PDB Short entry for 2ADF HEADER BLOOD CLOTTING/IMMUNE SYSTEM 20-JUL-05 2ADF TITLE CRYSTAL STRUCTURE AND PARATOPE DETERMINATION OF 82D6A3, AN TITLE 2 ANTITHROMBOTIC ANTIBODY DIRECTED AGAINST THE VON WILLEBRAND FACTOR TITLE 3 A3-DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: VON WILLEBRAND FACTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: A3 DOMAIN; COMPND 5 SYNONYM: VWF; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 82D6A3 IGG; COMPND 9 CHAIN: H; COMPND 10 FRAGMENT: FAB; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: 82D6A3 IGG; COMPND 13 CHAIN: L; COMPND 14 FRAGMENT: FAB SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PET; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 12 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 13 ORGANISM_TAXID: 10090; SOURCE 14 SECRETION: ASCITES; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 17 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 18 ORGANISM_TAXID: 10090; SOURCE 19 SECRETION: ASCITES KEYWDS ON WILLEBRAND FACTOR, A3-DOMAIN, 82D6A3, COLLAGEN BINDING, PARATOPE, KEYWDS 2 EPITOPE, ANTITHROMBOTIC, BLOOD CLOTTING-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.STAELENS,M.A.HADDERS,S.VAUTERIN,C.PLATTEAU,K.VANHOORELBEKE, AUTHOR 2 E.G.HUIZINGA,H.DECKMYN REVDAT 4 13-JUL-11 2ADF 1 VERSN REVDAT 3 24-FEB-09 2ADF 1 VERSN REVDAT 2 25-SEP-07 2ADF 1 JRNL REVDAT 1 06-DEC-05 2ADF 0 JRNL AUTH S.STAELENS,M.A.HADDERS,S.VAUTERIN,C.PLATTEAU,M.DE MAEYER, JRNL AUTH 2 K.VANHOORELBEKE,E.G.HUIZINGA,H.DECKMYN JRNL TITL PARATOPE DETERMINATION OF THE ANTITHROMBOTIC ANTIBODY 82D6A3 JRNL TITL 2 BASED ON THE CRYSTAL STRUCTURE OF ITS COMPLEX WITH THE VON JRNL TITL 3 WILLEBRAND FACTOR A3-DOMAIN JRNL REF J.BIOL.CHEM. V. 281 2225 2006 JRNL REFN ISSN 0021-9258 JRNL PMID 16314412 JRNL DOI 10.1074/JBC.M508191200 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0003 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : 5.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 60060 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3243 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 8662 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2210 REMARK 3 BIN FREE R VALUE SET COUNT : 446 REMARK 3 BIN FREE R VALUE : 0.2540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4703 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 442 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.134 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.125 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.084 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.415 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4831 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6577 ; 1.353 ; 1.945 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 613 ; 4.721 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 190 ;31.909 ;24.421 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 779 ;11.829 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;16.878 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 745 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3625 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2114 ; 0.194 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3275 ; 0.301 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 378 ; 0.119 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 63 ; 0.237 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 26 ; 0.205 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3162 ; 0.792 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4973 ; 1.020 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1939 ; 1.605 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1604 ; 2.425 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2ADF COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-JUL-05. REMARK 100 THE RCSB ID CODE IS RCSB033765. