARK 500 PHE C 225 77.59 -108.41 REMARK 500 LYS C 245 59.73 -160.76 REMARK 500 THR C 259 38.46 -84.97 REMARK 500 GLN D 43 57.42 -91.02 REMARK 500 LEU D 44 34.96 -160.06 REMARK 500 CYS D 45 126.30 149.24 REMARK 500 PRO D 54 68.55 -67.08 REMARK 500 LYS D 88 68.46 -156.35 REMARK 500 ALA D 110 -79.42 -55.72 REMARK 500 REMARK 500 THIS ENTRY HAS 59 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 UDP 301, MO3 302, DCZ 304 ARE ASSOICATED WITH PROTEIN CHAIN A REMARK 600 UDP 401, MO3 402, DCZ 404 ARE ASSOICATED WITH PROTEIN CHAIN B REMARK 600 UDP 501, MO3 502, DCZ 504 ARE ASSOICATED WITH PROTEIN CHAIN C REMARK 600 UDP 601, MO3 602, DCZ 604 ARE ASSOICATED WITH PROTEIN CHAIN D REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 35 OG REMARK 620 2 GLU A 127 OE1 64.7 REMARK 620 3 UDP A 301 O1B 62.5 78.1 REMARK 620 4 UDP A 301 O2B 113.5 109.7 52.3 REMARK 620 5 HOH A 305 O 65.0 129.1 85.5 96.5 REMARK 620 6 HOH A 306 O 77.7 74.1 138.4 168.8 88.5 REMARK 620 7 HOH A 307 O 161.8 131.5 123.9 71.7 97.6 97.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 261 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 60 ND2 REMARK 620 2 GLU C 230 O 67.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 261 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 230 O REMARK 620 2 ASN C 60 OD1 81.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 35 OG REMARK 620 2 GLU B 127 OE1 58.1 REMARK 620 3 UDP B 401 O1B 63.3 84.9 REMARK 620 4 HOH B 405 O 99.2 74.4 158.3 REMARK 620 5 HOH B 406 O 127.2 74.2 93.1 87.7 REMARK 620 6 HOH B 407 O 133.9 167.9 102.3 99.2 95.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER C 35 OG REMARK 620 2 GLU C 127 OE1 74.5 REMARK 620 3 UDP C 501 O1B 67.2 86.9 REMARK 620 4 HOH C 505 O 77.7 149.2 94.4 REMARK 620 5 HOH C 506 O 70.2 70.5 135.8 87.9 REMARK 620 6 HOH C 507 O 167.0 105.7 125.7 98.4 97.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER D 35 OG REMARK 620 2 GLU D 127 OE1 61.8 REMARK 620 3 UDP D 601 O1B 56.4 71.7 REMARK 620 4 HOH D 605 O 89.7 63.3 133.1 REMARK 620 5 HOH D 606 O 118.9 63.4 82.6 88.7 REMARK 620 6 HOH D 607 O 143.9 150.9 129.5 97.2 96.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 261 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 261 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG D 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCZ A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UDP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCZ B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UDP