PDB Short entry for 2ALZ HEADER TRANSFERASE/DNA 08-AUG-05 2ALZ TITLE TERNARY COMPLEX OF HPOLI WITH DNA AND DCTP COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*TP*GP*GP*GP*GP*TP*CP*CP*T)-3'; COMPND 3 CHAIN: T; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: DNA TEMPLATE; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 5'-D(*AP*GP*GP*AP*CP*CP*(DOC))-3'; COMPND 8 CHAIN: P; COMPND 9 ENGINEERED: YES; COMPND 10 OTHER_DETAILS: DNA PRIMER; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA POLYMERASE IOTA; COMPND 13 CHAIN: A; COMPND 14 SYNONYM: RAD30 HOMOLOG B, ETA2; COMPND 15 EC: 2.7.7.7; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 GENE: POLI, RAD30B; SOURCE 10 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 11 EXPRESSION_SYSTEM_COMMON: BAKER'S YEAST; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 4932; SOURCE 13 EXPRESSION_SYSTEM_STRAIN: BJ5464; SOURCE 14 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 15 EXPRESSION_SYSTEM_PLASMID: PBJ941 KEYWDS RIGHT HANDED, DNA POLYMERASE, TERNARY COMPLEX, TEMPLATE G. INCOMING KEYWDS 2 DCTP, HOOGSTEEN BASE PAIR, TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.T.NAIR,R.E.JOHNSON,L.PRAKASH,S.PRAKASH,A.K.AGGARWAL REVDAT 4 23-AUG-23 2ALZ 1 REMARK LINK REVDAT 3 13-JUL-11 2ALZ 1 VERSN REVDAT 2 24-FEB-09 2ALZ 1 VERSN REVDAT 1 25-OCT-05 2ALZ 0 JRNL AUTH D.T.NAIR,R.E.JOHNSON,L.PRAKASH,S.PRAKASH,A.K.AGGARWAL JRNL TITL HUMAN DNA POLYMERASE IOTA INCORPORATES DCTP OPPOSITE JRNL TITL 2 TEMPLATE G VIA A G.C+ HOOGSTEEN BASE PAIR. JRNL REF STRUCTURE V. 13 1569 2005 JRNL REFN ISSN 0969-2126 JRNL PMID 16216587 JRNL DOI 10.1016/J.STR.2005.08.010 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 20339 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2027 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1276 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2540 REMARK 3 BIN FREE R VALUE SET COUNT : 166 REMARK 3 BIN FREE R VALUE : 0.3070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2874 REMARK 3 NUCLEIC ACID ATOMS : 322 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 79 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.93000 REMARK 3 B22 (A**2) : 0.93000 REMARK 3 B33 (A**2) : -1.39000 REMARK 3 B12 (A**2) : 0.46000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.478 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.301 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.223 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.853 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.924 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.897 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3299 ; 0.050 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4524 ; 3.190 ; 2.112 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 370 ; 7.347 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 516 ; 0.208 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2309 ; 0.016 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1374 ; 0.302 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 