PDB Short entry for 2A5T HEADER METAL TRANSPORT,MEMBRANE PROTEIN 30-JUN-05 2A5T TITLE CRYSTAL STRUCTURE OF THE NR1/NR2A LIGAND-BINDING CORES COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-METHYL-D-ASPARTATE RECEPTOR NMDAR1-4A SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: S1S2 LIGAND-BINDING CORE; COMPND 5 SYNONYM: NMDA RECEPTOR NR1 SUBUNIT; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: CONSTRUCT OF RESIDUES 394-544 AND 663-800 OF GB COMPND 8 AAB50932; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: N-METHYL-D-ASPARTATE RECEPTOR NMDAR2A SUBUNIT; COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: S1S2 LIGAND-BINDING CORE; COMPND 13 SYNONYM: NMDA RECEPTOR NR2A SUBUNIT; NMDA RECEPTOR NMDAR2A SUBUNIT; COMPND 14 GLUTAMATE RECEPTOR, IONOTROPIC, N-METHYL D-ASPARTATE 2A; COMPND 15 ENGINEERED: YES; COMPND 16 OTHER_DETAILS: CONSTRUCT OF RESIDUES 401-539 AND 661-802 OF GB COMPND 17 AAB58801 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS, CANIS LUPUS FAMILIARIS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116, 9615; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ORIGAMIB (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET22B; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 12 ORGANISM_COMMON: NORWAY RAT; SOURCE 13 ORGANISM_TAXID: 10116; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: ORIGAMIB (DE3); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS PROTEIN-LIGAND COMPLEX, METAL TRANSPORT, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.FURUKAWA,S.K.SINGH,R.MANCUSSO,E.GOUAUX REVDAT 3 26-JUL-17 2A5T 1 SOURCE REMARK REVDAT 2 24-FEB-09 2A5T 1 VERSN REVDAT 1 15-NOV-05 2A5T 0 JRNL AUTH H.FURUKAWA,S.K.SINGH,R.MANCUSSO,E.GOUAUX JRNL TITL SUBUNIT ARRANGEMENT AND FUNCTION IN NMDA RECEPTORS JRNL REF NATURE V. 438 185 2005 JRNL REFN ISSN 0028-0836 JRNL PMID 16281028 JRNL DOI 10.1038/NATURE04089 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1836296.790 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.2 REMARK 3 NUMBER OF REFLECTIONS : 39898 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 4011 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.13 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 68.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4281 REMARK 3 BIN R VALUE (WORKING SET) : 0.2420 REMARK 3 BIN FREE R VALUE : 0.2980 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 480 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.014 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4171 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 342 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.42000 REMARK 3 B22 (A**2) : -0.08000 REMARK 3 B33 (A**2) : -0.34000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM SIGMAA (A) : 0.17 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.21 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.820 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.340 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.040 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.200 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.150 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 51.20 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : LIG.