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9393 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60060 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 27.350 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 1ATZ, 2MPA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, AMMONIUM SULPHATE, ACETATE, REMARK 280 PH 4.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.08950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.75550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.53800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.75550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.08950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.53800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 916 REMARK 465 SER A 917 REMARK 465 HIS A 918 REMARK 465 MET A 919 REMARK 465 ALA A 920 REMARK 465 PRO A 921 REMARK 465 GLY A 1111 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASN L 209 C ASN L 209 OXT 0.253 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 979 CB - CG - OD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 LEU L 159 CA - CB - CG ANGL. DEV. = 15.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 937 45.84 -88.35 REMARK 500 LEU A 964 -133.92 -118.33 REMARK 500 ALA H 104 -138.06 64.19 REMARK 500 CYS H 133 25.03 48.71 REMARK 500 SER H 197 -77.45 -34.60 REMARK 500 ILE H 198 104.13 76.59 REMARK 500 THR L 51 -51.28 72.51 REMARK 500 LEU L 94 -150.28 56.11 REMARK 500 ASN L 189 -64.43 -107.04 REMARK 500 HIS L 197 -102.56 -163.77 REMARK 500 SER L 200 164.39 171.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 SER H 197 24.7 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 H 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 L 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 1112 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL H 1004 DBREF 2ADF A 920 1111 UNP P04275 VWF_HUMAN 1683 1874 DBREF 2ADF H 25 218 UNP P84751 HVM63_MOUSE 25 220 DBREF 2ADF L 5 209 UNP Q58EV6 Q58EV6_MOUSE 27 231 SEQADV 2ADF GLY A 916 UNP P04275 EXPRESSION TAG SEQADV 2ADF SER A 917 UNP P04275 EXPRESSION TAG SEQADV 2ADF HIS A 918 UNP P04275 EXPRESSION TAG SEQADV 2ADF MET A 919 UNP P04275 EXPRESSION TAG SEQRES 1 A 196 GLY SER HIS MET ALA PRO ASP CYS SER GLN PRO LEU ASP SEQRES 2 A 196 VAL ILE LEU LEU LEU ASP GLY SER SER SER PHE PRO ALA SEQRES 3 A 196 SER TYR PHE ASP GLU MET LYS SER PHE ALA LYS ALA PHE SEQRES 4 A 196 ILE SER LYS ALA ASN ILE GLY PRO ARG LEU THR GLN VAL SEQRES 5 A 196 SER VAL LEU GLN TYR GLY SER ILE THR THR ILE ASP VAL SEQRES 6 A 196 PRO TRP ASN VAL VAL PRO GLU LYS ALA HIS LEU LEU SER SEQRES 7 A 196 LEU VAL ASP VAL MET GLN ARG GLU GLY GLY PRO SER GLN SEQRES 8 A 196 ILE GLY ASP ALA LEU GLY PHE ALA VAL ARG TYR LEU THR SEQRES 9 A 196 SER GLU MET HIS GLY ALA ARG PRO GLY ALA SER LYS ALA SEQRES 10 A 196 VAL VAL ILE LEU VAL THR ASP VAL SER VAL ASP SER VAL SEQRES 11 A 196 ASP ALA ALA ALA ASP ALA ALA ARG SER ASN ARG VAL THR SEQRES 12 A 196 VAL PHE PRO ILE GLY ILE GLY ASP ARG TYR ASP ALA ALA