PDB Short entry for 2A41 HEADER STRUCTURAL PROTEIN 27-JUN-05 2A41 TITLE TERNARY COMPLEX OF THE WH2 DOMAIN OF WIP WITH ACTIN-DNASE I COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACTIN, ALPHA SKELETAL MUSCLE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ALPHA-ACTIN 1; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DEOXYRIBONUCLEASE-1; COMPND 7 CHAIN: B; COMPND 8 SYNONYM: DEOXYRIBONUCLEASE I, DNASE I; COMPND 9 EC: 3.1.21.1; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: WISKOTT-ALDRICH SYNDROME PROTEIN INTERACTING PROTEIN; COMPND 12 CHAIN: C; COMPND 13 FRAGMENT: FIRST WH2 DOMAIN; COMPND 14 SYNONYM: WASP INTERACTING PROTEIN, PRPL-2 PROTEIN, WIP; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 3 ORGANISM_COMMON: RABBIT; SOURCE 4 ORGANISM_TAXID: 9986; SOURCE 5 OTHER_DETAILS: SKELETAL MUSCLE; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 8 ORGANISM_COMMON: CATTLE; SOURCE 9 ORGANISM_TAXID: 9913; SOURCE 10 OTHER_DETAILS: PANCREAS; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: SYNTHETIC PEPTIDE KEYWDS WIP, WH2, WASP, ACTIN, DNASE I, ARP2/3, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.CHEREAU,F.KERFF,R.DOMINGUEZ REVDAT 6 23-AUG-23 2A41 1 HETSYN REVDAT 5 29-JUL-20 2A41 1 COMPND REMARK SEQADV HETNAM REVDAT 5 2 1 LINK SITE ATOM REVDAT 4 13-JUL-11 2A41 1 VERSN REVDAT 3 24-FEB-09 2A41 1 VERSN REVDAT 2 22-NOV-05 2A41 1 JRNL REVDAT 1 01-NOV-05 2A41 0 JRNL AUTH D.CHEREAU,F.KERFF,P.GRACEFFA,Z.GRABAREK,K.LANGSETMO, JRNL AUTH 2 R.DOMINGUEZ JRNL TITL ACTIN-BOUND STRUCTURES OF WISKOTT-ALDRICH SYNDROME PROTEIN JRNL TITL 2 (WASP)-HOMOLOGY DOMAIN 2 AND THE IMPLICATIONS FOR FILAMENT JRNL TITL 3 ASSEMBLY JRNL REF PROC.NATL.ACAD.SCI.USA V. 102 16644 2005 JRNL REFN ISSN 0027-8424 JRNL PMID 16275905 JRNL DOI 10.1073/PNAS.0507021102 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.08 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.8 REMARK 3 NUMBER OF REFLECTIONS : 20180 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1087 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1181 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 75.72 REMARK 3 BIN R VALUE (WORKING SET) : 0.2300 REMARK 3 BIN FREE R VALUE SET COUNT : 63 REMARK 3 BIN FREE R VALUE : 0.2890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5200 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 76 REMARK 3 SOLVENT ATOMS : 208 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.10000 REMARK 3 B22 (A**2) : -0.49000 REMARK 3 B33 (A**2) : 0.39000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.311 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.207 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.530 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5404 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7347 ; 1.373 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 665 ; 6.208 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 236 ;37.867 ;24.110 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 905 ;18.620 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;23.149 