PDB Short entry for 2AKM HEADER LYASE 03-AUG-05 2AKM TITLE FLUORIDE INHIBITION OF ENOLASE: CRYSTAL STRUCTURE OF THE INHIBITORY TITLE 2 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: GAMMA ENOLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 2-PHOSPHO-D-GLYCERATE HYDRO-LYASE; NEURAL ENOLASE; NEURON- COMPND 5 SPECIFIC ENOLASE; NSE; ENOLASE 2; COMPND 6 EC: 4.2.1.11; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: INHIBITORY COMPLEX SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ENO2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS ENOLASE; FLUORIDE INHIBITION; NEGATIVE COOPERATIVITY; GLYCOLYSIS; KEYWDS 2 CRYSTAL STRUCTURE; ISOTHERMAL TITRATION CALORIMETRY, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR J.QIN,G.CHAI,J.M.BREWER,L.L.LOVELACE REVDAT 3 23-AUG-23 2AKM 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 2AKM 1 VERSN REVDAT 1 21-MAR-06 2AKM 0 JRNL AUTH J.QIN,G.CHAI,J.M.BREWER,L.L.LOVELACE,L.LEBIODA JRNL TITL FLUORIDE INHIBITION OF ENOLASE: CRYSTAL STRUCTURE AND JRNL TITL 2 THERMODYNAMICS JRNL REF BIOCHEMISTRY V. 45 793 2006 JRNL REFN ISSN 0006-2960 JRNL PMID 16411755 JRNL DOI 10.1021/BI051558S REMARK 2 REMARK 2 RESOLUTION. 1.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 74.7 REMARK 3 NUMBER OF REFLECTIONS : 52790 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2159 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6550 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 377 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -22.90400 REMARK 3 B22 (A**2) : 14.11700 REMARK 3 B33 (A**2) : 8.78600 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.755 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.595 ; 2.500 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.987 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.843 ; 3.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2AKM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-AUG-05. REMARK 100 THE DEPOSITION ID IS D_1000034005. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUN-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56605 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.920 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.99 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.43200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 1TE6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG4000, MGCL2, TRIS, PH 8.