PDB Short entry for 2AGQ
HEADER    TRANSFERASE/DNA                         27-JUL-05   2AGQ              
TITLE     FIDELITY OF DPO4: EFFECT OF METAL IONS, NUCLEOTIDE SELECTION AND      
TITLE    2 PYROPHOSPHOROLYSIS                                                   
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: 5'-D(*GP*GP*CP*TP*AP*CP*AP*GP*GP*AP*CP*TP*(DOC))-3';       
COMPND   3 CHAIN: B;                                                            
COMPND   4 ENGINEERED: YES;                                                     
COMPND   5 MOL_ID: 2;                                                           
COMPND   6 MOLECULE: 5'-D(*TP*CP*AP*TP*GP*AP*GP*TP*CP*CP*TP*GP*TP*AP*GP*CP*C)-  
COMPND   7 3';                                                                  
COMPND   8 CHAIN: C;                                                            
COMPND   9 ENGINEERED: YES;                                                     
COMPND  10 MOL_ID: 3;                                                           
COMPND  11 MOLECULE: DNA POLYMERASE IV;                                         
COMPND  12 CHAIN: A;                                                            
COMPND  13 SYNONYM: POL IV;                                                     
COMPND  14 EC: 2.7.7.7;                                                         
COMPND  15 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 SYNTHETIC: YES;                                                      
SOURCE   3 OTHER_DETAILS: CHEMICALLY SYNTHESIZED;                               
SOURCE   4 MOL_ID: 2;                                                           
SOURCE   5 SYNTHETIC: YES;                                                      
SOURCE   6 OTHER_DETAILS: CHEMICALLY SYNTHESIZED;                               
SOURCE   7 MOL_ID: 3;                                                           
SOURCE   8 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS;                        
SOURCE   9 ORGANISM_TAXID: 2287;                                                
SOURCE  10 GENE: DBH, DPO4;                                                     
SOURCE  11 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);                       
SOURCE  12 EXPRESSION_SYSTEM_TAXID: 469008;                                     
SOURCE  13 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3);                                
SOURCE  14 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE  15 EXPRESSION_SYSTEM_PLASMID: PET22B                                    
KEYWDS    BASE STACKING, FIDELITY, METAL ION, MISMATCH, PYROPHOSPHOROLYSIS,     
KEYWDS   2 TRANSFERASE-DNA COMPLEX                                              
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    H.LING,W.YANG                                                         
REVDAT   4   11-OCT-17 2AGQ    1       REMARK                                   
REVDAT   3   24-FEB-09 2AGQ    1       VERSN                                    
REVDAT   2   20-SEP-05 2AGQ    1       JRNL                                     
REVDAT   1   06-SEP-05 2AGQ    0                                                
JRNL        AUTH   A.VAISMAN,H.LING,R.WOODGATE,W.YANG                           
JRNL        TITL   FIDELITY OF DPO4: EFFECT OF METAL IONS, NUCLEOTIDE SELECTION 
JRNL        TITL 2 AND PYROPHOSPHOROLYSIS.                                      
JRNL        REF    EMBO J.                       V.  24  2957 2005              
JRNL        REFN                   ISSN 0261-4189                               
JRNL        PMID   16107880                                                     
JRNL        DOI    10.1038/SJ.EMBOJ.7600786                                     
REMARK   2                                                                      
REMARK   2 RESOLUTION.    2.10 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : CNS 1.1                                              
REMARK   3   AUTHORS     : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-              
REMARK   3               : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,              
REMARK   3               : READ,RICE,SIMONSON,WARREN                            
REMARK   3                                                                      
REMARK   3  REFINEMENT TARGET : ENGH & HUBER                                    
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 26.79                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : 0.000                          
REMARK   3   DATA CUTOFF HIGH         (ABS(F)) : 817311.240                     
REMARK   3   DATA CUTOFF LOW          (ABS(F)) : 0.0000                         
REMARK   3   COMPLETENESS (WORKING+TEST)   (%) : 91.6                           
REMARK   3   NUMBER OF REFLECTIONS             : 30510                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : THROUGHOUT                      
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                          
REMARK   3   R VALUE            (WORKING SET) : 0.227                           
REMARK   3   FREE R VALUE                     : 0.254                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 4.900                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 1438                            