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : LIG.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2A5T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JUL-05. REMARK 100 THE DEPOSITION ID IS D_1000033523. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JAN-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7. REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.010 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44066 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, HEPES, CALCIUM ACETATE, PH REMARK 280 7., EVAPORATION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.32000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.05800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.99450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.05800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.32000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.99450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 MET A 2 REMARK 465 SER A 3 REMARK 465 ASP A 49 REMARK 465 THR A 50 REMARK 465 SER A 51 REMARK 465 PRO A 52 REMARK 465 GLY A 53 REMARK 465 SER A 54 REMARK 465 PRO A 55 REMARK 465 ARG A 56 REMARK 465 HIS A 57 REMARK 465 ASN A 99 REMARK 465 ASN A 100 REMARK 465 SER A 101 REMARK 465 ASN A 102 REMARK 465 GLN A 288 REMARK 465 GLU A 289 REMARK 465 CYS A 290 REMARK 465 ASP A 291 REMARK 465 SER A 292 REMARK 465 GLY B 3 REMARK 465 PRO B 4 REMARK 465 ASP B 5 REMARK 465 ASP B 6 REMARK 465 SER B 236 REMARK 465 GLY B 237 REMARK 465 HIS B 285 REMARK 465 ASN B 286 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 4 OG1 CG2 REMARK 470 LYS A 7 CG CD CE NZ REMARK 470 SER A 24 OG REMARK 470 VAL A 34 CG1 CG2 REMARK 470 ASN A 48 CG OD1 ND2 REMARK 470 ARG A 76 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 83 CG CD OE1 OE2 REMARK 470 GLU A 96 CG CD OE1 OE2 REMARK 470 ARG A 97 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 98 CG1 CG2 REMARK 470 LYS A 103 CG CD CE NZ REMARK 470 LYS A 104 CG CD CE NZ REMARK 470 LYS A 151 CG CD CE NZ REMARK 470 LYS A 152 CG CD CE NZ REMARK 470 ARG A 155 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 169 CG OD1 OD2 REMARK 470 LYS A 170 CG CD CE NZ REMARK 470 ARG A 187 CG CD NE CZ NH1 NH2 REMARK 470 SER A 192 OG REMARK 470 GLU A 199 CG CD OE1 OE2 REMARK 470 LYS A 200 CG CD CE NZ REMARK 470 LYS A 217 CG CD CE NZ REMARK 470 GLN A 234 CG CD OE1 NE2 REMARK 470 THR A 241 OG1 CG2 REMARK 470 GLU A 243 CG CD OE1 OE2 REMARK 470 LYS A 282 CG CD CE NZ REMARK 470 ARG A 286 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 287 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASN B 7 CG OD1 ND2 REMARK 470 LEU B 28 CG CD1 CD2 REMARK 470 THR B 29 OG1 CG2 REMARK 470 VAL B 33 CG1 CG2 REMARK 470 ARG B 34 CG CD NE CZ NH1 NH2 REMARK 470 SER B 48 OG REMARK 470 THR B 49 OG1 CG2 REMARK 470 LYS B 75 CG CD CE NZ REMARK 470 GLN B 145 CG CD OE1 NE2 REMARK 470 SER B 150 OG REMARK 470 LYS B 152 CG CD CE NZ REMARK 470 LYS B 153 CG CD CE NZ REMARK 470 SER B 161 OG REMARK 470 ARG B 179 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 195 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 208 CG CD CE NZ REMARK 470 GLU B 227 CG CD OE1 OE2 REMARK 470 LYS B 230 CG CD CE NZ REMARK 470 TYR B 238 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 251 CG CD CE NZ REMARK 470 GLU B 274 CG CD OE1 OE2 REMARK 470 GLU B 276 CG CD OE1 OE2 REMARK 470 ILE B 283 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 167 C - N - CA ANGL. DEV. = 9.1 DEGREES REMARK 500 PRO B 162 C - N - CA ANGL. DEV. = -10.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 13 89.20 -169.79 REMARK 500 GLN A 144 -148.95 -161.31 REMARK 500 GLU A 243 103.61 79.58 REMARK 500 VAL A 285 -83.79 -108.82 REMARK 500 ARG A 286 81.35 -61.78 REMARK 500 GLU B 16 92.72 -169.15 REMARK 500 THR B 29 -50.03 152.78 REMARK 500 VAL B 33 -169.19 -115.84 REMARK 500 ARG B 34 -132.50 56.63 REMARK 500 LYS B 75 72.05 59.95 REMARK 500 LYS B 87 -112.18 -118.73 REMARK 500 SER B 161 -100.02 -43.59 REMARK 500 THR B 243 -149.20 -157.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLY A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLU B 2002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1PB7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE NR1 LIGAND BINDING CORE IN COMPLEX WITH REMARK 900 GLYCINE AT 1.35 ANGSTROMS RESOLUTION REMARK 900 RELATED ID: 2A5S RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE NR2A LIGAND BINDING CORE IN COMPLEX WITH REMARK 900 GLUTAMATE DBREF 2A5T A 2 152 UNP P35439 NMDZ1_RAT 394 544 DBREF 2A5T A 155 292 GB 475566 AAB50932 663 800 DBREF 2A5T B 4 142 UNP Q00959 NMDE1_RAT 401 539 DBREF 2A5T B 145 286 GB 2155310 AAB58801 661 802 SEQADV 2A5T GLY A 1 UNP P35439 SEE REMARK 999 SEQADV 2A5T ASN A 129 UNP P35439 TYR 529 CONFLICT SEQADV 2A5T GLY A 153 UNP P35439 SEE REMARK 999 SEQADV 2A5T THR A 154 UNP P35439 SEE REMARK 999 SEQADV 2A5T GLY B 3 UNP Q00959 SEE REMARK 999 SEQADV 2A5T GLY B 143 UNP Q00959 SEE REMARK 999 SEQADV 2A5T THR B 144 UNP Q00959 SEE REMARK 999 SEQRES 1 A 292 GLY MET SER THR ARG LEU LYS ILE VAL THR ILE HIS GLN SEQRES 2 A 292 GLU PRO PHE VAL TYR VAL LYS PRO THR MET SER ASP GLY SEQRES 3 A 292 THR CYS LYS GLU GLU PHE THR VAL ASN GLY ASP PRO VAL SEQRES 4 A 292 LYS LYS VAL ILE CYS THR GLY PRO ASN ASP THR SER PRO SEQRES 5 A 292 GLY SER PRO ARG HIS THR VAL PRO GLN CYS CYS TYR GLY SEQRES 6 A 292 PHE CYS ILE ASP LEU LEU ILE LYS LEU ALA ARG THR MET SEQRES 7 A 292 ASN PHE THR TYR GLU VAL HIS LEU VAL ALA ASP GLY LYS SEQRES 8 A 292 PHE GLY