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 55.86950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 59.84600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 55.86950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 59.84600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 434 REMARK 465 HIS A 435 REMARK 465 HIS A 436 REMARK 465 HIS A 437 REMARK 465 HIS A 438 REMARK 465 HIS A 439 REMARK 465 LEU B 433 REMARK 465 HIS B 434 REMARK 465 HIS B 435 REMARK 465 HIS B 436 REMARK 465 HIS B 437 REMARK 465 HIS B 438 REMARK 465 HIS B 439 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 53 CD CE NZ REMARK 470 GLU A 95 CG CD OE1 OE2 REMARK 470 GLU A 126 CD OE1 OE2 REMARK 470 LYS A 196 NZ REMARK 470 LYS A 201 CG CD CE NZ REMARK 470 GLU A 218 CD OE1 OE2 REMARK 470 LYS A 227 CD CE NZ REMARK 470 LYS A 238 NZ REMARK 470 ASP A 253 OD1 OD2 REMARK 470 LYS A 255 CE NZ REMARK 470 THR A 264 OG1 CG2 REMARK 470 GLN A 354 CG CD OE1 NE2 REMARK 470 LYS A 357 CE NZ REMARK 470 GLU A 419 CD OE1 OE2 REMARK 470 ARG A 421 NE CZ NH1 NH2 REMARK 470 GLU B 100 CD OE1 OE2 REMARK 470 GLU B 175 CG CD OE1 OE2 REMARK 470 ARG B 178 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 196 NZ REMARK 470 ASP B 202 CG OD1 OD2 REMARK 470 LYS B 238 CG CD CE NZ REMARK 470 SER B 262 OG REMARK 470 LYS B 305 CE NZ REMARK 470 LYS B 357 CE NZ REMARK 470 ASP B 418 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 342 O2 PO4 B 442 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 3 CD GLU A 3 OE2 0.079 REMARK 500 GLU B 3 CD GLU B 3 OE2 0.075 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 71 -55.80 -124.91 REMARK 500 VAL A 83 -9.39 -59.71 REMARK 500 SER A 140 -64.20 -127.61 REMARK 500 ASN A 160 174.28 177.53 REMARK 500 LEU A 162 121.66 -34.30 REMARK 500 MET A 164 151.07 -47.47 REMARK 500 ASP A 202 2.89 -62.99 REMARK 500 ALA A 213 78.28 -119.40 REMARK 500 LEU A 258 31.62 -83.33 REMARK 500 ASP A 259 51.04 -168.03 REMARK 500 THR A 264 130.29 -37.03 REMARK 500 ASP A 265 89.40 -156.49 REMARK 500 PRO A 287 48.61 -74.03 REMARK 500 ASP A 293 56.41 39.55 REMARK 500 ASP A 299 46.74 -96.93 REMARK 500 TRP A 300 -39.22 -39.97 REMARK 500 ASN A 309 -60.56 -93.55 REMARK 500 ASP A 317 -86.52 -126.41 REMARK 500 VAL A 321 49.76 33.04 REMARK 500 THR A 322 37.82 39.66 REMARK 500 PRO A 397 48.13 -73.15 REMARK 500 ARG A 399 122.28 81.40 REMARK 500 ALA B 38 -83.71 -86.94 REMARK 500 GLU B 44 170.49 -57.02 REMARK 500 LYS B 53 -7.46 -55.51 REMARK 500 ASN B 101 26.98 -141.34 REMARK 500 ASN B 160 -176.75 176.16 REMARK 500 ASN B 215 96.63 -65.80 REMARK 500 LYS B 255 -169.66 -123.77 REMARK 500 ASP B 259 30.11 -153.72 REMARK 500 LYS B 261 35.53 -99.35 REMARK 500 PRO B 263 111.02 -3.93 REMARK 500 THR B 264 120.63 -32.85 REMARK 500 PRO B 266 -3.22 -44.45 REMARK 500 PRO B 287 47.36 -78.31 REMARK 500 ASP B 299 53.83 -92.81 REMARK 500 ASP B 317 -83.18 -123.08 REMARK 500 VAL B 321 47.38 32.72 REMARK 500 PRO B 397 43.55 -82.19 REMARK 500 ARG B 399 116.57 79.77 REMARK 500 GLU B 419 32.19 -70.20 REMARK 500 HIS B 425 2.45 -69.18 REMARK 500 SER B 431 -18.89 -49.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 441 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 39 O REMARK 620 2 SER A 39 OG 82.4 REMARK 620 3 PO4 A 442 O1 84.4 83.4 REMARK 620 4 HOH A 461 O 164.3 89.5 108.1 REMARK 620 5 HOH A 464 O 85.3 85.9 166.0 80.7 REMARK 620 6 HOH A 465 O 69.1 149.8 84.1 120.5 100.