REMARK   3   ESTIMATED ERROR OF FREE R VALUE  : 0.007                           
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : 6                            
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : 2.10                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : 2.23                         
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : 81.80                        
REMARK   3   REFLECTIONS IN BIN    (WORKING SET) : 4056                         
REMARK   3   BIN R VALUE           (WORKING SET) : 0.3240                       
REMARK   3   BIN FREE R VALUE                    : 0.3820                       
REMARK   3   BIN FREE R VALUE TEST SET SIZE  (%) : 4.40                         
REMARK   3   BIN FREE R VALUE TEST SET COUNT     : 188                          
REMARK   3   ESTIMATED ERROR OF BIN FREE R VALUE : 0.028                        
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 2744                                    
REMARK   3   NUCLEIC ACID ATOMS       : 606                                     
REMARK   3   HETEROGEN ATOMS          : 33                                      
REMARK   3   SOLVENT ATOMS            : 160                                     
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : 29.50                          
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 45.10                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : 9.93000                                              
REMARK   3    B22 (A**2) : -4.44000                                             
REMARK   3    B33 (A**2) : -5.49000                                             
REMARK   3    B12 (A**2) : 0.00000                                              
REMARK   3    B13 (A**2) : 0.00000                                              
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  ESTIMATED COORDINATE ERROR.                                         
REMARK   3   ESD FROM LUZZATI PLOT        (A) : 0.31                            
REMARK   3   ESD FROM SIGMAA              (A) : 0.33                            
REMARK   3   LOW RESOLUTION CUTOFF        (A) : 5.00                            
REMARK   3                                                                      
REMARK   3  CROSS-VALIDATED ESTIMATED COORDINATE ERROR.                         
REMARK   3   ESD FROM C-V LUZZATI PLOT    (A) : 0.36                            
REMARK   3   ESD FROM C-V SIGMAA          (A) : 0.40                            
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES.                                   
REMARK   3   BOND LENGTHS                 (A) : 0.007                           
REMARK   3   BOND ANGLES            (DEGREES) : 1.200                           
REMARK   3   DIHEDRAL ANGLES        (DEGREES) : 20.90                           
REMARK   3   IMPROPER ANGLES        (DEGREES) : 0.940                           
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL MODEL : RESTRAINED                                
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.    RMS    SIGMA                
REMARK   3   MAIN-CHAIN BOND              (A**2) : 1.370 ; 1.500                
REMARK   3   MAIN-CHAIN ANGLE             (A**2) : 2.230 ; 2.000                
REMARK   3   SIDE-CHAIN BOND              (A**2) : 2.090 ; 2.000                
REMARK   3   SIDE-CHAIN ANGLE             (A**2) : 3.200 ; 2.500                
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELING.                                              
REMARK   3   METHOD USED : FLAT MODEL                                           
REMARK   3   KSOL        : 0.37                                                 
REMARK   3   BSOL        : 48.69                                                
REMARK   3                                                                      
REMARK   3  NCS MODEL : NULL                                                    
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS.                         RMS   SIGMA/WEIGHT          
REMARK   3   GROUP  1  POSITIONAL            (A) : NULL  ; NULL                 
REMARK   3   GROUP  1  B-FACTOR           (A**2) : NULL  ; NULL                 
REMARK   3                                                                      
REMARK   3  PARAMETER FILE  1  : PROTEIN_REP.PARAM                              
REMARK   3  PARAMETER FILE  2  : DNA-RNA_REP.PARAM                              
REMARK   3  PARAMETER FILE  3  : ION.PARAM                                      
REMARK   3  PARAMETER FILE  4  : DATP.PARAM                                     
REMARK   3  PARAMETER FILE  5  : WATER_REP.PARAM                                
REMARK   3  PARAMETER FILE  6  : NULL                                           
REMARK   3  TOPOLOGY FILE  1   : PROTEIN.TOP                                    
REMARK   3  TOPOLOGY FILE  2   : DNA-RNA.TOP                                    
REMARK   3  TOPOLOGY FILE  3   : ION.TOP                                        
REMARK   3  TOPOLOGY FILE  4   : DATP.TOP                                       
REMARK   3  TOPOLOGY FILE  5   : WATER.TOP                                      
REMARK   3  TOPOLOGY FILE  6   : NULL                                           
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 2AGQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-AUG-05.                  