B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCZ C 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UDP C 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCZ D 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UDP D 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2A30 RELATED DB: PDB DBREF 2A2Z A 4 260 UNP P27707 DCK_HUMAN 1 260 DBREF 2A2Z B 4 260 UNP P27707 DCK_HUMAN 1 260 DBREF 2A2Z C 4 260 UNP P27707 DCK_HUMAN 1 260 DBREF 2A2Z D 4 260 UNP P27707 DCK_HUMAN 1 260 SEQADV 2A2Z GLY A -2 UNP P27707 CLONING ARTIFACT SEQADV 2A2Z SER A -1 UNP P27707 CLONING ARTIFACT SEQADV 2A2Z HIS A 0 UNP P27707 CLONING ARTIFACT SEQADV 2A2Z A UNP P27707 GLN 65 DELETION SEQADV 2A2Z A UNP P27707 ASP 66 DELETION SEQADV 2A2Z A UNP P27707 GLU 67 DELETION SEQADV 2A2Z A UNP P27707 PHE 68 DELETION SEQADV 2A2Z A UNP P27707 GLU 69 DELETION SEQADV 2A2Z A UNP P27707 GLU 70 DELETION SEQADV 2A2Z A UNP P27707 LEU 71 DELETION SEQADV 2A2Z A UNP P27707 THR 72 DELETION SEQADV 2A2Z A UNP P27707 MET 73 DELETION SEQADV 2A2Z A UNP P27707 SER 74 DELETION SEQADV 2A2Z A UNP P27707 GLN 75 DELETION SEQADV 2A2Z A UNP P27707 LYS 76 DELETION SEQADV 2A2Z A UNP P27707 ASN 77 DELETION SEQADV 2A2Z A UNP P27707 GLY 78 DELETION SEQADV 2A2Z A UNP P27707 GLY 79 DELETION SEQADV 2A2Z GLY B -2 UNP P27707 CLONING ARTIFACT SEQADV 2A2Z SER B -1 UNP P27707 CLONING ARTIFACT SEQADV 2A2Z HIS B 0 UNP P27707 CLONING ARTIFACT SEQADV 2A2Z B UNP P27707 GLN 65 DELETION SEQADV 2A2Z B UNP P27707 ASP 66 DELETION SEQADV 2A2Z B UNP P27707 GLU 67 DELETION SEQADV 2A2Z B UNP P27707 PHE 68 DELETION SEQADV 2A2Z B UNP P27707 GLU 69 DELETION SEQADV 2A2Z B UNP P27707 GLU 70 DELETION SEQADV 2A2Z B UNP P27707 LEU 71 DELETION SEQADV 2A2Z B UNP P27707 THR 72 DELETION SEQADV 2A2Z B UNP P27707 MET 73 DELETION SEQADV 2A2Z B UNP P27707 SER 74 DELETION SEQADV 2A2Z B UNP P27707 GLN 75 DELETION SEQADV 2A2Z B UNP P27707 LYS 76 DELETION SEQADV 2A2Z B UNP P27707 ASN 77 DELETION SEQADV 2A2Z B UNP P27707 GLY 78 DELETION SEQADV 2A2Z B UNP P27707 GLY 79 DELETION SEQADV 2A2Z GLY C -2 UNP P27707 CLONING ARTIFACT SEQADV 2A2Z SER C -1 UNP P27707 CLONING ARTIFACT SEQADV 2A2Z HIS C 0 UNP P27707 CLONING ARTIFACT SEQADV 2A2Z C UNP P27707 GLN 65 DELETION SEQADV 2A2Z C UNP P27707 ASP 66 DELETION SEQADV 2A2Z C UNP P27707 GLU 67 DELETION SEQADV 2A2Z C UNP P27707 PHE 68 DELETION SEQADV 2A2Z C UNP P27707 GLU 69 DELETION SEQADV 2A2Z C UNP P27707 GLU 70 DELETION SEQADV 2A2Z C UNP P27707 LEU 71 DELETION SEQADV 2A2Z C UNP P27707 THR 72 DELETION SEQADV 2A2Z C UNP P27707 MET 73 DELETION SEQADV 2A2Z C