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 440 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 244 OD1 REMARK 620 2 GLU A 292 OE1 87.0 REMARK 620 3 ASP A 317 OD1 154.6 85.5 REMARK 620 4 HOH A 461 O 82.8 167.0 100.3 REMARK 620 5 HOH A 462 O 104.9 111.8 100.4 78.8 REMARK 620 6 HOH A 463 O 68.8 103.9 89.6 64.8 143.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 440 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 244 OD1 REMARK 620 2 GLU B 292 OE1 66.8 REMARK 620 3 ASP B 317 OD1 151.1 91.6 REMARK 620 4 HOH B 444 O 99.4 163.5 97.8 REMARK 620 5 HOH B 445 O 62.2 90.3 100.8 74.7 REMARK 620 6 HOH B 446 O 80.3 94.7 122.2 91.6 136.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 440 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 441 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 442 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 440 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 442 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS A 460 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1TE6 RELATED DB: PDB REMARK 900 THE SAME NATIVE ENZYME REMARK 900 RELATED ID: 2AKZ RELATED DB: PDB REMARK 900 THE SAME ENZYME SOAKED WITH FLUORIDE DBREF 2AKM A 1 433 UNP P09104 ENOG_HUMAN 1 433 DBREF 2AKM B 1 433 UNP P09104 ENOG_HUMAN 1 433 SEQADV 2AKM HIS A 434 UNP P09104 EXPRESSION TAG SEQADV 2AKM HIS A 435 UNP P09104 EXPRESSION TAG SEQADV 2AKM HIS A 436 UNP P09104 EXPRESSION TAG SEQADV 2AKM HIS A 437 UNP P09104 EXPRESSION TAG SEQADV 2AKM HIS A 438 UNP P09104 EXPRESSION TAG SEQADV 2AKM HIS A 439 UNP P09104 EXPRESSION TAG SEQADV 2AKM HIS B 434 UNP P09104 EXPRESSION TAG SEQADV 2AKM HIS B 435 UNP P09104 EXPRESSION TAG SEQADV 2AKM HIS B 436 UNP P09104 EXPRESSION TAG SEQADV 2AKM HIS B 437 UNP P09104 EXPRESSION TAG SEQADV 2AKM HIS B 438 UNP P09104 EXPRESSION TAG SEQADV 2AKM HIS B 439 UNP P09104 EXPRESSION TAG SEQRES 1 A 439 SER ILE GLU LYS ILE TRP ALA ARG GLU ILE LEU ASP SER SEQRES 2 A 439 ARG GLY ASN PRO THR VAL GLU VAL ASP LEU TYR THR ALA SEQRES 3 A 439 LYS GLY LEU PHE ARG ALA ALA VAL PRO SER GLY ALA SER SEQRES 4 A 439 THR GLY ILE TYR GLU ALA LEU GLU LEU ARG ASP GLY ASP SEQRES 5 A 439 LYS GLN ARG TYR LEU GLY LYS GLY VAL LEU LYS ALA VAL SEQRES 6 A 439 ASP HIS ILE ASN SER THR ILE ALA PRO ALA LEU ILE SER SEQRES 7 A 439 SER GLY LEU SER VAL VAL GLU GLN GLU LYS LEU ASP ASN SEQRES 8 A 439 LEU MET LEU GLU LEU ASP GLY THR GLU ASN LYS SER LYS SEQRES 9 A 439 PHE GLY ALA ASN ALA ILE LEU GLY VAL SER LEU ALA VAL SEQRES 10 A 439 CYS LYS ALA GLY ALA ALA GLU ARG GLU LEU PRO LEU TYR SEQRES 11 A 439 ARG HIS ILE ALA GLN LEU ALA GLY ASN SER ASP LEU ILE SEQRES 12 A 439 LEU PRO VAL PRO ALA PHE ASN VAL ILE ASN GLY GLY SER SEQRES 