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 833 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4045 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2419 ; 0.233 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3733 ; 0.331 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 429 ; 0.199 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 8 ; 0.134 ; 0.500 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 37 ; 0.284 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.206 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3375 ; 0.904 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5375 ; 1.526 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2268 ; 0.915 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1971 ; 1.465 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 33 REMARK 3 RESIDUE RANGE : A 70 A 137 REMARK 3 RESIDUE RANGE : A 339 A 375 REMARK 3 ORIGIN FOR THE GROUP (A): -9.7300 6.9890 78.2030 REMARK 3 T TENSOR REMARK 3 T11: .0082 T22: -.0508 REMARK 3 T33: -.1208 T12: -.0196 REMARK 3 T13: .0177 T23: -.0013 REMARK 3 L TENSOR REMARK 3 L11: 1.8833 L22: 3.1497 REMARK 3 L33: 2.3232 L12: -.6298 REMARK 3 L13: -.0649 L23: -.1128 REMARK 3 S TENSOR REMARK 3 S11: .0063 S12: -.0785 S13: -.1564 REMARK 3 S21: .1428 S22: .0265 S23: .2241 REMARK 3 S31: .2842 S32: -.0496 S33: -.0328 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 34 A 69 REMARK 3 ORIGIN FOR THE GROUP (A): 6.3090 21.5700 90.8640 REMARK 3 T TENSOR REMARK 3 T11: .0414 T22: -.0093 REMARK 3 T33: -.0470 T12: -.0269 REMARK 3 T13: -.0390 T23: -.0434 REMARK 3 L TENSOR REMARK 3 L11: 1.4492 L22: 3.1546 REMARK 3 L33: 8.0682 L12: .7113 REMARK 3 L13: 1.7229 L23: 4.0497 REMARK 3 S TENSOR REMARK 3 S11: .0530 S12: .0010 S13: -.0472 REMARK 3 S21: .1880 S22: .0102 S23: -.2505 REMARK 3 S31: .3443 S32: -.2482 S33: -.0632 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 138 A 181 REMARK 3 RESIDUE RANGE : A 274 A 338 REMARK 3 RESIDUE RANGE : A 1380 A 1381 REMARK 3 ORIGIN FOR THE GROUP (A): -11.9610 19.9000 57.3920 REMARK 3 T TENSOR REMARK 3 T11: -.0713 T22: -.0252 REMARK 3 T33: -.0815 T12: .0021 REMARK 3 T13: -.0113 T23: -.0059 REMARK 3 L TENSOR REMARK 3 L11: 1.7199 L22: 2.8491 REMARK 3 L33: 2.0456 L12: .1719 REMARK 3 L13: .2565 L23: .2601 REMARK 3 S TENSOR REMARK 3 S11: .0341 S12: .1728 S13: -.0847 REMARK 3 S21: -.1619 S22: .0294 S23: .2758 REMARK 3 S31: .0177 S32: -.1054 S33: -.0636 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 182 A 273 REMARK 3 ORIGIN FOR THE GROUP (A): .3490 39.2280 65.7520 REMARK 3 T TENSOR REMARK 3 T11: -.0068 T22: -.0324 REMARK 3 T33: -.0858 T12: .0015 REMARK 3 T13: .0034 T23: -.0011 REMARK 3 L TENSOR REMARK 3 L11: 1.2262 L22: 2.1491 REMARK 3 L33: 2.5605 L12: .4071 REMARK 3 L13: -.0260 L23: -.4640 REMARK 3 S TENSOR REMARK 3 S11: .0137 S12: .0100 S13: .0731 REMARK 3 S21: .1323 S22: -.0213 S23: -.0847 REMARK 3 S31: -.2311 S32: .0963 S33: .0076 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 260 REMARK 3 RESIDUE RANGE : B 270 B 272 REMARK 3 ORIGIN FOR THE GROUP (A): 12.5640 39.4520 105.8680 REMARK 3 T TENSOR REMARK 3 T11: -.1202 T22: .0131 REMARK 3 T33: -.1116 T12: .0003 REMARK 3 T13: -.0382 T23: -.0210 REMARK 3 L TENSOR REMARK 3 L11: 1.1760 L22: 2.0462 REMARK 3 L33: 1.1405 L12: .1544 REMARK 3 L13: -.0675 L23: .4818 REMARK 3 S TENSOR REMARK 3 S11: .0742 S12: -.0559 S13: -.0171 REMARK 3 S21: .0016 S22: -.0124 S23: -.0553 REMARK 3 S31: .0552 S32: .0409 S33: -.0618 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 29 C 60 REMARK 3 ORIGIN FOR THE GROUP (A): -19.0790 15.7310 73.7850 REMARK 3 T TENSOR REMARK 3 T11: -.1728 T22: -.0366 REMARK 3 T33: -.0342 T12: .0699 REMARK 3 T13: .0998 T23: -.0466 REMARK 3 L TENSOR REMARK 3 L11: 4.0903 L22: 5.7760 REMARK 3 L33: 2.9646 L12: 2.9654 REMARK 3 L13: 2.5563 L23: .7127 REMARK 3 S TENSOR REMARK 3 S11: .0949 S12: -.1176 S13: -.2768 REMARK 3 S21: .2259 S22: .1124 S23: .1462 REMARK 3 S31: .0364 S32: -.2074 S33: -.2073 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2A41 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JUL-05. REMARK 100 THE DEPOSITION ID IS D_1000033460. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUN-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21267 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 45.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.30200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1ATN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM FORMATE, PEG3350, PH 7.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.90000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 111.14500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.53500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 111.14500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.90000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.53500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 1 REMARK 465 GLU A 2 REMARK 465 ASP A 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 157 O HOH B 1352 1.88 REMARK 500 OE2 GLU B 13 O HOH B 1324 2.12 REMARK 500 O HOH A 1436 O HOH A 1441 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 181 -156.49 -161.45 REMARK 500 ASN A 296 50.30 -141.64 REMARK 500 GLN A 353 -9.05 -55.53 REMARK 500 CYS A 374 51.14 -108.37 REMARK 500 THR B 10 55.34 37.23 REMARK 500 ASP B 58 -71.62 -100.61 REMARK 500 ASN B 74 -146.97 -115.44 REMARK 500 ASN B 74 -146.11 -116.27 REMARK 500 CYS B 101 142.69 140.05 REMARK 500 ASP B 172 -177.48 175.94 REMARK 500 CYS B 173 -127.80 53.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1381 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP A1380 O2G REMARK 620 2 ATP A1380 O1B 80.2 REMARK 620 3 HOH A1397 O 89.9 170.1 REMARK 620 4 HOH A1402 O 133.3 95.3 91.3 REMARK 620 5 HOH A1404 O 149.0 77.2 112.0 70.2 REMARK 620 6 HOH A1425 O 69.7 95.7 80.9 156.1 91.7 REMARK 620 7 HOH A1483 O 74.6 89.7 87.5 58.9 125.9 142.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1274 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 172 OD2 REMARK 620 2 ASP B 198 O 98.7 REMARK 620 3 HOH B1280 O 97.1 85.1 REMARK 620 4 HOH B1290 O 98.8 160.8 85.0 REMARK 620 5 HOH B1353 O 98.6 103.7 160.6 81.