THR GLN GLU ARG VAL ASN ASN SER ASN LYS LYS SEQRES 9 A 292 GLU TRP ASN GLY MET MET GLY GLU LEU LEU SER GLY GLN SEQRES 10 A 292 ALA ASP MET ILE VAL ALA PRO LEU THR ILE ASN ASN GLU SEQRES 11 A 292 ARG ALA GLN TYR ILE GLU PHE SER LYS PRO PHE LYS TYR SEQRES 12 A 292 GLN GLY LEU THR ILE LEU VAL LYS LYS GLY THR ARG ILE SEQRES 13 A 292 THR GLY ILE ASN ASP PRO ARG LEU ARG ASN PRO SER ASP SEQRES 14 A 292 LYS PHE ILE TYR ALA THR VAL LYS GLN SER SER VAL ASP SEQRES 15 A 292 ILE TYR PHE ARG ARG GLN VAL GLU LEU SER THR MET TYR SEQRES 16 A 292 ARG HIS MET GLU LYS HIS ASN TYR GLU SER ALA ALA GLU SEQRES 17 A 292 ALA ILE GLN ALA VAL ARG ASP ASN LYS LEU HIS ALA PHE SEQRES 18 A 292 ILE TRP ASP SER ALA VAL LEU GLU PHE GLU ALA SER GLN SEQRES 19 A 292 LYS CYS ASP LEU VAL THR THR GLY GLU LEU PHE PHE ARG SEQRES 20 A 292 SER GLY PHE GLY ILE GLY MET ARG LYS ASP SER PRO TRP SEQRES 21 A 292 LYS GLN ASN VAL SER LEU SER ILE LEU LYS SER HIS GLU SEQRES 22 A 292 ASN GLY PHE MET GLU ASP LEU ASP LYS THR TRP VAL ARG SEQRES 23 A 292 TYR GLN GLU CYS ASP SER SEQRES 1 B 284 GLY PRO ASP ASP ASN HIS LEU SER ILE VAL THR LEU GLU SEQRES 2 B 284 GLU ALA PRO PHE VAL ILE VAL GLU ASP ILE ASP PRO LEU SEQRES 3 B 284 THR GLU THR CYS VAL ARG ASN THR VAL PRO CYS ARG LYS SEQRES 4 B 284 PHE VAL LYS ILE ASN ASN SER THR ASN GLU GLY MET ASN SEQRES 5 B 284 VAL LYS LYS CYS CYS LYS GLY PHE CYS ILE ASP ILE LEU SEQRES 6 B 284 LYS LYS LEU SER ARG THR VAL LYS PHE THR TYR ASP LEU SEQRES 7 B 284 TYR LEU VAL THR ASN GLY LYS HIS GLY LYS LYS VAL ASN SEQRES 8 B 284 ASN VAL TRP ASN GLY MET ILE GLY GLU VAL VAL TYR GLN SEQRES 9 B 284 ARG ALA VAL MET ALA VAL GLY SER LEU THR ILE ASN GLU SEQRES 10 B 284 GLU ARG SER GLU VAL VAL ASP PHE SER VAL PRO PHE VAL SEQRES 11 B 284 GLU THR GLY ILE SER VAL MET VAL SER ARG GLY THR GLN SEQRES 12 B 284 VAL THR GLY LEU SER ASP LYS LYS PHE GLN ARG PRO HIS SEQRES 13 B 284 ASP TYR SER PRO PRO PHE ARG PHE GLY THR VAL PRO ASN SEQRES 14 B 284 GLY SER THR GLU ARG ASN ILE ARG ASN ASN TYR PRO TYR SEQRES 15 B 284 MET HIS GLN TYR MET THR ARG PHE ASN GLN ARG GLY VAL SEQRES 16 B 284 GLU ASP ALA LEU VAL SER LEU LYS THR GLY LYS LEU ASP SEQRES 17 B 284 ALA PHE ILE TYR ASP ALA ALA VAL LEU ASN TYR LYS ALA SEQRES 18 B 284 GLY ARG ASP GLU GLY CYS LYS LEU VAL THR ILE GLY SER SEQRES 19 B 284 GLY TYR ILE PHE ALA THR THR GLY TYR GLY ILE ALA LEU SEQRES 20 B 284 GLN LYS GLY SER PRO TRP LYS ARG GLN ILE ASP LEU ALA SEQRES 21 B 284 LEU LEU GLN PHE VAL GLY ASP GLY GLU MET GLU GLU LEU SEQRES 22 B 284 GLU THR LEU TRP LEU THR GLY ILE CYS HIS ASN HET GLY A1001 5 HET GLU B2002 10 HETNAM GLY GLYCINE HETNAM GLU GLUTAMIC ACID FORMUL 3 GLY C2 H5 N O2 FORMUL 4 GLU C5 H9 N O4 FORMUL 5 HOH *342(H2 O) HELIX 1 1 GLY A 65 MET A 78 1 14 HELIX 2 2 ASN A 107 SER A 115 1 9 HELIX 3 3 ASN A 128 GLN A 133 1 6 HELIX 4 4 ASP A 161 ASN A 166 1 6 HELIX 5 5 SER A 179 GLN A 188 1 10 HELIX 6 6 LEU A 191 GLU A 199 1 9 HELIX 7 7 SER A 205 ASP A 215 1 11 HELIX 8 8 