13 A 439 HIS ALA GLY ASN LYS LEU ALA MET GLN GLU PHE MET ILE SEQRES 14 A 439 LEU PRO VAL GLY ALA GLU SER PHE ARG ASP ALA MET ARG SEQRES 15 A 439 LEU GLY ALA GLU VAL TYR HIS THR LEU LYS GLY VAL ILE SEQRES 16 A 439 LYS ASP LYS TYR GLY LYS ASP ALA THR ASN VAL GLY ASP SEQRES 17 A 439 GLU GLY GLY PHE ALA PRO ASN ILE LEU GLU ASN SER GLU SEQRES 18 A 439 ALA LEU GLU LEU VAL LYS GLU ALA ILE ASP LYS ALA GLY SEQRES 19 A 439 TYR THR GLU LYS ILE VAL ILE GLY MET ASP VAL ALA ALA SEQRES 20 A 439 SER GLU PHE TYR ARG ASP GLY LYS TYR ASP LEU ASP PHE SEQRES 21 A 439 LYS SER PRO THR ASP PRO SER ARG TYR ILE THR GLY ASP SEQRES 22 A 439 GLN LEU GLY ALA LEU TYR GLN ASP PHE VAL ARG ASP TYR SEQRES 23 A 439 PRO VAL VAL SER ILE GLU ASP PRO PHE ASP GLN ASP ASP SEQRES 24 A 439 TRP ALA ALA TRP SER LYS PHE THR ALA ASN VAL GLY ILE SEQRES 25 A 439 GLN ILE VAL GLY ASP ASP LEU THR VAL THR ASN PRO LYS SEQRES 26 A 439 ARG ILE GLU ARG ALA VAL GLU GLU LYS ALA CYS ASN CYS SEQRES 27 A 439 LEU LEU LEU LYS VAL ASN GLN ILE GLY SER VAL THR GLU SEQRES 28 A 439 ALA ILE GLN ALA CYS LYS LEU ALA GLN GLU ASN GLY TRP SEQRES 29 A 439 GLY VAL MET VAL SER HIS ARG SER GLY GLU THR GLU ASP SEQRES 30 A 439 THR PHE ILE ALA ASP LEU VAL VAL GLY LEU CYS THR GLY SEQRES 31 A 439 GLN ILE LYS THR GLY ALA PRO CYS ARG SER GLU ARG LEU SEQRES 32 A 439 ALA LYS TYR ASN GLN LEU MET ARG ILE GLU GLU GLU LEU SEQRES 33 A 439 GLY ASP GLU ALA ARG PHE ALA GLY HIS ASN PHE ARG ASN SEQRES 34 A 439 PRO SER VAL LEU HIS HIS HIS HIS HIS HIS SEQRES 1 B 439 SER ILE GLU LYS ILE TRP ALA ARG GLU ILE LEU ASP SER SEQRES 2 B 439 ARG GLY ASN PRO THR VAL GLU VAL ASP LEU TYR THR ALA SEQRES 3 B 439 LYS GLY LEU PHE ARG ALA ALA VAL PRO SER GLY ALA SER SEQRES 4 B 439 THR GLY ILE TYR GLU ALA LEU GLU LEU ARG ASP GLY ASP SEQRES 5 B 439 LYS GLN ARG TYR LEU GLY LYS GLY VAL LEU LYS ALA VAL SEQRES 6 B 439 ASP HIS ILE ASN SER THR ILE ALA PRO ALA LEU ILE SER SEQRES 7 B 439 SER GLY LEU SER VAL VAL GLU GLN GLU LYS LEU ASP ASN SEQRES 8 B 439 LEU MET LEU GLU LEU ASP GLY THR GLU ASN LYS SER LYS SEQRES 9 B 439 PHE GLY ALA ASN ALA ILE LEU GLY VAL SER LEU ALA VAL SEQRES 10 B 439 CYS LYS ALA GLY ALA ALA GLU ARG GLU LEU PRO LEU TYR SEQRES 11 B 439 ARG HIS ILE ALA GLN LEU ALA GLY ASN SER ASP LEU ILE SEQRES 12 B 439 LEU PRO VAL PRO ALA PHE ASN VAL ILE ASN GLY GLY SER SEQRES 13 B 439 HIS ALA GLY ASN LYS LEU ALA MET GLN GLU PHE MET ILE SEQRES 14 B 439 LEU PRO VAL GLY ALA GLU SER PHE ARG ASP ALA MET ARG SEQRES 15 B 439 LEU GLY ALA GLU VAL TYR HIS THR LEU LYS GLY VAL ILE SEQRES 16 B 439 LYS ASP LYS TYR GLY LYS ASP ALA THR ASN VAL GLY ASP SEQRES 17 B 439 GLU GLY GLY PHE ALA PRO ASN ILE LEU GLU ASN SER GLU SEQRES 18 B 439 ALA LEU GLU LEU VAL LYS GLU ALA ILE ASP LYS ALA GLY SEQRES 19 B 439 TYR THR GLU LYS ILE VAL ILE GLY MET ASP VAL ALA ALA SEQRES 20 B 439 SER GLU PHE TYR ARG ASP GLY LYS TYR ASP LEU ASP PHE SEQRES 