164 ; 0.246 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 19 ; 0.337 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.380 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1860 ; 1.884 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2996 ; 3.335 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1439 ; 4.468 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1528 ; 6.253 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 26 A 37 REMARK 3 RESIDUE RANGE : A 99 A 224 REMARK 3 ORIGIN FOR THE GROUP (A): 16.3438 16.5375 6.0781 REMARK 3 T TENSOR REMARK 3 T11: 0.3898 T22: 0.3830 REMARK 3 T33: 0.3096 T12: 0.0179 REMARK 3 T13: -0.0122 T23: -0.0092 REMARK 3 L TENSOR REMARK 3 L11: 0.3588 L22: 0.7846 REMARK 3 L33: 1.9011 L12: 0.1203 REMARK 3 L13: 0.2540 L23: 0.4018 REMARK 3 S TENSOR REMARK 3 S11: 0.0647 S12: 0.0336 S13: 0.0059 REMARK 3 S21: -0.0206 S22: -0.1188 S23: 0.0138 REMARK 3 S31: 0.0705 S32: 0.2142 S33: 0.0541 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 38 A 98 REMARK 3 ORIGIN FOR THE GROUP (A): -4.9600 16.1357 23.6401 REMARK 3 T TENSOR REMARK 3 T11: 0.3131 T22: 0.3429 REMARK 3 T33: 0.4542 T12: -0.1281 REMARK 3 T13: 0.1040 T23: -0.1294 REMARK 3 L TENSOR REMARK 3 L11: 2.8093 L22: 2.9484 REMARK 3 L33: 6.0581 L12: -1.2040 REMARK 3 L13: -0.8828 L23: 0.4688 REMARK 3 S TENSOR REMARK 3 S11: 0.0788 S12: 0.0137 S13: -0.3578 REMARK 3 S21: 0.3055 S22: -0.3291 S23: 0.6859 REMARK 3 S31: 0.2718 S32: -0.2846 S33: 0.2503 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 225 A 287 REMARK 3 ORIGIN FOR THE GROUP (A): 0.4889 35.4704 -3.2889 REMARK 3 T TENSOR REMARK 3 T11: 0.3795 T22: 0.2717 REMARK 3 T33: 0.4888 T12: 0.0245 REMARK 3 T13: -0.1688 T23: -0.0415 REMARK 3 L TENSOR REMARK 3 L11: 2.9279 L22: 2.9952 REMARK 3 L33: 4.0367 L12: -0.9832 REMARK 3 L13: 2.7703 L23: 0.3580 REMARK 3 S TENSOR REMARK 3 S11: -0.4652 S12: -0.0778 S13: 0.6493 REMARK 3 S21: -0.1231 S22: -0.1596 S23: -0.0863 REMARK 3 S31: -0.3962 S32: -0.1495 S33: 0.6248 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 298 A 414 REMARK 3 ORIGIN FOR THE GROUP (A): 7.2756 41.0709 32.8688 REMARK 3 T TENSOR REMARK 3 T11: 0.6301 T22: 0.2298 REMARK 3 T33: 0.3142 T12: -0.2922 REMARK 3 T13: 0.2805 T23: -0.2637 REMARK 3 L TENSOR REMARK 3 L11: 6.9815 L22: 8.4853 REMARK 3 L33: 3.7757 L12: 1.2328 REMARK 3 L13: -1.8301 L23: 0.1166 REMARK 3 S TENSOR REMARK 3 S11: 1.0479 S12: -0.3472 S13: 0.6124 REMARK 3 S21: 1.3248 S22: -0.6834 S23: 0.9378 REMARK 3 S31: -0.1738 S32: 0.2586 S33: -0.3645 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : T 839 T 847 REMARK 3 RESIDUE RANGE : P 867 P 873 REMARK 3 RESIDUE RANGE : A 875 A 875 REMARK 3 RESIDUE RANGE : A 871 A 872 REMARK 3 ORIGIN FOR THE GROUP (A): 4.5685 36.7789 17.2676 REMARK 3 T TENSOR REMARK 3 T11: 0.4032 T22: 0.3192 REMARK 3 T33: 0.5119 T12: -0.0784 REMARK 3 T13: 0.0173 T23: -0.0711 REMARK 3 L TENSOR REMARK 3 L11: 1.4275 L22: 2.1999 REMARK 3 L33: 0.5682 L12: -0.6439 REMARK 3 L13: -0.4337 L23: -0.3448 REMARK 3 S TENSOR REMARK 3 S11: 0.0301 S12: -0.0049 S13: 0.4890 REMARK 3 S21: 0.0384 S22: -0.0755 S23: 0.5017 REMARK 3 S31: -0.1463 S32: 0.1403 S33: 0.0454 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2ALZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-AUG-05. REMARK 100 THE DEPOSITION ID IS D_1000034049. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-OCT-04 REMARK 200 TEMPERATURE (KELVIN) : 110.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.072 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20339 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 9.800 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.43700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 6.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1T3N REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG 5K MME, 0.4 M AMMONIUM REMARK 280 SULFATE, 0.1 M MES BUFFER, PH 6.5, HANGING DROP, PH 6.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 135.21533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 67.60767 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 101.41150 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 33.80383 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 169.01917 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 135.21533 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 67.60767 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 33.80383 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 101.41150 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 169.01917 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: T, P, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 49.05700 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 84.96922 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 33.80383 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 371 REMARK 465 LEU A 372 REMARK 465 GLY A 373 REMARK 465 THR A 374 REMARK 465 GLY A 375 REMARK 465 ASN A 376 REMARK 465 TYR A 377 REMARK 465 ASP A 378 REMARK 465 VAL A 395 REMARK 465 ASN A 396 REMARK 465 VAL A 397 REMARK 465 LYS A 398 REMARK 465 MET A 399 REMARK 465 PRO A 400 REMARK 465 PHE A 401 REMARK 465 HIS A 402 REMARK 465 LEU A 403 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 146 CG OD1 OD2 REMARK 470 LYS A 245 CG CD CE NZ REMARK 470 LYS A 271 CG CD CE NZ REMARK 470 VAL A 315 CG1 CG2 REMARK 470 GLU A 316 CG CD OE1 OE2 REMARK 470 LYS A 338 CG CD CE NZ REMARK 470 TYR A 349 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER A 350 OG REMARK 470 SER A 351 OG REMARK 470 GLU A 352 CG CD OE1 OE2 REMARK 470 LYS A 353 CG CD CE NZ REMARK 470 HIS A 354 CG ND1 CD2 CE1 NE2 REMARK 470 TYR A 355 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 HIS A 367 CG ND1 CD2 CE1 NE2 REMARK 470 VAL A 379 CG1 CG2 REMARK 470 ASP A 385 CG OD1 OD2 REMARK 470 ILE A 386 CG1 CG2 CD1 REMARK 470 LYS A 389 CG CD CE NZ REMARK 470 LEU A 405 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 335 NH1 ARG A 337 2.12 REMARK 500 ND2 ASN A 290 O HOH A 902 2.15 REMARK 500 OP2 DT T 844 OG SER A 301 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O3' DT T 847 O5' DA P 867 10665 1.