UNP P27707 SER 74 DELETION SEQADV 2A2Z C UNP P27707 GLN 75 DELETION SEQADV 2A2Z C UNP P27707 LYS 76 DELETION SEQADV 2A2Z C UNP P27707 ASN 77 DELETION SEQADV 2A2Z C UNP P27707 GLY 78 DELETION SEQADV 2A2Z C UNP P27707 GLY 79 DELETION SEQADV 2A2Z GLY D -2 UNP P27707 CLONING ARTIFACT SEQADV 2A2Z SER D -1 UNP P27707 CLONING ARTIFACT SEQADV 2A2Z HIS D 0 UNP P27707 CLONING ARTIFACT SEQADV 2A2Z D UNP P27707 GLN 65 DELETION SEQADV 2A2Z D UNP P27707 ASP 66 DELETION SEQADV 2A2Z D UNP P27707 GLU 67 DELETION SEQADV 2A2Z D UNP P27707 PHE 68 DELETION SEQADV 2A2Z D UNP P27707 GLU 69 DELETION SEQADV 2A2Z D UNP P27707 GLU 70 DELETION SEQADV 2A2Z D UNP P27707 LEU 71 DELETION SEQADV 2A2Z D UNP P27707 THR 72 DELETION SEQADV 2A2Z D UNP P27707 MET 73 DELETION SEQADV 2A2Z D UNP P27707 SER 74 DELETION SEQADV 2A2Z D UNP P27707 GLN 75 DELETION SEQADV 2A2Z D UNP P27707 LYS 76 DELETION SEQADV 2A2Z D UNP P27707 ASN 77 DELETION SEQADV 2A2Z D UNP P27707 GLY 78 DELETION SEQADV 2A2Z D UNP P27707 GLY 79 DELETION SEQRES 1 A 248 GLY SER HIS MET ALA THR PRO PRO LYS ARG SER CYS PRO SEQRES 2 A 248 SER PHE SER ALA SER SER GLU GLY THR ARG ILE LYS LYS SEQRES 3 A 248 ILE SER ILE GLU GLY ASN ILE ALA ALA GLY LYS SER THR SEQRES 4 A 248 PHE VAL ASN ILE LEU LYS GLN LEU CYS GLU ASP TRP GLU SEQRES 5 A 248 VAL VAL PRO GLU PRO VAL ALA ARG TRP CYS ASN VAL GLN SEQRES 6 A 248 SER THR ASN VAL LEU GLN MET MET TYR GLU LYS PRO GLU SEQRES 7 A 248 ARG TRP SER PHE THR PHE GLN THR TYR ALA CYS LEU SER SEQRES 8 A 248 ARG ILE ARG ALA GLN LEU ALA SER LEU ASN GLY LYS LEU SEQRES 9 A 248 LYS ASP ALA GLU LYS PRO VAL LEU PHE PHE GLU ARG SER SEQRES 10 A 248 VAL TYR SER ASP ARG TYR ILE PHE ALA SER ASN LEU TYR SEQRES 11 A 248 GLU SER GLU CYS MET ASN GLU THR GLU TRP THR ILE TYR SEQRES 12 A 248 GLN ASP TRP HIS ASP TRP MET ASN ASN GLN PHE GLY GLN SEQRES 13 A 248 SER LEU GLU LEU ASP GLY ILE ILE TYR LEU GLN ALA THR SEQRES 14 A 248 PRO GLU THR CYS LEU HIS ARG ILE TYR LEU ARG GLY ARG SEQRES 15 A 248 ASN GLU GLU GLN GLY ILE PRO LEU GLU TYR LEU GLU LYS SEQRES 16 A 248 LEU HIS TYR LYS HIS GLU SER TRP LEU LEU HIS ARG THR SEQRES 17 A 248 LEU LYS THR ASN PHE ASP TYR LEU GLN GLU VAL PRO ILE SEQRES 18 A 248 LEU THR LEU ASP VAL ASN GLU ASP PHE LYS ASP LYS TYR SEQRES 19 A 248 GLU SER LEU VAL GLU LYS VAL LYS GLU PHE LEU SER THR SEQRES 20 A 248 LEU SEQRES 1 B 248 GLY SER HIS MET ALA THR PRO PRO LYS ARG SER CYS PRO SEQRES 2 B 248 SER PHE SER ALA SER SER GLU GLY THR ARG ILE LYS LYS SEQRES 3 B 248 ILE SER ILE GLU GLY ASN ILE ALA ALA GLY LYS SER THR SEQRES 4 B 248 PHE VAL ASN ILE