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1273 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 201 OD1 REMARK 620 2 ASP B 201 OD2 52.3 REMARK 620 3 THR B 203 OG1 75.8 128.0 REMARK 620 4 THR B 203 O 78.2 92.5 71.4 REMARK 620 5 THR B 205 O 157.7 149.7 82.3 99.0 REMARK 620 6 THR B 207 O 84.1 107.0 66.3 136.9 83.2 REMARK 620 7 HOH B1281 O 113.8 71.2 139.3 72.3 85.7 150.1 REMARK 620 8 HOH B1287 O 114.8 74.1 142.3 144.4 80.5 78.6 72.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2A3Z RELATED DB: PDB REMARK 900 RELATED ID: 2A40 RELATED DB: PDB REMARK 900 RELATED ID: 2A42 RELATED DB: PDB DBREF 2A41 A 1 375 UNP P68135 ACTS_RABIT 3 377 DBREF 2A41 B 1 260 UNP P00639 DNAS1_BOVIN 23 282 DBREF 2A41 C 29 60 UNP O43516 WASIP_HUMAN 29 60 SEQADV 2A41 HIC A 73 UNP P68135 HIS 75 MODIFIED RESIDUE SEQRES 1 A 375 ASP GLU ASP GLU THR THR ALA LEU VAL CYS ASP ASN GLY SEQRES 2 A 375 SER GLY LEU VAL LYS ALA GLY PHE ALA GLY ASP ASP ALA SEQRES 3 A 375 PRO ARG ALA VAL PHE PRO SER ILE VAL GLY ARG PRO ARG SEQRES 4 A 375 HIS GLN GLY VAL MET VAL GLY MET GLY GLN LYS ASP SER SEQRES 5 A 375 TYR VAL GLY ASP GLU ALA GLN SER LYS ARG GLY ILE LEU SEQRES 6 A 375 THR LEU LYS TYR PRO ILE GLU HIC GLY ILE ILE THR ASN SEQRES 7 A 375 TRP ASP ASP MET GLU LYS ILE TRP HIS HIS THR PHE TYR SEQRES 8 A 375 ASN GLU LEU ARG VAL ALA PRO GLU GLU HIS PRO THR LEU SEQRES 9 A 375 LEU THR GLU ALA PRO LEU ASN PRO LYS ALA ASN ARG GLU SEQRES 10 A 375 LYS MET THR GLN ILE MET PHE GLU THR PHE ASN VAL PRO SEQRES 11 A 375 ALA MET TYR VAL ALA ILE GLN ALA VAL LEU SER LEU TYR SEQRES 12 A 375 ALA SER GLY ARG THR THR GLY ILE VAL LEU ASP SER GLY SEQRES 13 A 375 ASP GLY VAL THR HIS ASN VAL PRO ILE TYR GLU GLY TYR SEQRES 14 A 375 ALA LEU PRO HIS ALA ILE MET ARG LEU ASP LEU ALA GLY SEQRES 15 A 375 ARG ASP LEU THR ASP TYR LEU MET LYS ILE LEU THR GLU SEQRES 16 A 375 ARG GLY TYR SER PHE VAL THR THR ALA GLU ARG GLU ILE SEQRES 17 A 375 VAL ARG ASP ILE LYS GLU LYS LEU CYS TYR VAL ALA LEU SEQRES 18 A 375 ASP PHE GLU ASN GLU MET ALA THR ALA ALA SER SER SER SEQRES 19 A 375 SER LEU GLU LYS SER TYR GLU LEU PRO ASP GLY GLN VAL SEQRES 20 A 375 ILE THR ILE GLY ASN GLU ARG PHE ARG CYS PRO GLU THR SEQRES 21 A 375 LEU PHE GLN PRO SER PHE ILE GLY MET GLU SER ALA GLY SEQRES 22 A 375 ILE HIS GLU THR THR TYR ASN SER ILE MET LYS CYS ASP SEQRES 23 A 375 ILE ASP ILE ARG LYS ASP LEU TYR ALA ASN ASN VAL MET SEQRES 24 A 375 SER GLY GLY THR THR MET TYR PRO GLY ILE ALA ASP ARG SEQRES 25 A 375 MET GLN LYS GLU ILE THR ALA LEU ALA PRO SER THR MET SEQRES 26 A 375 LYS ILE LYS ILE ILE ALA PRO PRO GLU ARG LYS TYR SER SEQRES 27 A 375 VAL TRP ILE GLY GLY SER ILE LEU ALA SER LEU SER THR SEQRES 28 A 375 PHE GLN GLN MET TRP ILE THR LYS GLN GLU TYR ASP GLU SEQRES 29 A 375 ALA GLY PRO SER ILE VAL HIS ARG LYS CYS PHE SEQRES 1 B 260 LEU LYS ILE ALA ALA PHE ASN ILE ARG THR PHE GLY GLU SEQRES 2 B 260 THR LYS MET SER ASN ALA THR LEU ALA SER TYR ILE VAL SEQRES 3 B 260 ARG ILE VAL ARG ARG TYR ASP ILE VAL LEU ILE GLN GLU SEQRES 4 B 260 VAL ARG ASP SER HIS LEU VAL ALA VAL GLY LYS LEU LEU SEQRES 5 B 260 ASP TYR LEU ASN GLN ASP ASP PRO ASN THR TYR HIS TYR SEQRES 6 B 260 VAL VAL