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT T 839 C5' DT T 839 C4' 0.061 REMARK 500 DT T 839 O3' DT T 839 C3' 0.089 REMARK 500 DG T 841 C4 DG T 841 C5 -0.045 REMARK 500 DG T 842 O3' DG T 842 C3' -0.091 REMARK 500 DG T 842 C5 DG T 842 N7 -0.036 REMARK 500 DG T 842 C2 DG T 842 N2 0.061 REMARK 500 DG T 843 P DG T 843 O5' 0.078 REMARK 500 DG T 843 C3' DG T 843 C2' -0.050 REMARK 500 DG T 843 C2' DG T 843 C1' 0.076 REMARK 500 DG T 843 O4' DG T 843 C1' -0.098 REMARK 500 DG T 843 C5 DG T 843 N7 -0.056 REMARK 500 DT T 844 O5' DT T 844 C5' 0.097 REMARK 500 DT T 844 C2' DT T 844 C1' 0.072 REMARK 500 DT T 844 O3' DT T 844 C3' -0.095 REMARK 500 DT T 844 C1' DT T 844 N1 0.090 REMARK 500 DT T 844 N1 DT T 844 C2 -0.048 REMARK 500 DT T 844 C4 DT T 844 C5 0.066 REMARK 500 DT T 844 C5 DT T 844 C6 0.068 REMARK 500 DT T 844 C5 DT T 844 C7 0.104 REMARK 500 DC T 845 P DC T 845 O5' 0.072 REMARK 500 DC T 845 N1 DC T 845 C6 -0.058 REMARK 500 DC T 845 N3 DC T 845 C4 -0.043 REMARK 500 DC T 846 C4 DC T 846 N4 0.056 REMARK 500 DT T 847 C5' DT T 847 C4' 0.042 REMARK 500 DT T 847 O3' DT T 847 C3' 0.136 REMARK 500 DT T 847 C5 DT T 847 C7 0.087 REMARK 500 DA P 867 C5' DA P 867 C4' 0.047 REMARK 500 DA P 867 C4 DA P 867 C5 -0.042 REMARK 500 DA P 870 P DA P 870 O5' 0.060 REMARK 500 DA P 870 C2' DA P 870 C1' 0.070 REMARK 500 DA P 870 C8 DA P 870 N9 -0.053 REMARK 500 DA P 870 O3' DC P 871 P 0.111 REMARK 500 DC P 871 O4' DC P 871 C1' -0.089 REMARK 500 DC P 871 O3' DC P 871 C3' -0.101 REMARK 500 DC P 871 C4 DC P 871 N4 -0.056 REMARK 500 DC P 872 O4' DC P 872 C4' 0.091 REMARK 500 DC P 872 O3' DC P 872 C3' -0.121 REMARK 500 SER A 46 CB SER A 46 OG -0.087 REMARK 500 ARG A 103 CZ ARG A 103 NH2 0.113 REMARK 500 MET A 105 CG MET A 105 SD 0.200 REMARK 500 SER A 117 CB SER A 117 OG 0.103 REMARK 500 ARG A 122 CG ARG A 122 CD 0.185 REMARK 500 ARG A 122 CD ARG A 122 NE -0.110 REMARK 500 GLU A 127 CD GLU A 127 OE1 0.096 REMARK 500 GLU A 134 CD GLU A 134 OE1 0.073 REMARK 500 VAL A 151 CA VAL A 151 CB -0.136 REMARK 500 ARG A 184 CD ARG A 184 NE -0.132 REMARK 500 GLU A 185 CG GLU A 185 CD 0.091 REMARK 500 LYS A 214 CA LYS A 214 C -0.248 REMARK 500 ASN A 216 N ASN A 216 CA 0.139 REMARK 500 REMARK 500 THIS ENTRY HAS 52 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT T 839 O4' - C4' - C3' ANGL. DEV. = -5.0 DEGREES REMARK 500 DT T 839 C5' - C4' - C3' ANGL. DEV. = 9.8 DEGREES REMARK 500 DT T 839 N1 - C1' - C2' ANGL. DEV. = 8.6 DEGREES REMARK 500 DT T 839 C3' - O3' - P ANGL. DEV. = 11.4 DEGREES REMARK 500 DG T 840 O5' - P - OP2 ANGL. DEV. = -6.1 DEGREES REMARK 500 DG T 840 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 DG T 840 N7 - C8 - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 DG T 840 C8 - N9 - C4 ANGL. DEV. = -4.0 DEGREES REMARK 500 DG T 840 N9 - C4 - C5 ANGL. DEV. = 2.5 DEGREES REMARK 500 DG T 840 N1 - C6 - O6 ANGL. DEV. = -9.9 DEGREES REMARK 500 DG T 840 C5 - C6 - O6 ANGL. DEV. = 9.3 DEGREES REMARK 500 DG T 841 C3' - C2' - C1' ANGL. DEV. = -5.0 DEGREES REMARK 500 DG T 841 O4' - C1' - C2' ANGL. DEV. = 3.2 DEGREES REMARK 