SEQRES 13 A 196 GLN LEU ARG ILE LEU ALA GLY PRO ALA GLY ASP SER ASN SEQRES 14 A 196 VAL VAL LYS LEU GLN ARG ILE GLU ASP LEU PRO THR MET SEQRES 15 A 196 VAL THR LEU GLY ASN SER PHE LEU HIS LYS LEU CYS SER SEQRES 16 A 196 GLY SEQRES 1 H 218 GLN ILE GLN LEU VAL GLN SER GLY PRO GLU LEU LYS LYS SEQRES 2 H 218 PRO GLY GLU THR VAL LYS ILE SER CYS LYS ALA SER GLY SEQRES 3 H 218 TYR THR PHE ILE ASN TYR GLY MET ASN TRP VAL LYS GLN SEQRES 4 H 218 ALA PRO GLY LYS GLY LEU LYS TRP MET GLY TRP LYS ASN SEQRES 5 H 218 THR ASN THR GLY GLU THR THR TYR GLY GLU GLU PHE ARG SEQRES 6 H 218 GLY ARG PHE ALA PHE SER LEU GLU THR SER VAL SER THR SEQRES 7 H 218 ALA TYR LEU GLN ILE ASN ASN LEU LYS ASN GLU ASP THR SEQRES 8 H 218 ALA THR TYR PHE CYS ALA ARG ASP ASN PRO TYR TYR ALA SEQRES 9 H 218 LEU ASP TYR TRP GLY GLN GLY THR THR VAL THR VAL SER SEQRES 10 H 218 SER ALA LYS THR THR ALA PRO SER VAL TYR PRO LEU ALA SEQRES 11 H 218 PRO VAL CYS GLY ASP THR THR GLY SER SER VAL THR LEU SEQRES 12 H 218 GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL THR SEQRES 13 H 218 LEU THR TRP ASN SER GLY SER LEU SER SER GLY VAL HIS SEQRES 14 H 218 THR PHE PRO ALA VAL LEU GLN SER ASP LEU TYR THR LEU SEQRES 15 H 218 SER SER SER VAL THR VAL THR SER SER THR TRP PRO SER SEQRES 16 H 218 GLN SER ILE THR CYS ASN VAL ALA HIS PRO ALA SER SER SEQRES 17 H 218 THR LYS VAL ASP LYS LYS ILE GLU PRO ARG SEQRES 1 L 209 ASP ILE GLN MET THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 L 209 SER LEU GLY GLY LYS VAL THR ILE THR CYS LYS ALA SER SEQRES 3 L 209 GLN ASP ILE ASN LYS TYR ILE ALA TRP TYR GLN HIS LYS SEQRES 4 L 209 PRO GLY LYS GLY PRO ARG LEU LEU ILE HIS TYR THR SER SEQRES 5 L 209 THR LEU GLN PRO GLY ILE PRO SER ARG PHE SER GLY SER SEQRES 6 L 209 GLY SER GLY ARG ASP TYR SER PHE SER ILE SER ASN LEU SEQRES 7 L 209 GLU PRO GLU ASP ILE ALA THR TYR TYR CYS LEU GLN TYR SEQRES 8 L 209 ASP ASN LEU ARG THR PHE GLY GLY GLY THR LYS LEU GLU SEQRES 9 L 209 ILE LYS ARG ALA ASP ALA ALA PRO THR VAL SER ILE PHE SEQRES 10 L 209 PRO PRO SER SER GLU GLN LEU THR SER GLY GLY ALA SER SEQRES 11 L 209 VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS ASP ILE SEQRES 12 L 209 ASN VAL LYS TRP LYS ILE ASP GLY SER GLU ARG GLN ASN SEQRES 13 L 209 GLY VAL LEU ASN SER TRP THR ASP GLN ASP SER LYS ASP SEQRES 14 L 209 SER THR TYR SER MET SER SER THR LEU THR LEU THR LYS SEQRES 15 L 209 ASP GLU TYR GLU ARG HIS ASN SER TYR THR CYS GLU ALA SEQRES 16 L 209 THR HIS LYS THR SER THR SER PRO ILE VAL LYS SER PHE SEQRES 17 L 209 ASN HET SO4 H1002 5 HET SO4 L1003 5 HET ACY A1112 4 HET GOL H1004 6 HETNAM SO4 SULFATE ION HETNAM ACY ACETIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 SO4 2(O4 S 2-) FORMUL 6 ACY C2 H4 O2 FORMUL 7 GOL C3 H8 O3 FORMUL 8 HOH *442(H2 O) HELIX 1 1 PRO A 940 ALA A 958 1 19 HELIX 2 2 GLU A 987 VAL A 997 1 11 HELIX 3 3 GLN A 1006 SER A 1020 1 15 HELIX 4 4 GLU A 1021 GLY A 1024 5 4 HELIX 5 5 VAL A 1045 ASN A 1055 1 11 HELIX 6 6 ASP A 1069 ALA A 1077 1 9 HELIX 7 7 GLY A 1078 VAL A 1085 5 8 HELIX 8 8 GLU A 1092 LEU A 1100 1 9 HELIX 9 9 ASN A 1102 SER A 1110 1 9 HELIX 10 10 THR H 28 TYR H 32 5 5 HELIX 11 11 GLU H 62 ARG H 65 5 4 HELIX 12 12 THR H 74 VAL H 76 5 3 HELIX 13 13 LYS H 87 THR H 91 5 5 HELIX 14 14 SER H 161 SER H 163 5 3 HELIX 15 15 PRO H 205 SER H 208 5 4 HELIX 16 16 GLU L 79 ILE L 83 5 5 HELIX 17 17 SER L 120 GLY L 127 1 8 HELIX 18 18 LYS L 182 GLU L 186 1 5 SHEET 1 A 6 THR A 976 VAL A 980 0 SHEET 2 A 6 THR A 965 TYR