PDB Short entry for 2ABT HEADER OXIDOREDUCTASE 16-JUL-05 2ABT TITLE HUMAN 15-LIPOXYGENASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARACHIDONATE 15-LIPOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ARACHIDONATE OMEGA-6 LIPOXYGENASE, 15-LOX; COMPND 5 EC: 1.13.11.33 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN KEYWDS HUMAN 12-LIPOXYGENASE EXPDTA THEORETICAL MODEL AUTHOR P.ARUL PRAKASAM,P.P.MATHUR REVDAT 1 02-AUG-05 2ABT 0 JRNL AUTH P.ARUL PRAKASAM,P.P.MATHUR JRNL TITL STRUCTURE OF HUMAN 15-LIPOXYGENASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : MODELLER 7V7 REMARK 3 AUTHORS : A. SALI & T.L. BLUNDELL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2ABT COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-JUL-2005. REMARK 100 THE RCSB ID CODE IS RCSB033720. REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: THIS STRUCTURE WAS PRODUCED BY MODELLER7V7 AND REMARK 220 SUBJECTED TO 1 NANOSECOND MOLECULAR DYNAMICS SIMULATION REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 174 CA GLU A 174 C 0.171 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TRP A 75 CE2 - CD2 - CE3 ANGL. DEV. =-62.6 DEGREES REMARK 500 TRP A 75 CG - CD2 - CE3 ANGL. DEV. = 17.8 DEGREES REMARK 500 TRP A 75 CE3 - CZ3 - CH2 ANGL. DEV. =-41.7 DEGREES REMARK 500 GLN A 316 CG - CD - OE1 ANGL. DEV. =-75.7 DEGREES REMARK 500 GLN A 316 CG - CD - NE2 ANGL. DEV. =-23.1 DEGREES REMARK 500 GLN A 510 CG - CD - OE1 ANGL. DEV. =-74.8 DEGREES REMARK 500 GLN A 510 CG - CD - NE2 ANGL. DEV. =-23.7 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 306 ASP A 307 -137.38 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ABU RELATED DB: PDB REMARK 900 HUMAN 12-LIPOXYGENASE REMARK 900 RELATED ID: 2ABV RELATED DB: PDB REMARK 900 HUMAN 5-LIPOXYGENASE DBREF 2ABT A 1 661 UNP P16050 LOX15_HUMAN 1 661 SEQRES 1 A 661 GLY LEU TYR ARG ILE ARG VAL SER THR GLY ALA SER LEU SEQRES 2 A 661 TYR ALA GLY SER ASN ASN GLN VAL GLN LEU TRP LEU VAL SEQRES 3 A 661 GLY GLN HIS GLY GLU ALA ALA LEU GLY LYS ARG LEU TRP SEQRES 4 A 661 PRO ALA ARG GLY LYS GLU THR GLU LEU LYS VAL GLU VAL SEQRES 5 A 661 PRO GLU TYR LEU GLY PRO LEU LEU PHE VAL LYS LEU ARG SEQRES 6 A 661 LYS ARG HIS LEU LEU LYS ASP ASP ALA TRP PHE CYS ASN SEQRES 7 A 661 TRP ILE SER VAL GLN GLY PRO GLY ALA GLY ASP GLU VAL SEQRES 8 A 661 ARG PHE PRO CYS TYR ARG TRP VAL GLU GLY ASN GLY VAL SEQRES 9 A 661 LEU SER LEU PRO GLU GLY THR GLY ARG THR VAL GLY GLU SEQRES 10 A 661 ASP PRO GLN GLY LEU PHE GLN LYS HIS ARG GLU GLU