500 DG T 841 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DG T 841 C6 - N1 - C2 ANGL. DEV. = -6.5 DEGREES REMARK 500 DG T 841 C2 - N3 - C4 ANGL. DEV. = 5.0 DEGREES REMARK 500 DG T 841 C5 - C6 - N1 ANGL. DEV. = 5.8 DEGREES REMARK 500 DG T 841 N3 - C2 - N2 ANGL. DEV. = 4.3 DEGREES REMARK 500 DG T 842 O4' - C4' - C3' ANGL. DEV. = 4.9 DEGREES REMARK 500 DG T 842 C4' - C3' - O3' ANGL. DEV. = 16.0 DEGREES REMARK 500 DG T 842 C4' - C3' - C2' ANGL. DEV. = -6.3 DEGREES REMARK 500 DG T 842 C3' - C2' - C1' ANGL. DEV. = 11.1 DEGREES REMARK 500 DG T 842 O4' - C1' - C2' ANGL. DEV. = -7.3 DEGREES REMARK 500 DG T 842 O4' - C1' - N9 ANGL. DEV. = -14.8 DEGREES REMARK 500 DG T 842 C6 - N1 - C2 ANGL. DEV. = -4.5 DEGREES REMARK 500 DG T 842 C5 - C6 - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 DG T 842 C4 - C5 - N7 ANGL. DEV. = -5.1 DEGREES REMARK 500 DG T 842 C5 - N7 - C8 ANGL. DEV. = 4.2 DEGREES REMARK 500 DG T 842 C8 - N9 - C4 ANGL. DEV. = -2.8 DEGREES REMARK 500 DG T 842 N9 - C4 - C5 ANGL. DEV. = 4.6 DEGREES REMARK 500 DG T 842 C6 - C5 - N7 ANGL. DEV. = 4.7 DEGREES REMARK 500 DG T 842 N1 - C6 - O6 ANGL. DEV. = -3.8 DEGREES REMARK 500 DG T 843 O4' - C4' - C3' ANGL. DEV. = 9.8 DEGREES REMARK 500 DG T 843 C1' - O4' - C4' ANGL. DEV. = -8.8 DEGREES REMARK 500 DG T 843 C4' - C3' - C2' ANGL. DEV. = -12.7 DEGREES REMARK 500 DG T 843 O4' - C1' - C2' ANGL. DEV. = -10.0 DEGREES REMARK 500 DG T 843 O4' - C1' - N9 ANGL. DEV. = -9.8 DEGREES REMARK 500 DG T 843 C4 - C5 - N7 ANGL. DEV. = -3.4 DEGREES REMARK 500 DG T 843 C5 - N7 - C8 ANGL. DEV. = 4.5 DEGREES REMARK 500 DG T 843 C8 - N9 - C4 ANGL. DEV. = -3.1 DEGREES REMARK 500 DG T 843 N9 - C4 - C5 ANGL. DEV. = 2.9 DEGREES REMARK 500 DG T 843 N1 - C6 - O6 ANGL. DEV. = -3.8 DEGREES REMARK 500 DT T 844 C5' - C4' - C3' ANGL. DEV. = -11.0 DEGREES REMARK 500 DT T 844 O4' - C1' - N1 ANGL. DEV. = -4.7 DEGREES REMARK 500 DT T 844 C6 - N1 - C2 ANGL. DEV. = -4.5 DEGREES REMARK 500 DT T 844 N1 - C2 - N3 ANGL. DEV. = 4.1 DEGREES REMARK 500 DT T 844 N3 - C4 - C5 ANGL. DEV. = 7.4 DEGREES REMARK 500 DT T 844 C4 - C5 - C6 ANGL. DEV. = -11.9 DEGREES REMARK 500 DT T 844 C5 - C6 - N1 ANGL. DEV. = 8.0 DEGREES REMARK 500 DT T 844 N3 - C4 - O4 ANGL. DEV. = -10.6 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 105 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 26 -81.19 -117.59 REMARK 500 CYS A 37 61.34 19.51 REMARK 500 ASP A 52 -4.76 50.86 REMARK 500 LYS A 60 -127.35 58.03 REMARK 500 CYS A 88 85.23 -161.41 REMARK 500 ASP A 146 -49.89 -163.64 REMARK 500 PRO A 215 -86.70 -61.98 REMARK 500 HIS A 235 149.12 -171.19 REMARK 500 LYS A 245 -71.14 -69.83 REMARK 500 GLU A 272 -8.81 -162.76 REMARK 500 SER A 276 -72.90 -77.92 REMARK 500 ASP A 289 106.10 -170.23 REMARK 500 PHE A 308 83.60 -168.03 REMARK 500 LYS A 310 -7.00 78.79 REMARK 500 GLU A 314 33.94 109.07 REMARK 500 VAL A 315 -36.18 -169.70 REMARK 500 LYS A 318 -29.11 -143.14 REMARK 500 ARG A 347 126.43 174.25 REMARK 500 SER A 350 -76.56 163.85 REMARK 500 LYS A 353 5.54 -63.65 REMARK 500 HIS A 354 -25.53 54.26 REMARK 500 TYR A 355 124.93 -172.88 REMARK 500 CYS A 362 130.77 -171.52 REMARK 500 CYS A 411 -169.63 -121.