A 972 -1 N GLN A 971 O THR A 977 SHEET 3 A 6 LEU A 927 ASP A 934 1 N VAL A 929 O GLN A 966 SHEET 4 A 6 SER A1030 VAL A1037 1 O SER A1030 N ASP A 928 SHEET 5 A 6 VAL A1057 ILE A1064 1 O PHE A1060 N VAL A1033 SHEET 6 A 6 VAL A1086 LEU A1088 1 O LEU A1088 N GLY A1063 SHEET 1 B 4 GLN H 3 GLN H 6 0 SHEET 2 B 4 VAL H 18 SER H 25 -1 O LYS H 23 N VAL H 5 SHEET 3 B 4 THR H 78 ILE H 83 -1 O LEU H 81 N ILE H 20 SHEET 4 B 4 PHE H 68 GLU H 73 -1 N GLU H 73 O THR H 78 SHEET 1 C 6 GLU H 10 LYS H 12 0 SHEET 2 C 6 THR H 112 VAL H 116 1 O THR H 115 N LYS H 12 SHEET 3 C 6 ALA H 92 ASN H 100 -1 N ALA H 92 O VAL H 114 SHEET 4 C 6 MET H 34 GLN H 39 -1 N ASN H 35 O ALA H 97 SHEET 5 C 6 LYS H 46 LYS H 51 -1 O LYS H 46 N LYS H 38 SHEET 6 C 6 THR H 58 TYR H 60 -1 O THR H 59 N TRP H 50 SHEET 1 D 4 GLU H 10 LYS H 12 0 SHEET 2 D 4 THR H 112 VAL H 116 1 O THR H 115 N LYS H 12 SHEET 3 D 4 ALA H 92 ASN H 100 -1 N ALA H 92 O VAL H 114 SHEET 4 D 4 ALA H 104 TRP H 108 -1 O TYR H 107 N ARG H 98 SHEET 1 E 4 SER H 125 LEU H 129 0 SHEET 2 E 4 VAL H 141 TYR H 150 -1 O LEU H 146 N TYR H 127 SHEET 3 E 4 LEU H 179 VAL H 188 -1 O VAL H 188 N VAL H 141 SHEET 4 E 4 VAL H 168 GLN H 176 -1 N HIS H 169 O SER H 185 SHEET 1 F 3 THR H 156 TRP H 159 0 SHEET 2 F 3 THR H 199 HIS H 204 -1 O ASN H 201 N THR H 158 SHEET 3 F 3 THR H 209 LYS H 214 -1 O VAL H 211 N VAL H 202 SHEET 1 G 4 MET L 4 SER L 7 0 SHEET 2 G 4 VAL L 19 ALA L 25 -1 O LYS L 24 N THR L 5 SHEET 3 G 4 ASP L 70 ILE L 75 -1 O PHE L 73 N ILE L 21 SHEET 4 G 4 PHE L 62 SER L 67 -1 N SER L 65 O SER L 72 SHEET 1 H 6 SER L 10 ALA L 13 0 SHEET 2 H 6 THR L 101 ILE L 105 1 O LYS L 102 N LEU L 11 SHEET 3 H 6 ALA L 84 GLN L 90 -1 N ALA L 84 O LEU L 103 SHEET 4 H 6 ILE L 33 HIS L 38 -1 N TYR L 36 O TYR L 87 SHEET 5 H 6 ARG L 45 HIS L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 H 6 THR L 53 LEU L 54 -1 O THR L 53 N HIS L 49 SHEET 1 I 4 SER L 10 ALA L 13 0 SHEET 2 I 4 THR L 101 ILE L 105 1 O LYS L 102 N LEU L 11 SHEET 3 I 4 ALA L 84 GLN L 90 -1 N ALA L 84 O LEU L 103 SHEET 4 I 4 THR L 96 PHE L 97 -1 O THR L 96 N GLN L 90 SHEET 1 J 4 THR L 113 PHE L 117 0 SHEET 2 J 4 GLY L 128 PHE L 138 -1 O VAL L 132 N PHE L 117 SHEET 3 J 4 TYR L 172 THR L 181 -1 O MET L 174 N LEU L 135 SHEET 4 J 4 VAL L 158 TRP L 162 -1 N LEU L 159 O THR L 177 SHEET 1 K 4 SER L 152 ARG L 154 0 SHEET 2 K 4 ASN L 144 ILE L 149 -1 N ILE L 149 O SER L 152 SHEET 3 K 4 TYR L 191 THR L 196 -1 O THR L 196 N ASN L 144 SHEET 4 K 4 ILE L 204 PHE L 208 -1 O ILE L 204 N ALA L 195 SSBOND 1 CYS A 923 CYS A 1109 1555 1555 2.04 SSBOND 2 CYS H 22 CYS H 96 1555 1555 2.05 SSBOND 3 CYS H 145 CYS H 200 1555 1555 2.03 SSBOND 4 CYS L 23 CYS L 88 1555 1555 2.03 SSBOND 5 CYS L 133 CYS L 193 1555 1555 2.03 CISPEP 1 PHE H 151 PRO H 152 0 -6.55 CISPEP 2 GLU H 153 PRO H 154 0 0.92 CISPEP 3 TRP H 193 PRO H 194 0 1.80 CISPEP 4 SER L 7 PRO L 8 0 -3.45 CISPEP 5 TYR L 139 PRO L 140 0 0.93 SITE 1 AC1 6 GLN A1089 ARG A1090 LYS H 51 SER H 71 SITE 2 AC1 6 LEU H 72 SER H 191 SITE 1 AC2 8 PRO H 14 ASN H 88 SER H 118 GLN L 27 SITE 2 AC2 8 ASP L 28 HOH L1079 HOH L1089 HOH L1138 SITE 1 AC3 5 PHE A1060 PHE A1104 LYS A1107 HOH A1121 SITE 2 AC3 5 HOH A1223 SITE 1 AC4 5 THR H 93 GLN H 110 GLY H 111 HOH H1066 SITE 2 AC4 5 HOH H1147 CRYST1 72.179 89.076 123.511 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013854 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011226 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008096 0.00000