21 B 439 LYS SER PRO THR ASP PRO SER ARG TYR ILE THR GLY ASP SEQRES 22 B 439 GLN LEU GLY ALA LEU TYR GLN ASP PHE VAL ARG ASP TYR SEQRES 23 B 439 PRO VAL VAL SER ILE GLU ASP PRO PHE ASP GLN ASP ASP SEQRES 24 B 439 TRP ALA ALA TRP SER LYS PHE THR ALA ASN VAL GLY ILE SEQRES 25 B 439 GLN ILE VAL GLY ASP ASP LEU THR VAL THR ASN PRO LYS SEQRES 26 B 439 ARG ILE GLU ARG ALA VAL GLU GLU LYS ALA CYS ASN CYS SEQRES 27 B 439 LEU LEU LEU LYS VAL ASN GLN ILE GLY SER VAL THR GLU SEQRES 28 B 439 ALA ILE GLN ALA CYS LYS LEU ALA GLN GLU ASN GLY TRP SEQRES 29 B 439 GLY VAL MET VAL SER HIS ARG SER GLY GLU THR GLU ASP SEQRES 30 B 439 THR PHE ILE ALA ASP LEU VAL VAL GLY LEU CYS THR GLY SEQRES 31 B 439 GLN ILE LYS THR GLY ALA PRO CYS ARG SER GLU ARG LEU SEQRES 32 B 439 ALA LYS TYR ASN GLN LEU MET ARG ILE GLU GLU GLU LEU SEQRES 33 B 439 GLY ASP GLU ALA ARG PHE ALA GLY HIS ASN PHE ARG ASN SEQRES 34 B 439 PRO SER VAL LEU HIS HIS HIS HIS HIS HIS HET MG A 440 1 HET MG A 441 1 HET PO4 A 442 5 HET TRS A 460 8 HET MG B 440 1 HET PO4 B 442 5 HETNAM MG MAGNESIUM ION HETNAM PO4 PHOSPHATE ION HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN TRS TRIS BUFFER FORMUL 3 MG 3(MG 2+) FORMUL 5 PO4 2(O4 P 3-) FORMUL 6 TRS C4 H12 N O3 1+ FORMUL 9 HOH *377(H2 O) HELIX 1 1 ARG A 55 LYS A 59 5 5 HELIX 2 2 VAL A 61 THR A 71 1 11 HELIX 3 3 THR A 71 SER A 79 1 9 HELIX 4 4 GLU A 85 GLY A 98 1 14 HELIX 5 5 GLY A 106 ARG A 125 1 20 HELIX 6 6 PRO A 128 GLY A 138 1 11 HELIX 7 7 GLY A 155 ALA A 158 5 4 HELIX 8 8 SER A 176 GLY A 200 1 25 HELIX 9 9 LYS A 201 THR A 204 5 4 HELIX 10 10 GLU A 218 ALA A 233 1 16 HELIX 11 11 ALA A 246 TYR A 251 5 6 HELIX 12 12 ASP A 265 TYR A 269 5 5 HELIX 13 13 THR A 271 TYR A 286 1 16 HELIX 14 14 ASP A 299 VAL A 310 1 12 HELIX 15 15 ASN A 323 LYS A 334 1 12 HELIX 16 16 LYS A 342 GLY A 347 1 6 HELIX 17 17 SER A 348 ASN A 362 1 15 HELIX 18 18 THR A 378 LEU A 387 1 10 HELIX 19 19 ARG A 399 GLY A 417 1 19 HELIX 20 20 ASP A 418 ALA A 420 5 3 HELIX 21 21 ALA A 423 PHE A 427 5 5 HELIX 22 22 ASN A 429 LEU A 433 5 5 HELIX 23 23 ARG B 55 LYS B 59 5 5 HELIX 24 24 VAL B 61 THR B 71 1 11 HELIX 25 25 THR B 71 SER B 79 1 9 HELIX 26 26 GLU B 85 GLY B 98 1 14 HELIX 27 27 GLY B 106 ARG B 125 1 20 HELIX 28 28 PRO B 128 GLY B 138 1 11 HELIX 29 29 SER B 176 GLY B 200 1 25 HELIX 30 30 LYS B 201 THR B 204 5 4 HELIX 31 31 GLU B 218 ALA B 233 1 16 HELIX 32 32 ALA B 246 GLU B 249 5 4 HELIX 33 33 THR B 271 TYR B 286 1 16 HELIX 34 34 ASP B 299 ASN B 309 1 11 HELIX 35 35 ASN B 323 GLU B 333 1 11 HELIX 36 36 LYS B 342 GLY B 347 1 6 HELIX 37 37 SER B 348 ASN B 362 1 15 HELIX 38 38 THR B 378 LEU B 387 1 10 HELIX 39 39 ARG B 399 LEU B 416 1 18 HELIX 40 40 ALA B 423 PHE B 427 5 5 SHEET 1 A 3 LYS A 4 LEU A 11 0 SHEET 2 A 3 PRO A 17 THR A 25 -1 O TYR A 24 N LYS A 4 SHEET 3 A 3 GLY A 28 ALA A 33 -1 O PHE A 30 N LEU A 23 SHEET 1 B 9 VAL