LEU LYS GLN LEU CYS GLU ASP TRP GLU SEQRES 5 B 248 VAL VAL PRO GLU PRO VAL ALA ARG TRP CYS ASN VAL GLN SEQRES 6 B 248 SER THR ASN VAL LEU GLN MET MET TYR GLU LYS PRO GLU SEQRES 7 B 248 ARG TRP SER PHE THR PHE GLN THR TYR ALA CYS LEU SER SEQRES 8 B 248 ARG ILE ARG ALA GLN LEU ALA SER LEU ASN GLY LYS LEU SEQRES 9 B 248 LYS ASP ALA GLU LYS PRO VAL LEU PHE PHE GLU ARG SER SEQRES 10 B 248 VAL TYR SER ASP ARG TYR ILE PHE ALA SER ASN LEU TYR SEQRES 11 B 248 GLU SER GLU CYS MET ASN GLU THR GLU TRP THR ILE TYR SEQRES 12 B 248 GLN ASP TRP HIS ASP TRP MET ASN ASN GLN PHE GLY GLN SEQRES 13 B 248 SER LEU GLU LEU ASP GLY ILE ILE TYR LEU GLN ALA THR SEQRES 14 B 248 PRO GLU THR CYS LEU HIS ARG ILE TYR LEU ARG GLY ARG SEQRES 15 B 248 ASN GLU GLU GLN GLY ILE PRO LEU GLU TYR LEU GLU LYS SEQRES 16 B 248 LEU HIS TYR LYS HIS GLU SER TRP LEU LEU HIS ARG THR SEQRES 17 B 248 LEU LYS THR ASN PHE ASP TYR LEU GLN GLU VAL PRO ILE SEQRES 18 B 248 LEU THR LEU ASP VAL ASN GLU ASP PHE LYS ASP LYS TYR SEQRES 19 B 248 GLU SER LEU VAL GLU LYS VAL LYS GLU PHE LEU SER THR SEQRES 20 B 248 LEU SEQRES 1 C 248 GLY SER HIS MET ALA THR PRO PRO LYS ARG SER CYS PRO SEQRES 2 C 248 SER PHE SER ALA SER SER GLU GLY THR ARG ILE LYS LYS SEQRES 3 C 248 ILE SER ILE GLU GLY ASN ILE ALA ALA GLY LYS SER THR SEQRES 4 C 248 PHE VAL ASN ILE LEU LYS GLN LEU CYS GLU ASP TRP GLU SEQRES 5 C 248 VAL VAL PRO GLU PRO VAL ALA ARG TRP CYS ASN VAL GLN SEQRES 6 C 248 SER THR ASN VAL LEU GLN MET MET TYR GLU LYS PRO GLU SEQRES 7 C 248 ARG TRP SER PHE THR PHE GLN THR TYR ALA CYS LEU SER SEQRES 8 C 248 ARG ILE ARG ALA GLN LEU ALA SER LEU ASN GLY LYS LEU SEQRES 9 C 248 LYS ASP ALA GLU LYS PRO VAL LEU PHE PHE GLU ARG SER SEQRES 10 C 248 VAL TYR SER ASP ARG TYR ILE PHE ALA SER ASN LEU TYR SEQRES 11 C 248 GLU SER GLU CYS MET ASN GLU THR GLU TRP THR ILE TYR SEQRES 12 C 248 GLN ASP TRP HIS ASP TRP MET ASN ASN GLN PHE GLY GLN SEQRES 13 C 248 SER LEU GLU LEU ASP GLY ILE ILE TYR LEU GLN ALA THR SEQRES 14 C 248 PRO GLU THR CYS LEU HIS ARG ILE TYR LEU ARG GLY ARG SEQRES 15 C 248 ASN GLU GLU GLN GLY ILE PRO LEU GLU TYR LEU GLU LYS SEQRES 16 C 248 LEU HIS TYR LYS HIS GLU SER TRP LEU LEU HIS ARG THR SEQRES 17 C 248 LEU LYS THR ASN PHE ASP TYR LEU GLN GLU VAL PRO ILE SEQRES 18 C 248 LEU THR LEU ASP VAL ASN GLU ASP PHE LYS ASP LYS TYR SEQRES 19 C 248 GLU SER LEU VAL GLU LYS VAL LYS GLU PHE LEU SER THR SEQRES 20 C 248 LEU SEQRES 1 D 248 GLY SER HIS MET ALA THR PRO PRO LYS ARG SER CYS PRO SEQRES 2 D 248 SER PHE SER ALA SER SER GLU GLY THR ARG ILE LYS LYS SEQRES 3 D 248 ILE