SER A 225 LYS A 235 1 11 HELIX 9 9 TRP A 260 ASN A 274 1 15 HELIX 10 10 GLY A 275 VAL A 285 1 11 HELIX 11 11 GLY B 61 LYS B 75 1 15 HELIX 12 12 ASN B 97 TYR B 105 1 9 HELIX 13 13 ASN B 118 GLU B 123 1 6 HELIX 14 14 ASP B 151 ARG B 156 1 6 HELIX 15 15 PRO B 157 TYR B 160 5 4 HELIX 16 16 GLY B 172 TYR B 182 1 11 HELIX 17 17 TYR B 182 THR B 190 1 9 HELIX 18 18 ARG B 191 ASN B 193 5 3 HELIX 19 19 GLY B 196 THR B 206 1 11 HELIX 20 20 ALA B 216 ARG B 225 1 10 HELIX 21 21 TRP B 255 ASP B 269 1 15 HELIX 22 22 GLY B 270 LEU B 280 1 11 SHEET 1 A 6 TYR A 18 PRO A 21 0 SHEET 2 A 6 VAL A 59 TYR A 64 -1 O CYS A 62 N LYS A 20 SHEET 3 A 6 VAL A 42 GLY A 46 -1 N VAL A 42 O CYS A 63 SHEET 4 A 6 TYR A 82 LEU A 86 1 O LEU A 86 N THR A 45 SHEET 5 A 6 LEU A 6 THR A 10 1 N ILE A 8 O GLU A 83 SHEET 6 A 6 MET A 120 ILE A 121 1 O MET A 120 N VAL A 9 SHEET 1 B 2 GLN A 95 GLU A 96 0 SHEET 2 B 2 GLU A 105 TRP A 106 -1 O GLU A 105 N GLU A 96 SHEET 1 C 2 ILE A 135 PHE A 137 0 SHEET 2 C 2 GLY A 253 ARG A 255 -1 O MET A 254 N GLU A 136 SHEET 1 D 4 TYR A 173 ALA A 174 0 SHEET 2 D 4 ALA A 220 ASP A 224 1 O ILE A 222 N ALA A 174 SHEET 3 D 4 LYS A 142 LYS A 151 -1 N LEU A 149 O PHE A 221 SHEET 4 D 4 LEU A 238 PHE A 250 -1 O THR A 241 N ILE A 148 SHEET 1 E 8 ILE B 21 ASP B 24 0 SHEET 2 E 8 GLY B 52 LYS B 60 -1 O LYS B 60 N ILE B 21 SHEET 3 E 8 VAL B 37 LYS B 44 -1 N LYS B 41 O VAL B 55 SHEET 4 E 8 THR B 77 LEU B 82 1 O LEU B 82 N ARG B 40 SHEET 5 E 8 HIS B 8 THR B 13 1 N LEU B 9 O THR B 77 SHEET 6 E 8 MET B 110 ALA B 111 1 O MET B 110 N VAL B 12 SHEET 7 E 8 ALA B 248 GLN B 250 -1 O ALA B 248 N ALA B 111 SHEET 8 E 8 VAL B 125 PHE B 127 -1 N ASP B 126 O LEU B 249 SHEET 1 F 2 LYS B 91 VAL B 92 0 SHEET 2 F 2 VAL B 95 TRP B 96 -1 O VAL B 95 N VAL B 92 SHEET 1 G 4 PHE B 166 GLY B 167 0 SHEET 2 G 4 ALA B 211 ASP B 215 1 O ILE B 213 N GLY B 167 SHEET 3 G 4 VAL B 132 SER B 141 -1 N MET B 139 O PHE B 212 SHEET 4 G 4 LEU B 231 THR B 233 -1 O VAL B 232 N VAL B 140 SHEET 1 H 4 PHE B 166 GLY B 167 0 SHEET 2 H 4 ALA B 211 ASP B 215 1 O ILE B 213 N GLY B 167 SHEET 3 H 4 VAL B 132 SER B 141 -1 N MET B 139 O PHE B 212 SHEET 4 H 4 PHE B 240 TYR B 245 -1 O PHE B 240 N ILE B 136 SSBOND 1 CYS A 28 CYS A 62 1555 1555 2.04 SSBOND 2 CYS A 44 CYS A 63 1555 1555 2.04 SSBOND 3 CYS B 32 CYS B 58 1555 1555 2.04 SSBOND 4 CYS B 39 CYS B 59 1555 1555 2.05 SSBOND 5 CYS B 229 CYS B 284 1555 1555 2.04 CISPEP 1 GLU A 14 PRO A 15 0 0.13 CISPEP 2 ALA B 17 PRO B 18 0 0.27 SITE 1 AC1 8 PHE A 92 PRO A 124 LEU A 125 THR A 126 SITE 2 AC1 8 ARG A 131 SER A 179 SER A 180 ASP A 224 SITE 1 AC2 11 HIS B 88 SER B 114 THR B 116 ARG B 121 SITE 2 AC2 11 GLY B 172 SER B 173 THR B 174 TYR B 214 SITE 3 AC2 11 ASP B 215 HOH B2004 HOH B2019 CRYST1 54.640 89.989 126.116 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018302 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011112 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007929 0.00000