GLU SEQRES 11 A 661 LEU GLU GLU ARG ARG LYS LEU TYR ARG TRP GLY ASN TRP SEQRES 12 A 661 LYS ASP GLY LEU ILE LEU ASN MET ALA GLY ALA LYS LEU SEQRES 13 A 661 TYR ASP LEU PRO VAL ASP GLU ARG PHE LEU GLU ASP LYS SEQRES 14 A 661 ARG VAL ASP PHE GLU VAL SER LEU ALA LYS GLY LEU ALA SEQRES 15 A 661 ASP LEU ALA ILE LYS ASP SER LEU ASN VAL LEU THR CYS SEQRES 16 A 661 TRP LYS ASP LEU ASP ASP PHE ASN ARG ILE PHE TRP CYS SEQRES 17 A 661 GLY GLN SER LYS LEU ALA GLU ARG VAL ARG ASP SER TRP SEQRES 18 A 661 LYS GLU ASP ALA LEU PHE GLY TYR GLN PHE LEU ASN GLY SEQRES 19 A 661 ALA ASN PRO VAL VAL LEU ARG ARG SER ALA HIS LEU PRO SEQRES 20 A 661 ALA ARG LEU VAL PHE PRO PRO GLY MET GLU GLU LEU GLN SEQRES 21 A 661 ALA GLN LEU GLU LYS GLU LEU GLU GLY GLY THR LEU PHE SEQRES 22 A 661 GLU ALA ASP PHE SER LEU LEU ASP GLY ILE LYS ALA ASN SEQRES 23 A 661 VAL ILE LEU CYS SER GLN GLN HIS LEU ALA ALA PRO LEU SEQRES 24 A 661 VAL MET LEU LYS LEU GLN PRO ASP GLY LYS LEU LEU PRO SEQRES 25 A 661 MET VAL ILE GLN LEU GLN LEU PRO ARG THR GLY SER PRO SEQRES 26 A 661 PRO PRO PRO LEU PHE LEU PRO THR ASP PRO PRO MET ALA SEQRES 27 A 661 TRP LEU LEU ALA LYS CYS TRP VAL ARG SER SER ASP PHE SEQRES 28 A 661 GLN LEU HIS GLU LEU GLN SER HIS LEU LEU ARG GLY HIS SEQRES 29 A 661 LEU MET ALA GLU VAL ILE VAL VAL ALA THR MET ARG CYS SEQRES 30 A 661 LEU PRO SER ILE HIS PRO ILE PHE LYS LEU ILE ILE PRO SEQRES 31 A 661 HIS LEU ARG TYR THR LEU GLU ILE ASN VAL ARG ALA ARG SEQRES 32 A 661 THR GLY LEU VAL SER ASP MET GLY ILE PHE ASP GLN ILE SEQRES 33 A 661 MET SER THR GLY GLY GLY GLY HIS VAL GLN LEU LEU LYS SEQRES 34 A 661 GLN ALA GLY ALA PHE LEU THR TYR SER SER PHE CYS PRO SEQRES 35 A 661 PRO ASP ASP LEU ALA ASP ARG GLY LEU LEU GLY VAL LYS SEQRES 36 A 661 SER SER PHE TYR ALA GLN ASP ALA LEU ARG LEU TRP GLU SEQRES 37 A 661 ILE ILE TYR ARG TYR VAL GLU GLY ILE VAL SER LEU HIS SEQRES 38 A 661 TYR LYS THR ASP VAL ALA VAL LYS ASP ASP PRO GLU LEU SEQRES 39 A 661 GLN THR TRP CYS ARG GLU ILE THR GLU ILE GLY LEU GLN SEQRES 40 A 661 GLY ALA GLN ASP ARG GLY PHE PRO VAL SER LEU GLN ALA SEQRES 41 A 661 ARG ASP GLN VAL CYS HIS PHE VAL THR MET CYS ILE PHE SEQRES 42 A 661 THR CYS THR GLY GLN HIS ALA SER VAL HIS LEU GLY GLN SEQRES 43 A 661 LEU ASP TRP TYR SER TRP VAL PRO ASN ALA PRO CYS THR SEQRES 44 A 661 MET ARG LEU PRO PRO PRO THR THR LYS ASP ALA THR LEU SEQRES 45 A 661 GLU THR VAL MET ALA THR LEU PRO ASN PHE HIS GLN ALA SEQRES 46 A 661 SER LEU GLN MET SER ILE THR TRP GLN LEU GLY ARG ARG SEQRES 47 A 661 GLN PRO VAL MET VAL ALA