SER ILE GLU GLY ASN ILE ALA ALA GLY LYS SER THR SEQRES 4 D 248 PHE VAL ASN ILE LEU LYS GLN LEU CYS GLU ASP TRP GLU SEQRES 5 D 248 VAL VAL PRO GLU PRO VAL ALA ARG TRP CYS ASN VAL GLN SEQRES 6 D 248 SER THR ASN VAL LEU GLN MET MET TYR GLU LYS PRO GLU SEQRES 7 D 248 ARG TRP SER PHE THR PHE GLN THR TYR ALA CYS LEU SER SEQRES 8 D 248 ARG ILE ARG ALA GLN LEU ALA SER LEU ASN GLY LYS LEU SEQRES 9 D 248 LYS ASP ALA GLU LYS PRO VAL LEU PHE PHE GLU ARG SER SEQRES 10 D 248 VAL TYR SER ASP ARG TYR ILE PHE ALA SER ASN LEU TYR SEQRES 11 D 248 GLU SER GLU CYS MET ASN GLU THR GLU TRP THR ILE TYR SEQRES 12 D 248 GLN ASP TRP HIS ASP TRP MET ASN ASN GLN PHE GLY GLN SEQRES 13 D 248 SER LEU GLU LEU ASP GLY ILE ILE TYR LEU GLN ALA THR SEQRES 14 D 248 PRO GLU THR CYS LEU HIS ARG ILE TYR LEU ARG GLY ARG SEQRES 15 D 248 ASN GLU GLU GLN GLY ILE PRO LEU GLU TYR LEU GLU LYS SEQRES 16 D 248 LEU HIS TYR LYS HIS GLU SER TRP LEU LEU HIS ARG THR SEQRES 17 D 248 LEU LYS THR ASN PHE ASP TYR LEU GLN GLU VAL PRO ILE SEQRES 18 D 248 LEU THR LEU ASP VAL ASN GLU ASP PHE LYS ASP LYS TYR SEQRES 19 D 248 GLU SER LEU VAL GLU LYS VAL LYS GLU PHE LEU SER THR SEQRES 20 D 248 LEU HET CA A 261 1 HET MG A 302 1 HET DCZ A 304 16 HET UDP A 301 25 HET MG B 402 1 HET DCZ B 404 16 HET UDP B 401 25 HET CA C 261 1 HET MG C 502 1 HET DCZ C 504 16 HET UDP C 501 25 HET MG D 602 1 HET DCZ D 604 16 HET UDP D 601 25 HETNAM CA CALCIUM ION HETNAM MG MAGNESIUM ION HETNAM DCZ 2'-DEOXYCYTIDINE HETNAM UDP URIDINE-5'-DIPHOSPHATE FORMUL 5 CA 2(CA 2+) FORMUL 6 MG 4(MG 2+) FORMUL 7 DCZ 4(C9 H13 N3 O4) FORMUL 8 UDP 4(C9 H14 N2 O12 P2) FORMUL 19 HOH *67(H2 O) HELIX 1 1 GLY A 33 GLN A 43 1 11 HELIX 2 2 PRO A 54 CYS A 59 1 6 HELIX 3 3 ASN A 80 LYS A 88 1 9 HELIX 4 4 LYS A 88 LEU A 112 1 25 HELIX 5 5 SER A 129 ILE A 136 1 8 HELIX 6 6 ILE A 136 SER A 144 1 9 HELIX 7 7 ASN A 148 GLN A 165 1 18 HELIX 8 8 GLY A 167 GLU A 171 5 5 HELIX 9 9 THR A 181 GLY A 193 1 13 HELIX 10 10 PRO A 201 LEU A 217 1 17 HELIX 11 11 PHE A 225 VAL A 231 5 7 HELIX 12 12 TYR A 246 THR A 259 1 14 HELIX 13 13 GLY B 33 GLN B 43 1 11 HELIX 14 14 PRO B 54 ASN B 60 1 7 HELIX 15 15 ASN B 80 LYS B 88 1 9 HELIX 16 16 LYS B 88 ASN B 113 1 26 HELIX 17 17 SER B 129 ILE B 136 1 8 HELIX 18 18 ILE B 136 SER B 144 1 9 HELIX 19 19 ASN B 148 GLN B 165 1 18 HELIX 20 20 THR B 181 GLY B 193 1 13 HELIX 21 21 PRO B 201 LEU B 217 1 17 HELIX 22 22 TYR B 246 THR B 259 1 14 HELIX 23 23 GLY C 33 LYS C 42 1 10 HELIX 24 24 PRO C 54 CYS C 59 1 6 HELIX 25 25 ASN C 80 LYS C 88 1 9 HELIX 26 26 LYS C 88 LEU C 112 1 25 HELIX 