REMARK 100 THE DEPOSITION ID IS D_1000033873.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 29-DEC-04                          
REMARK 200  TEMPERATURE           (KELVIN) : 95                                 
REMARK 200  PH                             : 7.0                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : N                                  
REMARK 200  RADIATION SOURCE               : ROTATING ANODE                     
REMARK 200  BEAMLINE                       : NULL                               
REMARK 200  X-RAY GENERATOR MODEL          : RIGAKU RU200                       
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 1.5418                             
REMARK 200  MONOCHROMATOR                  : OSMIC FOCUSING MIRROR              
REMARK 200  OPTICS                         : MIRROR                             
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : IMAGE PLATE                        
REMARK 200  DETECTOR MANUFACTURER          : RIGAKU RAXIS IV                    
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : DENZO                              
REMARK 200  DATA SCALING SOFTWARE          : SCALEPACK                          
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 30510                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 2.100                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 30.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : NULL                               
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 95.1                               
REMARK 200  DATA REDUNDANCY                : 2.440                              
REMARK 200  R MERGE                    (I) : 0.06000                            
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 13.9000                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 2.14                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 87.6                               
REMARK 200  DATA REDUNDANCY IN SHELL       : 2.30                               
REMARK 200  R MERGE FOR SHELL          (I) : 0.40600                            
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 1.490                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: CNS                                                   
REMARK 200 STARTING MODEL: PDB ENTRY 1JX4                                       
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 55.25                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.0                                   
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2                        
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X,-Y,Z                                                 
REMARK 290       3555   -X+1/2,Y+1/2,-Z                                         
REMARK 290       4555   X+1/2,-Y+1/2,-Z                                         
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   3 -1.000000  0.000000  0.000000       49.05050            
REMARK 290   SMTRY2   3  0.000000  1.000000  0.000000       51.50450            
REMARK 290   SMTRY3   3  0.000000  0.000000 -1.000000        0.00000            
REMARK 290   SMTRY1   4  1.000000  0.000000  0.000000       49.05050            
REMARK 290   SMTRY2   4  0.000000 -1.000000  0.000000       51.50450            
REMARK 290   SMTRY3   4  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC                          
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, A                               
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT                     
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500   O4'   DA B     5     O    HOH B    19              2.19            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    TYR A  10       53.58     21.30                                   
REMARK 500    SER A  96      139.92   -179.53                                   
REMARK 500    SER A 103     -169.87   -171.20                                   
REMARK 500    ARG A 256       30.74   -146.24                                   
REMARK 500    ASP A 277       82.77     31.78                                   
REMARK 500    LYS A 278      -23.36     84.14                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                             
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              CA A4001  CA                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 PHE A   8   O                                                      
REMARK 620 2 ASP A 105   OD2  89.4                                              
REMARK 620 3 DTP A1814   O1G  96.3 174.2                                        
REMARK 620 4 DTP A1814   O2B  89.3  85.9  93.0                                  
REMARK 620 5 DTP A1814   O3B 104.4 131.8  45.4  49.3                            
REMARK 620 6 DTP A1814   O1A 166.3  89.0  85.2  77.1  67.1                      
REMARK 620 7 ASP A   7   OD1  83.4  86.3  95.5 169.3 140.3 110.1                
REMARK 620 N                    1     2     3     4     5     6                 