VAL GLY GLN HIS GLU GLU GLU SEQRES 48 A 661 TYR PHE SER GLY PRO GLU PRO LYS ALA VAL LEU LYS LYS SEQRES 49 A 661 PHE ARG GLU GLU LEU ALA ALA LEU ASP LYS GLU ILE GLU SEQRES 50 A 661 ILE ARG ASN ALA LYS LEU ASP MET PRO TYR GLU TYR LEU SEQRES 51 A 661 ARG PRO SER VAL VAL GLU ASN SER VAL ALA ILE HET FE2 A 662 1 HETNAM FE2 FE (II) ION FORMUL 2 FE2 FE 2+ HELIX 1 1 PHE A 123 TYR A 138 1 16 HELIX 2 2 LYS A 155 LEU A 159 5 5 HELIX 3 3 PRO A 160 ARG A 164 5 5 HELIX 4 4 LEU A 166 PHE A 173 1 8 HELIX 5 5 ASP A 198 ILE A 205 5 8 HELIX 6 6 SER A 211 TRP A 221 1 11 HELIX 7 7 GLU A 223 GLY A 234 1 12 HELIX 8 8 MET A 256 GLY A 270 1 15 HELIX 9 9 SER A 278 ASP A 281 5 4 HELIX 10 10 PRO A 335 GLN A 357 1 23 HELIX 11 11 GLY A 363 LEU A 378 1 16 HELIX 12 12 HIS A 382 ILE A 389 1 8 HELIX 13 13 PRO A 390 ARG A 393 5 4 HELIX 14 14 TYR A 394 ARG A 403 1 10 HELIX 15 15 GLY A 411 MET A 417 1 7 HELIX 16 16 GLY A 422 GLY A 432 1 11 HELIX 17 17 ALA A 433 LEU A 435 5 3 HELIX 18 18 TYR A 437 PHE A 440 5 4 HELIX 19 19 CYS A 441 ARG A 449 1 9 HELIX 20 20 SER A 457 TYR A 482 1 26 HELIX 21 21 THR A 484 ASP A 491 1 8 HELIX 22 22 ASP A 491 GLU A 503 1 13 HELIX 23 23 GLY A 508 GLY A 513 5 6 HELIX 24 24 ALA A 520 THR A 536 1 17 HELIX 25 25 THR A 536 LEU A 544 1 9 HELIX 26 26 GLY A 545 TYR A 550 1 6 HELIX 27 27 TRP A 552 ALA A 556 5 5 HELIX 28 28 THR A 571 LEU A 579 1 9 HELIX 29 29 ASN A 581 LEU A 595 1 15 HELIX 30 30 ARG A 598 MET A 602 5 5 HELIX 31 31 GLY A 615 LEU A 643 1 29 SHEET 1 A 4 GLU A 45 GLU A 51 0 SHEET 2 A 4 LEU A 2 THR A 9 -1 N TYR A 3 O VAL A 50 SHEET 3 A 4 TRP A 75 GLN A 83 -1 O SER A 81 N ARG A 6 SHEET 4 A 4 VAL A 91 VAL A 99 -1 O VAL A 99 N TRP A 75 SHEET 1 B 4 GLU A 31 LEU A 38 0 SHEET 2 B 4 GLN A 20 GLY A 27 -1 N LEU A 23 O LEU A 34 SHEET 3 B 4 LEU A 59 ARG A 67 -1 O ARG A 65 N GLN A 22 SHEET 4 B 4 VAL A 104 PRO A 108 -1 O LEU A 107 N VAL A 62 SHEET 1 C 2 TRP A 140 GLY A 141 0 SHEET 2 C 2 ASN A 150 MET A 151 -1 O ASN A 150 N GLY A 141 SHEET 1 D 5 ARG A 241 ARG A 242 0 SHEET 2 D 5 LEU A 272 ASP A 276 -1 O GLU A 274 N ARG A 241 SHEET 3 D 5 LEU A 299 LEU A 304 -1 O LEU A 302 N PHE A 273 SHEET 4 D 5 LEU A 310 GLN A 316 -1 O MET A 313 N MET A 301 SHEET 5 D 5 LEU A 329 PHE A 330 -1 O PHE A 330 N ILE A 315 SHEET 1 E 2 VAL A 287 ILE A 288 0 SHEET 2 E 2 SER A 291 GLN A 292 -1 O SER A 291 N ILE A 288 LINK FE FE2 A 662 NE2 HIS A 359 LINK FE FE2 A 662 NE2 HIS A 364 LINK FE FE2 A 662 NE2 HIS A 539 LINK FE FE2 A 662 OXT ILE A 661 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000