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 213 LYS A 214 -147.88 REMARK 500 HIS A 354 TYR A 355 -149.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DC P 871 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 871 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 34 OD2 REMARK 620 2 LEU A 35 O 88.3 REMARK 620 3 ASP A 126 OD1 89.6 86.8 REMARK 620 4 DCP A 875 O1G 95.1 95.1 175.0 REMARK 620 5 DCP A 875 O1A 110.2 160.3 86.6 90.0 REMARK 620 6 DCP A 875 O2B 176.2 88.3 88.7 86.7 73.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 872 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 34 OD1 REMARK 620 2 ASP A 126 OD2 115.2 REMARK 620 3 GLU A 127 OE2 88.7 98.1 REMARK 620 4 DCP A 875 O1A 112.7 73.0 158.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 872 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 871 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DCP A 875 DBREF 2ALZ A 25 414 UNP Q9UNA4 POLI_HUMAN 25 414 DBREF 2ALZ T 839 847 PDB 2ALZ 2ALZ 839 847 DBREF 2ALZ P 867 873 PDB 2ALZ 2ALZ 867 873 SEQRES 1 T 9 DT DG DG DG DG DT DC DC DT SEQRES 1 P 7 DA DG DG DA DC DC DOC SEQRES 1 A 390 ALA SER SER ARG VAL ILE VAL HIS VAL ASP LEU ASP CYS SEQRES 2 A 390 PHE TYR ALA GLN VAL GLU MET ILE SER ASN PRO GLU LEU SEQRES 3 A 390 LYS ASP LYS PRO LEU GLY VAL GLN GLN LYS TYR LEU VAL SEQRES 4 A 390 VAL THR CYS ASN TYR GLU ALA ARG LYS LEU GLY VAL LYS SEQRES 5 A 390 LYS LEU MET ASN VAL ARG ASP ALA LYS GLU LYS CYS PRO SEQRES 6 A 390 GLN LEU VAL LEU VAL ASN GLY GLU ASP LEU THR ARG TYR SEQRES 7 A 390 ARG GLU MET SER TYR LYS VAL THR GLU LEU LEU GLU GLU SEQRES 8 A 390 PHE SER PRO VAL VAL GLU ARG LEU GLY PHE ASP GLU ASN SEQRES 9 A 390 PHE VAL ASP LEU THR GLU MET VAL GLU LYS ARG LEU GLN SEQRES 10 A 390 GLN LEU GLN SER ASP GLU LEU SER ALA VAL THR VAL SER SEQRES 11 A 390 GLY HIS VAL TYR ASN ASN GLN SER ILE ASN LEU LEU ASP SEQRES 12 A 390 VAL LEU HIS ILE ARG LEU LEU VAL GLY SER GLN ILE ALA SEQRES 13 A 390 ALA GLU MET ARG GLU ALA MET TYR ASN GLN LEU GLY LEU SEQRES 14 A 390 THR GLY CYS ALA GLY VAL ALA SER ASN LYS LEU LEU ALA SEQRES 15 A 390 LYS LEU VAL SER GLY VAL PHE LYS PRO ASN GLN GLN THR SEQRES 16 A 390 VAL LEU LEU PRO GLU SER CYS GLN HIS LEU ILE HIS SER SEQRES 17 A 390 LEU ASN HIS ILE LYS GLU ILE PRO GLY ILE GLY TYR LYS SEQRES 18 A 390 THR ALA LYS CYS LEU GLU ALA LEU GLY ILE ASN SER VAL SEQRES 19 A 390 ARG ASP LEU GLN THR PHE SER PRO LYS ILE LEU GLU LYS SEQRES 20 A 390 GLU LEU GLY ILE SER VAL ALA GLN ARG ILE GLN LYS LEU SEQRES 21 A 390 SER PHE GLY GLU ASP ASN SER PRO VAL ILE LEU SER GLY SEQRES 22 A 390 PRO PRO GLN SER PHE SER GLU GLU ASP SER PHE LYS LYS SEQRES 23 A 390 CYS SER SER GLU VAL GLU ALA LYS ASN LYS ILE GLU GLU SEQRES 24 A 390 LEU LEU ALA SER LEU LEU ASN ARG VAL CYS GLN ASP GLY SEQRES 25 A 390 ARG LYS PRO HIS THR VAL ARG LEU ILE ILE ARG ARG TYR SEQRES 26 A 390 SER SER GLU LYS HIS TYR GLY ARG GLU SER ARG GLN CYS SEQRES 27 A 390 PRO ILE PRO SER HIS VAL ILE GLN LYS LEU GLY THR GLY SEQRES 28 A 390 ASN