SER GLU PRO LEU GLY ARG ASN SER TYR LYS GLU SEQRES 7 B 260 ARG TYR LEU PHE LEU PHE ARG PRO ASN LYS VAL SER VAL SEQRES 8 B 260 LEU ASP THR TYR GLN TYR ASP ASP GLY CYS GLU SER CYS SEQRES 9 B 260 GLY ASN ASP SER PHE SER ARG GLU PRO ALA VAL VAL LYS SEQRES 10 B 260 PHE SER SER HIS SER THR LYS VAL LYS GLU PHE ALA ILE SEQRES 11 B 260 VAL ALA LEU HIS SER ALA PRO SER ASP ALA VAL ALA GLU SEQRES 12 B 260 ILE ASN SER LEU TYR ASP VAL TYR LEU ASP VAL GLN GLN SEQRES 13 B 260 LYS TRP HIS LEU ASN ASP VAL MET LEU MET GLY ASP PHE SEQRES 14 B 260 ASN ALA ASP CYS SER TYR VAL THR SER SER GLN TRP SER SEQRES 15 B 260 SER ILE ARG LEU ARG THR SER SER THR PHE GLN TRP LEU SEQRES 16 B 260 ILE PRO ASP SER ALA ASP THR THR ALA THR SER THR ASN SEQRES 17 B 260 CYS ALA TYR ASP ARG ILE VAL VAL ALA GLY SER LEU LEU SEQRES 18 B 260 GLN SER SER VAL VAL PRO GLY SER ALA ALA PRO PHE ASP SEQRES 19 B 260 PHE GLN ALA ALA TYR GLY LEU SER ASN GLU MET ALA LEU SEQRES 20 B 260 ALA ILE SER ASP HIS TYR PRO VAL GLU VAL THR LEU THR SEQRES 1 C 32 GLU GLN ALA GLY ARG ASN ALA LEU LEU SER ASP ILE SER SEQRES 2 C 32 LYS GLY LYS LYS LEU LYS LYS THR VAL THR ASN ASP ARG SEQRES 3 C 32 SER ALA PRO ILE LEU ASP MODRES 2A41 ASN B 18 ASN GLYCOSYLATION SITE MODRES 2A41 HIC A 73 HIS 4-METHYL-HISTIDINE HET HIC A 73 11 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET CA A1381 1 HET ATP A1380 31 HET CA B1273 1 HET MG B1274 1 HET FMT B1275 3 HETNAM HIC 4-METHYL-HISTIDINE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM CA CALCIUM ION HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM FMT FORMIC ACID HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 1 HIC C7 H11 N3 O2 FORMUL 4 NAG 2(C8 H15 N O6) FORMUL 4 BMA C6 H12 O6 FORMUL 5 CA 2(CA 2+) FORMUL 6 ATP C10 H16 N5 O13 P3 FORMUL 8 MG MG 2+ FORMUL 9 FMT C H2 O2 FORMUL 10 HOH *208(H2 O) HELIX 1 1 GLY A 55 LYS A 61 1 7 HELIX 2 2 ASN A 78 ASN A 92 1 15 HELIX 3 3 ALA A 97 HIS A 101 5 5 HELIX 4 4 PRO A 112 THR A 126 1 15 HELIX 5 5 GLN A 137 SER A 145 1 9 HELIX 6 6 PRO A 172 ILE A 175 5 4 HELIX 7 7 ALA A 181 ARG A 196 1 16 HELIX 8 8 THR A 202 CYS A 217 1 16 HELIX 9 9 ASP A 222 SER A 232 1 11 HELIX 10 10 SER A 233 GLU A 237 5 5 HELIX 11 11 ASN A 252 THR A 260 1 9 HELIX 12 12 LEU A 261 PHE A 262 5 2 HELIX 13 13 GLN A 263 GLY A 268 5 6 HELIX 14 14 GLY A 273 MET A 283 1 11 HELIX 15 15 ILE A 289 ALA A 295 1 7 HELIX 16 16 GLY A 301 MET A 305 5 5 HELIX 17 17 GLY A 308 ALA A 321 1 14 HELIX 18 18 GLU A 334 LYS A 336 5 3 HELIX 19 19 TYR A 337 LEU A 349 1 13 HELIX 20 20 SER A 350 GLN A 353 5 4 HELIX 21 21 LYS A 359 GLY A 366 1 8 HELIX 22 22 ILE A 369 CYS A 374 1 6 HELIX 23 23 GLY B 12 SER B 17 1 6 HELIX 24 24 ASN B 18 ARG B 30 1 13 HELIX 25 25 LEU B 45 ASN B 56 1 12 HELIX 26 26 CYS B 101 SER B 108 5 8 HELIX 27 27 ALA B 136 SER B 138 5 3 HELIX 28 28 ASP B 139 HIS B 159 1 21 HELIX 29 29 THR B 177 SER B 183 5 7 HELIX 30 30 ILE B 184 SER B 189 1 6 HELIX 31 31 GLY B 218 SER B 223 1 6 HELIX 32 32 ASP B 234 GLY B 240 1 7 HELIX 33 33 SER B 242 SER B 250 1 9 HELIX 34 34 GLY C 32 GLY C 43 1 12 SHEET 1 A 7 ILE A 357 THR A 358 0 SHEET 2 A 7 ALA A 131 ILE A 136 -1 N MET A 