27 27 SER C 129 ILE C 136 1 8 HELIX 28 28 ILE C 136 SER C 144 1 9 HELIX 29 29 ASN C 148 GLY C 167 1 20 HELIX 30 30 THR C 181 GLY C 193 1 13 HELIX 31 31 PRO C 201 LEU C 217 1 17 HELIX 32 32 PHE C 225 GLU C 230 5 6 HELIX 33 33 TYR C 246 THR C 259 1 14 HELIX 34 34 GLY D 33 GLN D 43 1 11 HELIX 35 35 VAL D 55 ASN D 60 1 6 HELIX 36 36 ASN D 80 LYS D 88 1 9 HELIX 37 37 LYS D 88 ASN D 113 1 26 HELIX 38 38 SER D 129 ILE D 136 1 8 HELIX 39 39 ILE D 136 SER D 144 1 9 HELIX 40 40 ASN D 148 GLN D 165 1 18 HELIX 41 41 PHE D 166 SER D 169 5 4 HELIX 42 42 THR D 181 GLY D 193 1 13 HELIX 43 43 PRO D 201 LEU D 217 1 17 HELIX 44 44 TYR D 246 THR D 259 1 14 SHEET 1 A 5 TRP A 48 VAL A 51 0 SHEET 2 A 5 VAL A 123 GLU A 127 1 O PHE A 125 N VAL A 51 SHEET 3 A 5 LYS A 22 GLU A 27 1 N ILE A 26 O PHE A 126 SHEET 4 A 5 GLY A 174 GLN A 179 1 O ILE A 176 N SER A 25 SHEET 5 A 5 ILE A 233 ASP A 237 1 O LEU A 234 N TYR A 177 SHEET 1 B 5 TRP B 48 VAL B 51 0 SHEET 2 B 5 VAL B 123 GLU B 127 1 O PHE B 125 N VAL B 51 SHEET 3 B 5 LYS B 22 GLU B 27 1 N ILE B 26 O PHE B 126 SHEET 4 B 5 GLY B 174 GLN B 179 1 O ILE B 176 N SER B 25 SHEET 5 B 5 ILE B 233 ASP B 237 1 O LEU B 234 N TYR B 177 SHEET 1 C 5 TRP C 48 VAL C 51 0 SHEET 2 C 5 VAL C 123 GLU C 127 1 O PHE C 125 N VAL C 51 SHEET 3 C 5 LYS C 22 GLU C 27 1 N ILE C 26 O PHE C 126 SHEET 4 C 5 GLY C 174 GLN C 179 1 O ILE C 176 N SER C 25 SHEET 5 C 5 ILE C 233 ASP C 237 1 O LEU C 234 N TYR C 177 SHEET 1 D 5 TRP D 48 VAL D 51 0 SHEET 2 D 5 VAL D 123 GLU D 127 1 O PHE D 125 N VAL D 51 SHEET 3 D 5 LYS D 22 GLU D 27 1 N ILE D 26 O PHE D 126 SHEET 4 D 5 GLY D 174 GLN D 179 1 O ILE D 176 N SER D 25 SHEET 5 D 5 ILE D 233 ASP D 237 1 O LEU D 234 N TYR D 177 LINK OG SER A 35 MG MG A 302 1555 1555 2.74 LINK ND2 ASN A 60 CA CA A 261 1555 1555 2.69 LINK OE1 GLU A 127 MG MG A 302 1555 1555 2.39 LINK O GLU A 230 CA CA C 261 4466 1555 3.06 LINK CA CA A 261 O GLU C 230 1555 4466 2.75 LINK O1B UDP A 301 MG MG A 302 1555 1555 2.57 LINK O2B UDP A 301 MG MG A 302 1555 1555 3.13 LINK MG MG A 302 O HOH A 305 1555 1555 2.11 LINK MG MG A 302 O HOH A 306 1555 1555 2.11 LINK MG MG A 302 O HOH A 307 1555 1555 2.05 LINK OG SER B 35 MG MG B 402 1555 1555 2.50 LINK OE1 GLU B 127 MG MG B 402 1555 1555 2.50 LINK O1B UDP B 401 MG MG B 402 1555 1555 2.48 LINK MG MG B 402 O HOH B 405 1555 1555 2.11 LINK MG MG B 402 O HOH B 406 1555 1555 2.10 LINK MG MG B 402 O HOH B 407 1555 1555 2.05 LINK OG SER C 35 MG MG C 502 1555 1555 2.43 LINK OD1 ASN C 60 CA CA C 261 1555 1555 2.55 LINK OE1 GLU C 127 MG MG C 502 1555 1555 