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              MG A4002  MG                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 HOH A4004   O                                                      
REMARK 620 2 HOH A4032   O   162.2                                              
REMARK 620 3 ASP A   7   OD2  83.1  79.6                                        
REMARK 620 4 DOC B  13   OP1 123.3  74.4 152.8                                  
REMARK 620 5 HOH A4100   O    77.1 108.1  93.7  86.8                            
REMARK 620 6 GLU A 106   OE2  93.5  85.4 100.0  86.0 162.4                      
REMARK 620 N                    1     2     3     4     5                       
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                              CA A4003  CA                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 HOH B  28   O                                                      
REMARK 620 2 ILE A 186   O    79.0                                              
REMARK 620 3 ALA A 181   O   171.3  93.5                                        
REMARK 620 N                    1     2                                         
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 4001                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 4002                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC3                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 4003                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC4                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DTP A 1814                
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 1JX4   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 1JXL   RELATED DB: PDB                                   
DBREF  2AGQ A    1   341  UNP    Q97W02   DPO42_SULSO      1    341             
DBREF  2AGQ B    1    13  PDB    2AGQ     2AGQ             1     13             
DBREF  2AGQ C    1    17  PDB    2AGQ     2AGQ             1     17             
SEQRES   1 B   13   DG  DG  DC  DT  DA  DC  DA  DG  DG  DA  DC  DT DOC          
SEQRES   1 C   17   DT  DC  DA  DT  DG  DA  DG  DT  DC  DC  DT  DG  DT          
SEQRES   2 C   17   DA  DG  DC  DC                                              
SEQRES   1 A  341  MET ILE VAL LEU PHE VAL ASP PHE ASP TYR PHE TYR ALA          
SEQRES   2 A  341  GLN VAL GLU GLU VAL LEU ASN PRO SER LEU LYS GLY LYS          
SEQRES   3 A  341  PRO VAL VAL VAL CYS VAL PHE SER GLY ARG PHE GLU ASP          
SEQRES   4 A  341  SER GLY ALA VAL ALA THR ALA ASN TYR GLU ALA ARG LYS          
SEQRES   5 A  341  PHE GLY VAL LYS ALA GLY ILE PRO ILE VAL GLU ALA LYS          
SEQRES   6 A  341  LYS ILE LEU PRO ASN ALA VAL TYR LEU PRO MET ARG LYS          
SEQRES   7 A  341  GLU VAL TYR GLN GLN VAL SER SER ARG ILE MET ASN LEU          
SEQRES   8 A  341  LEU ARG GLU TYR SER GLU LYS ILE GLU ILE ALA SER ILE          
SEQRES   9 A  341  ASP GLU ALA TYR LEU ASP ILE SER ASP LYS VAL ARG ASP          
SEQRES  10 A  341  TYR ARG GLU ALA TYR ASN LEU GLY LEU GLU ILE LYS ASN          
SEQRES  11 A  341  LYS ILE LEU GLU LYS GLU LYS ILE THR VAL THR VAL GLY          
SEQRES  12 A  341  ILE SER LYS ASN LYS VAL PHE ALA LYS ILE ALA ALA ASP          
SEQRES  13 A  341  MET ALA LYS PRO ASN GLY ILE LYS VAL ILE ASP ASP GLU          
SEQRES  14 A  341  GLU VAL LYS ARG LEU ILE ARG GLU LEU ASP ILE ALA ASP          
SEQRES  15 A  341  VAL PRO GLY ILE GLY ASN ILE THR ALA GLU LYS LEU LYS          
SEQRES  16 A  341  LYS LEU GLY ILE ASN LYS LEU VAL ASP THR LEU SER ILE          
SEQRES  17 A  341  GLU PHE ASP LYS LEU LYS GLY MET ILE GLY GLU ALA LYS          
SEQRES  18 A  341  ALA LYS TYR LEU ILE SER LEU ALA ARG ASP GLU TYR ASN          
SEQRES  19 A  341  GLU PRO ILE ARG THR ARG VAL ARG LYS SER ILE GLY ARG          
SEQRES  20 A  341  ILE VAL THR MET LYS ARG ASN SER ARG ASN LEU GLU GLU          
SEQRES  21 A  341  ILE LYS PRO TYR LEU PHE ARG ALA ILE GLU GLU SER TYR          
SEQRES  22 A  341  TYR LYS LEU ASP LYS ARG ILE PRO LYS ALA ILE HIS VAL          
SEQRES  23 A  341  VAL ALA VAL THR GLU ASP LEU ASP ILE VAL SER ARG GLY          
SEQRES  24 A  341  ARG THR PHE PRO HIS GLY ILE SER LYS GLU THR ALA TYR          
SEQRES  25 A  341  SER GLU SER VAL LYS LEU LEU GLN LYS ILE LEU GLU GLU          
SEQRES  26 A  341  ASP GLU ARG LYS ILE ARG ARG ILE GLY VAL ARG PHE SER          
SEQRES  27 A  341  LYS PHE ILE                                                  
MODRES 2AGQ DOC B   13   DC  2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE             
HET    DOC  B  13      18                                                       
HET     CA  A4001       1                                                       
HET     MG  A4002       1                                                       
HET     CA  A4003       1                                                       
HET    DTP  A1814      30                                                       
HETNAM     DOC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE                           
HETNAM      CA CALCIUM ION                                                      
HETNAM      MG MAGNESIUM ION                                                    
HETNAM     DTP 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE                                