A 146 PRO A 147 0 SHEET 2 B 9 GLN A 391 LYS A 393 1 O ILE A 392 N VAL A 146 SHEET 3 B 9 GLY A 365 SER A 369 1 N VAL A 368 O GLN A 391 SHEET 4 B 9 CYS A 338 LEU A 341 1 N LEU A 339 O MET A 367 SHEET 5 B 9 GLN A 313 GLY A 316 1 N GLY A 316 O CYS A 338 SHEET 6 B 9 VAL A 288 GLU A 292 1 N VAL A 289 O GLN A 313 SHEET 7 B 9 VAL A 240 ASP A 244 1 N MET A 243 O GLU A 292 SHEET 8 B 9 GLU A 166 LEU A 170 -1 N MET A 168 O GLY A 242 SHEET 9 B 9 PHE A 149 ASN A 153 -1 N PHE A 149 O ILE A 169 SHEET 1 C 3 LYS B 4 LEU B 11 0 SHEET 2 C 3 PRO B 17 THR B 25 -1 O TYR B 24 N LYS B 4 SHEET 3 C 3 GLY B 28 ALA B 33 -1 O PHE B 30 N LEU B 23 SHEET 1 D 9 VAL B 146 PRO B 147 0 SHEET 2 D 9 GLN B 391 LYS B 393 1 O ILE B 392 N VAL B 146 SHEET 3 D 9 GLY B 365 SER B 369 1 N VAL B 368 O LYS B 393 SHEET 4 D 9 CYS B 338 LEU B 341 1 N LEU B 341 O MET B 367 SHEET 5 D 9 GLN B 313 GLY B 316 1 N GLY B 316 O CYS B 338 SHEET 6 D 9 VAL B 288 GLU B 292 1 N ILE B 291 O GLN B 313 SHEET 7 D 9 VAL B 240 ASP B 244 1 N MET B 243 O SER B 290 SHEET 8 D 9 GLU B 166 LEU B 170 -1 N MET B 168 O GLY B 242 SHEET 9 D 9 PHE B 149 ASN B 153 -1 N PHE B 149 O ILE B 169 SHEET 1 E 2 TYR B 251 ARG B 252 0 SHEET 2 E 2 LYS B 255 TYR B 256 -1 O LYS B 255 N ARG B 252 LINK O SER A 39 MG MG A 441 1555 1555 2.06 LINK OG SER A 39 MG MG A 441 1555 1555 2.29 LINK OD1 ASP A 244 MG MG A 440 1555 1555 2.34 LINK OE1 GLU A 292 MG MG A 440 1555 1555 2.01 LINK OD1 ASP A 317 MG MG A 440 1555 1555 1.77 LINK MG MG A 440 O HOH A 461 1555 1555 2.37 LINK MG MG A 440 O HOH A 462 1555 1555 2.71 LINK MG MG A 440 O HOH A 463 1555 1555 2.33 LINK MG MG A 441 O1 PO4 A 442 1555 1555 2.05 LINK MG MG A 441 O HOH A 461 1555 1555 2.22 LINK MG MG A 441 O HOH A 464 1555 1555 2.37 LINK MG MG A 441 O HOH A 465 1555 1555 2.29 LINK OD1 ASP B 244 MG MG B 440 1555 1555 2.84 LINK OE1 GLU B 292 MG MG B 440 1555 1555 2.03 LINK OD1 ASP B 317 MG MG B 440 1555 1555 2.22 LINK MG MG B 440 O HOH B 444 1555 1555 2.09 LINK MG MG B 440 O HOH B 445 1555 1555 2.19 LINK MG MG B 440 O HOH B 446 1555 1555 2.38 SITE 1 AC1 6 ASP A 244 GLU A 292 ASP A 317 HOH A 461 SITE 2 AC1 6 HOH A 462 HOH A 463 SITE 1 AC2 6 SER A 39 LYS A 342 PO4 A 442 HOH A 461 SITE 2 AC2 6 HOH A 464 HOH A 465 SITE 1 AC3 10 GLY A 37 ALA A 38 SER A 39 HIS A 157 SITE 2 AC3 10 LYS A 342 ARG A 371 SER A 372 MG A 441 SITE 3 AC3 10 HOH A 465 HOH A 490 SITE 1 AC4 6 ASP B 244 GLU B 292 ASP B 317 HOH B 444 SITE 2 AC4 6 HOH B 445 HOH B 446 SITE 1 AC5 8 ALA B 38 SER B 39 LYS B 342 HIS B 370 SITE 2 AC5 8 ARG B 371 SER B 372 HOH B 444 HOH B 445 SITE 1 AC6 7 THR A 40 GLY A 41 ILE A 42 SER A 248 SITE 2 AC6 7 GLU A 249 GLN A 297 HOH A 568 CRYST1 111.739 119.692 68.299 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008949 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008355 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014642 0.00000