132 O ILE A 357 SHEET 3 A 7 THR A 103 GLU A 107 1 N LEU A 105 O TYR A 133 SHEET 4 A 7 LEU A 8 ASN A 12 1 N LEU A 8 O LEU A 104 SHEET 5 A 7 LEU A 16 PHE A 21 -1 O LYS A 18 N ASP A 11 SHEET 6 A 7 ALA A 29 PRO A 32 -1 O PHE A 31 N VAL A 17 SHEET 7 A 7 ASN C 52 ASP C 53 1 O ASN C 52 N VAL A 30 SHEET 1 B 3 TYR A 53 VAL A 54 0 SHEET 2 B 3 VAL A 35 PRO A 38 -1 N GLY A 36 O TYR A 53 SHEET 3 B 3 LEU A 65 LYS A 68 -1 O LYS A 68 N VAL A 35 SHEET 1 C 7 GLY A 42 MET A 44 0 SHEET 2 C 7 HIS B 64 VAL B 67 1 O VAL B 67 N VAL A 43 SHEET 3 C 7 ARG B 79 PHE B 84 -1 O PHE B 84 N HIS B 64 SHEET 4 C 7 ILE B 34 VAL B 40 -1 N ILE B 37 O LEU B 81 SHEET 5 C 7 LYS B 2 PHE B 11 1 N PHE B 6 O LEU B 36 SHEET 6 C 7 VAL B 255 THR B 258 -1 O VAL B 257 N ILE B 3 SHEET 7 C 7 ALA B 231 PRO B 232 -1 N ALA B 231 O GLU B 256 SHEET 1 D 2 ILE A 71 GLU A 72 0 SHEET 2 D 2 ILE A 75 ILE A 76 -1 O ILE A 75 N GLU A 72 SHEET 1 E 3 TYR A 169 ALA A 170 0 SHEET 2 E 3 THR A 160 TYR A 166 -1 N TYR A 166 O TYR A 169 SHEET 3 E 3 MET A 176 LEU A 178 -1 O LEU A 178 N THR A 160 SHEET 1 F 5 TYR A 169 ALA A 170 0 SHEET 2 F 5 THR A 160 TYR A 166 -1 N TYR A 166 O TYR A 169 SHEET 3 F 5 GLY A 150 SER A 155 -1 N GLY A 150 O ILE A 165 SHEET 4 F 5 ASN A 297 SER A 300 1 O VAL A 298 N LEU A 153 SHEET 5 F 5 ILE A 329 ILE A 330 1 O ILE A 330 N ASN A 297 SHEET 1 G 2 SER A 239 GLU A 241 0 SHEET 2 G 2 VAL A 247 THR A 249 -1 O ILE A 248 N TYR A 240 SHEET 1 H 6 SER B 90 GLN B 96 0 SHEET 2 H 6 ALA B 114 SER B 119 -1 O SER B 119 N SER B 90 SHEET 3 H 6 GLU B 127 ALA B 132 -1 O PHE B 128 N PHE B 118 SHEET 4 H 6 VAL B 163 ASP B 168 1 O MET B 164 N VAL B 131 SHEET 5 H 6 ASP B 212 ALA B 217 -1 O VAL B 215 N LEU B 165 SHEET 6 H 6 PHE B 192 TRP B 194 -1 N GLN B 193 O VAL B 216 SSBOND 1 CYS B 101 CYS B 104 1555 1555 2.06 SSBOND 2 CYS B 173 CYS B 209 1555 1555 2.09 LINK C GLU A 72 N HIC A 73 1555 1555 1.33 LINK C HIC A 73 N GLY A 74 1555 1555 1.32 LINK ND2 ASN B 18 C1 NAG D 1 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.44 LINK O2G ATP A1380 CA CA A1381 1555 1555 2.29 LINK O1B ATP A1380 CA CA A1381 1555 1555 2.26 LINK CA CA A1381 O HOH A1397 1555 1555 2.33 LINK CA CA A1381 O HOH A1402 1555 1555 2.41 LINK CA CA A1381 O HOH A1404 1555 1555 2.27 LINK CA CA A1381 O HOH A1425 1555 1555 2.58 LINK CA CA A1381 O HOH A1483 1555 1555 2.15 LINK OD2 ASP B 172 MG MG B1274 1555 1555 2.34 LINK O ASP B 198 MG MG B1274 1555 1555 2.22 LINK OD1 ASP B 201 CA CA B1273 1555 1555 2.49 LINK OD2 ASP B 201 CA CA B1273 1555 1555 2.45 LINK OG1 THR B 203 CA CA B1273 1555 1555 2.50 LINK O THR B 203 CA CA B1273 1555 1555 2.44 LINK O THR B 205 CA CA B1273 1555 1555 2.47 LINK O THR B 207 CA CA B1273 1555 1555 2.40 LINK CA CA B1273 O HOH B1281 1555 1555 2.39 LINK CA CA B1273 O HOH B1287 1555 1555 2.47 LINK MG MG B1274 O HOH B1280 1555 1555 2.47 LINK MG MG B1274 O HOH B1290 1555 1555 2.73 LINK MG MG B1274 O HOH B1353 1555 1555 2.70 CRYST1 41.800 77.070 222.290 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023923 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012975 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004499 0.00000