2.36 LINK O1B UDP C 501 MG MG C 502 1555 1555 2.48 LINK MG MG C 502 O HOH C 505 1555 1555 2.09 LINK MG MG C 502 O HOH C 506 1555 1555 2.10 LINK MG MG C 502 O HOH C 507 1555 1555 2.06 LINK OG SER D 35 MG MG D 602 1555 1555 2.61 LINK OE1 GLU D 127 MG MG D 602 1555 1555 2.71 LINK O1B UDP D 601 MG MG D 602 1555 1555 2.60 LINK MG MG D 602 O HOH D 605 1555 1555 2.11 LINK MG MG D 602 O HOH D 606 1555 1555 2.10 LINK MG MG D 602 O HOH D 607 1555 1555 2.06 SITE 1 AC1 2 ASN A 60 GLU C 230 SITE 1 AC2 2 GLU A 230 ASN C 60 SITE 1 AC3 6 SER A 35 GLU A 127 UDP A 301 HOH A 305 SITE 2 AC3 6 HOH A 306 HOH A 307 SITE 1 AC4 6 SER B 35 GLU B 127 UDP B 401 HOH B 405 SITE 2 AC4 6 HOH B 406 HOH B 407 SITE 1 AC5 6 SER C 35 GLU C 127 UDP C 501 HOH C 505 SITE 2 AC5 6 HOH C 506 HOH C 507 SITE 1 AC6 6 SER D 35 GLU D 127 UDP D 601 HOH D 605 SITE 2 AC6 6 HOH D 606 HOH D 607 SITE 1 AC7 13 GLU A 53 TRP A 58 LEU A 82 MET A 85 SITE 2 AC7 13 TYR A 86 PHE A 96 GLN A 97 ARG A 128 SITE 3 AC7 13 ASP A 133 PHE A 137 GLU A 197 HOH A 312 SITE 4 AC7 13 HOH A 319 SITE 1 AC8 14 ALA A 31 ALA A 32 GLY A 33 LYS A 34 SITE 2 AC8 14 SER A 35 THR A 36 GLU A 127 ARG A 188 SITE 3 AC8 14 ARG A 192 ASP A 241 PHE A 242 LYS A 243 SITE 4 AC8 14 MG A 302 HOH A 312 SITE 1 AC9 14 ILE B 30 GLU B 53 TRP B 58 LEU B 82 SITE 2 AC9 14 MET B 85 TYR B 86 PHE B 96 GLN B 97 SITE 3 AC9 14 ARG B 128 ASP B 133 PHE B 137 ARG B 194 SITE 4 AC9 14 GLU B 197 HOH B 410 SITE 1 BC1 14 ALA B 31 GLY B 33 LYS B 34 SER B 35 SITE 2 BC1 14 THR B 36 GLU B 127 ARG B 188 LEU B 191 SITE 3 BC1 14 ARG B 192 ASP B 241 PHE B 242 LYS B 243 SITE 4 BC1 14 MG B 402 HOH B 410 SITE 1 BC2 11 ILE C 30 GLU C 53 TYR C 86 PHE C 96 SITE 2 BC2 11 GLN C 97 ARG C 128 ASP C 133 PHE C 137 SITE 3 BC2 11 GLU C 197 HOH C 507 HOH C 510 SITE 1 BC3 16 ALA C 31 ALA C 32 GLY C 33 LYS C 34 SITE 2 BC3 16 SER C 35 THR C 36 GLU C 127 ARG C 188 SITE 3 BC3 16 LEU C 191 ARG C 192 ASP C 241 PHE C 242 SITE 4 BC3 16 LYS C 243 MG C 502 HOH C 514 HOH C 519 SITE 1 BC4 12 ILE D 30 GLU D 53 TRP D 58 TYR D 86 SITE 2 BC4 12 PHE D 96 GLN D 97 ARG D 128 ASP D 133 SITE 3 BC4 12 PHE D 137 ARG D 194 GLU D 197 HOH D 609 SITE 1 BC5 15 ALA D 31 ALA D 32 GLY D 33 LYS D 34 SITE 2 BC5 15 SER D 35 THR D 36 GLU D 127 ARG D 188 SITE 3 BC5 15 LEU D 191 ARG D 192 ASP D 241 PHE D 242 SITE 4 BC5 15 LYS D 243 MG D 602 HOH D 609 CRYST1 64.180 110.850 155.370 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015581 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009021 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006436 0.00000