FORMUL   1  DOC    C9 H14 N3 O6 P                                               
FORMUL   4   CA    2(CA 2+)                                                     
FORMUL   5   MG    MG 2+                                                        
FORMUL   7  DTP    C10 H16 N5 O12 P3                                            
FORMUL   8  HOH   *160(H2 O)                                                    
HELIX    1   1 TYR A   10  ASN A   20  1                                  11    
HELIX    2   2 PRO A   21  LYS A   24  5                                   4    
HELIX    3   3 ASN A   47  LYS A   52  1                                   6    
HELIX    4   4 PRO A   60  LEU A   68  1                                   9    
HELIX    5   5 ARG A   77  GLU A   94  1                                  18    
HELIX    6   6 ASP A  117  LYS A  137  1                                  21    
HELIX    7   7 ASN A  147  LYS A  159  1                                  13    
HELIX    8   8 ASP A  167  LEU A  178  1                                  12    
HELIX    9   9 ASP A  179  VAL A  183  5                                   5    
HELIX   10  10 GLY A  187  LYS A  196  1                                  10    
HELIX   11  11 LYS A  201  SER A  207  5                                   7    
HELIX   12  12 GLU A  209  GLY A  218  1                                  10    
HELIX   13  13 GLY A  218  ARG A  230  1                                  13    
HELIX   14  14 ASN A  257  ASP A  277  1                                  21    
HELIX   15  15 SER A  307  ASP A  326  1                                  20    
SHEET    1   A 5 ILE A  99  SER A 103  0                                        
SHEET    2   A 5 GLU A 106  ASP A 110 -1  O  TYR A 108   N  GLU A 100           
SHEET    3   A 5 VAL A   3  PHE A   8 -1  N  VAL A   6   O  ALA A 107           
SHEET    4   A 5 VAL A 140  SER A 145 -1  O  GLY A 143   N  PHE A   5           
SHEET    5   A 5 ILE A 163  VAL A 165  1  O  LYS A 164   N  ILE A 144           
SHEET    1   B 3 GLY A  41  ALA A  46  0                                        
SHEET    2   B 3 VAL A  28  PHE A  33 -1  N  VAL A  32   O  ALA A  42           
SHEET    3   B 3 VAL A  72  PRO A  75  1  O  LEU A  74   N  CYS A  31           
SHEET    1   C 4 SER A 244  SER A 255  0                                        
SHEET    2   C 4 ILE A 330  PHE A 340 -1  O  PHE A 337   N  ILE A 245           
SHEET    3   C 4 PRO A 281  THR A 290 -1  N  VAL A 289   O  ARG A 331           
SHEET    4   C 4 ILE A 295  THR A 301 -1  O  ARG A 298   N  VAL A 286           
LINK        CA    CA A4001                 O   PHE A   8     1555   1555  2.31  
LINK        CA    CA A4001                 OD2 ASP A 105     1555   1555  2.16  
LINK        CA    CA A4001                 O1G DTP A1814     1555   1555  2.66  
LINK        CA    CA A4001                 O2B DTP A1814     1555   1555  2.56  
LINK        CA    CA A4001                 O3B DTP A1814     1555   1555  2.84  
LINK        CA    CA A4001                 O1A DTP A1814     1555   1555  2.29  
LINK        CA    CA A4001                 OD1 ASP A   7     1555   1555  2.23  
LINK        MG    MG A4002                 O   HOH A4004     1555   1555  2.31  
LINK        MG    MG A4002                 O   HOH A4032     1555   1555  2.08  
LINK        MG    MG A4002                 OD2 ASP A   7     1555   1555  2.44  
LINK        MG    MG A4002                 OP1 DOC B  13     1555   1555  2.64  
LINK        MG    MG A4002                 O   HOH A4100     1555   1555  2.16  
LINK        MG    MG A4002                 OE2 GLU A 106     1555   1555  2.10  
LINK        CA    CA A4003                 O   HOH B  28     1555   1555  2.59  
LINK        CA    CA A4003                 O   ILE A 186     1555   1555  2.51  
LINK        CA    CA A4003                 O   ALA A 181     1555   1555  2.31  
LINK         O3'  DT B  12                 P   DOC B  13     1555   1555  1.61  
CISPEP   1 LYS A  159    PRO A  160          0         0.18                     
SITE     1 AC1  4 ASP A   7  PHE A   8  ASP A 105  DTP A1814                    
SITE     1 AC2  6 ASP A   7  GLU A 106  HOH A4004  HOH A4032                    
SITE     2 AC2  6 HOH A4100  DOC B  13                                          
SITE     1 AC3  3 ALA A 181  ILE A 186  HOH B  28                               
SITE     1 AC4 21 ASP A   7  PHE A   8  ASP A   9  TYR A  10                    
SITE     2 AC4 21 PHE A  11  TYR A  12  ALA A  44  THR A  45                    
SITE     3 AC4 21 TYR A  48  ARG A  51  ASP A 105  LYS A 159                    
SITE     4 AC4 21  CA A4001  HOH A4004  HOH A4007  HOH A4030                    
SITE     5 AC4 21 HOH A4039  HOH A4100  DOC B  13   DT C   4                    
SITE     6 AC4 21  DG C   5                                                     
CRYST1   98.101  103.009   52.399  90.00  90.00  90.00 P 21 21 2     4          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.010194  0.000000  0.000000        0.00000                         
SCALE2      0.000000  0.009708  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.019084        0.00000