TYR ASP VAL MET THR PRO MET VAL ASP ILE LEU MET SEQRES 29 A 390 LYS LEU PHE ARG ASN MET VAL ASN VAL LYS MET PRO PHE SEQRES 30 A 390 HIS LEU THR LEU LEU SER VAL CYS PHE CYS ASN LEU LYS MODRES 2ALZ DOC P 873 DC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE HET DOC P 873 18 HET MG A 872 1 HET MG A 871 1 HET DCP A 875 28 HETNAM DOC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM DCP 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE FORMUL 2 DOC C9 H14 N3 O6 P FORMUL 4 MG 2(MG 2+) FORMUL 6 DCP C9 H16 N3 O13 P3 FORMUL 7 HOH *79(H2 O) HELIX 1 1 CYS A 37 ASN A 47 1 11 HELIX 2 2 PRO A 48 LYS A 51 5 4 HELIX 3 3 ASN A 67 LEU A 73 1 7 HELIX 4 4 VAL A 81 LYS A 87 1 7 HELIX 5 5 LEU A 99 SER A 117 1 19 HELIX 6 6 LEU A 132 LEU A 143 1 12 HELIX 7 7 ASP A 146 ALA A 150 5 5 HELIX 8 8 ASP A 167 GLY A 192 1 26 HELIX 9 9 ASN A 202 GLY A 211 1 10 HELIX 10 10 LEU A 222 GLU A 224 5 3 HELIX 11 11 SER A 225 SER A 232 1 8 HELIX 12 12 HIS A 235 ILE A 239 5 5 HELIX 13 13 GLY A 243 LEU A 253 1 11 HELIX 14 14 SER A 257 PHE A 264 1 8 HELIX 15 15 SER A 265 PHE A 286 1 22 HELIX 16 16 LYS A 318 GLY A 336 1 19 HELIX 17 17 PRO A 365 GLN A 370 1 6 HELIX 18 18 MET A 380 MET A 394 1 15 SHEET 1 A 6 VAL A 120 LEU A 123 0 SHEET 2 A 6 GLU A 127 ASP A 131 -1 O PHE A 129 N GLU A 121 SHEET 3 A 6 ILE A 30 LEU A 35 -1 N VAL A 33 O ASN A 128 SHEET 4 A 6 GLY A 195 ALA A 200 -1 O CYS A 196 N ASP A 34 SHEET 5 A 6 GLN A 218 VAL A 220 1 O THR A 219 N VAL A 199 SHEET 6 A 6 HIS A 156 VAL A 157 1 N HIS A 156 O GLN A 218 SHEET 1 B 4 MET A 79 ASN A 80 0 SHEET 2 B 4 LEU A 62 CYS A 66 -1 N VAL A 63 O MET A 79 SHEET 3 B 4 LEU A 55 GLN A 59 -1 N VAL A 57 O THR A 65 SHEET 4 B 4 VAL A 92 ASN A 95 1 O VAL A 92 N GLY A 56 SHEET 1 C 4 SER A 301 SER A 307 0 SHEET 2 C 4 LEU A 405 LYS A 414 -1 O PHE A 410 N PHE A 302 SHEET 3 C 4 LYS A 338 ILE A 346 -1 N ARG A 343 O CYS A 409 SHEET 4 C 4 GLU A 358 PRO A 363 -1 O GLU A 358 N ILE A 346 LINK O3' DC P 872 P DOC P 873 1555 1555 1.56 LINK OD2 ASP A 34 MG MG A 871 1555 1555 2.23 LINK OD1 ASP A 34 MG MG A 872 1555 1555 2.94 LINK O LEU A 35 MG MG A 871 1555 1555 2.10 LINK OD1 ASP A 126 MG MG A 871 1555 1555 2.08 LINK OD2 ASP A 126 MG MG A 872 1555 1555 3.07 LINK OE2 GLU A 127 MG MG A 872 1555 1555 2.28 LINK MG MG A 871 O1G DCP A 875 1555 1555 2.33 LINK MG MG A 871 O1A DCP A 875 1555 1555 2.31 LINK MG MG A 871 O2B DCP A 875 1555 1555 2.20 LINK MG MG A 872 O1A DCP A 875 1555 1555 2.36 SITE 1 AC1 6 ASP A 34 ASP A 126 GLU A 127 MG A 871 SITE 2 AC1 6 DCP A 875 DOC P 873 SITE 1 AC2 5 ASP A 34 LEU A 35 ASP A 126 MG A 872 SITE 2 AC2 5 DCP A 875 SITE 1 AC3 21 ASP A 34 LEU A 35 ASP A 36 CYS A 37 SITE 2 AC3 21 PHE A 38 TYR A 39 VAL A 64 THR A 65 SITE 3 AC3 21 TYR A 68 ARG A 71 LYS A 77 ASP A 126 SITE 4 AC3 21 LYS A 214 MG A 871 MG A 872 HOH A 908 SITE 5 AC3 21 HOH A 923 DOC P 873 DG T 840 DG T 841 SITE 6 AC3 21 HOH T 903 CRYST1 98.114 98.114 202.823 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010192 0.005884 0.000000 0.00000 SCALE2 0.000000 0.011769 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004930 0.00000