PDB Short entry for 2AMY HEADER ISOMERASE 10-AUG-05 2AMY TITLE X-RAY STRUCTURE OF HUMAN PHOSPHOMANNOMUTASE 2 (PMM2) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOMANNOMUTASE 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PMM 2; COMPND 5 EC: 5.4.2.8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HS.459855; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B834 P(RARE2); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PVP 16 KEYWDS HS.459855, HS.313504, BC008310, PHOSPHATASE, PFAM PF03332, HAD KEYWDS 2 SUPERFAMILY, JAECKEN DISEASE, CARBOHYDRATE-DEFICIENT GLYCOPROTEIN KEYWDS 3 SYNDROME, STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, PSI, KEYWDS 4 CESG, CENTER FOR EUKARYOTIC STRUCTURAL GENOMICS, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR G.E.WESENBERG,G.N.PHILLIPS JR.,J.G.MCCOY,E.BITTO,C.A.BINGMAN, AUTHOR 2 S.T.M.ALLARD,CENTER FOR EUKARYOTIC STRUCTURAL GENOMICS (CESG) REVDAT 5 24-JAN-18 2AMY 1 JRNL REVDAT 4 11-OCT-17 2AMY 1 REMARK REVDAT 3 13-JUL-11 2AMY 1 VERSN REVDAT 2 24-FEB-09 2AMY 1 VERSN REVDAT 1 23-AUG-05 2AMY 0 JRNL AUTH CENTER FOR EUKARYOTIC STRUCTURAL GENOMICS (CESG) JRNL TITL X-RAY STRUCTURE OF HUMAN PHOSPHOMANNOMUTASE 2 (PMM2) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 17514 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 924 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.09 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1138 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.19 REMARK 3 BIN R VALUE (WORKING SET) : 0.2350 REMARK 3 BIN FREE R VALUE SET COUNT : 90 REMARK 3 BIN FREE R VALUE : 0.2970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1943 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 142 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.79000 REMARK 3 B22 (A**2) : 0.79000 REMARK 3 B33 (A**2) : -1.18000 REMARK 3 B12 (A**2) : 0.39000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.216 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.207 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.170 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.513 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2001 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2681 ; 1.821 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 238 ; 6.850 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 101 ;40.427 ;24.257 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 370 ;17.162 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;15.440 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 283 ; 0.135 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1518 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 943 ; 0.224 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1378 ; 0.310 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 124 ; 0.203 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 37 ; 0.246 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.203 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1250 ; 1.838 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1930 ; 3.005 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 865 ; 5.216 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 751 ; 6.650 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 84 REMARK 3 ORIGIN FOR THE GROUP (A): 41.5435 -9.8874 -3.8083 REMARK 3 T TENSOR REMARK 3 T11: -0.0125 T22: -0.0203 REMARK 3 T33: -0.2456 T12: -0.3528 REMARK 3 T13: -0.0350 T23: 0.0297 REMARK 3 L TENSOR REMARK 3 L11: 4.8606 L22: 3.8510 REMARK 3 L33: 2.5112 L12: -1.5799 REMARK 3 L13: 0.3934 L23: 0.2416 REMARK 3 S TENSOR REMARK 3 S11: -0.1111 S12: 0.2731 S13: 0.2499 REMARK 3 S21: 0.0242 S22: 0.0396 S23: -0.2110 REMARK 3 S31: -0.4915 S32: 0.3850 S33: 0.0715 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 85 A 198 REMARK 3 ORIGIN FOR THE GROUP (A): 16.4164 -8.8753 9.4686 REMARK 3 T TENSOR REMARK 3 T11: 0.0287 T22: -0.3065 REMARK 3 T33: -0.0677 T12: -0.0590 REMARK 3 T13: -0.0065 T23: 0.0652 REMARK 3 L TENSOR REMARK 3 L11: 1.2239 L22: 1.4339 REMARK 3 L33: 5.0062 L12: 0.2332 REMARK 3 L13: -0.6967 L23: 2.3094 REMARK 3 S TENSOR REMARK 3 S11: -0.2582 S12: 0.0865 S13: -0.0931 REMARK 3 S21: 0.1429 S22: 0.0069 S23: 0.3586 REMARK 3 S31: 0.4160 S32: 0.1641 S33: 0.2513 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 199 A 246 REMARK 3 ORIGIN FOR THE GROUP (A): 36.0691 -22.2711 -7.1268 REMARK 3 T TENSOR REMARK 3 T11: -0.1345 T22: -0.0581 REMARK 3 T33: -0.2002 T12: -0.2446 REMARK 3 T13: -0.0313 T23: -0.0617 REMARK 3 L TENSOR REMARK 3 L11: 4.5858 L22: 5.5761 REMARK 3 L33: 2.5763 L12: -1.0498 REMARK 3 L13: 0.2020 L23: -0.7216 REMARK 3 S TENSOR REMARK 3 S11: 0.0527 S12: 0.3304 S13: -0.4978 REMARK 3 S21: -0.1983 S22: 0.0803 S23: 0.3414 REMARK 3 S31: -0.1696 S32: 0.1776 S33: -0.1330 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS, SELENIUM C COEFFICIENT FOR STRUCTURE FACTOR REMARK 3 CALCULATION SET TO -9.00, MOLPROBITY USED TO ASSIST IN FINAL REMARK 3 MODEL BUILDING. REMARK 4 REMARK 4 2AMY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-AUG-05. REMARK 100 THE DEPOSITION ID IS D_1000034081. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUL-05; 13-JUN-05 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : APS; APS REMARK 200 BEAMLINE : 22-BM; 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97243; 0.97625, 0.97947 REMARK 200 MONOCHROMATOR : WATER COOLED SI (111) DOUBLE REMARK 200 BOUNCE; CRYOGENICALLY COOLED SI REMARK 200 (220) DOUBLE BOUNCE REMARK 200 OPTICS : HORIZONTAL SAGITALLY FOCUSING REMARK 200 2ND BENT MONOCHROMATOR CRYSTAL, REMARK 200 VERTICAL BENT FOCUSING MIRROR; REMARK 200 HORIZONTAL SAGITALLY FOCUSING REMARK 200 2ND BENT MONOCHROMATOR CRYSTAL, REMARK 200 VERTICAL BENT FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD; MARMOSAIC REMARK 200 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17547 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.090 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 12.30 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.3560 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.5 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.59900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.031 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP, DM 5.0, SOLOMON REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MG/ML PROTEIN, 24 % W/V PEG 2K, REMARK 280 0.12 M GLYCINE, 0.1 M TRIETHANOLAMINE, PH 8.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 277K. 10 MG/ML PROTEIN, 24 % W/V PEG REMARK 280 2K, 0.12 M GLYCINE, 0.1 M TRIETHANOLAMINE, PH 8.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.76667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 33.38333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 33.38333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 66.76667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 449 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 PRO A 213 REMARK 465 GLY A 214 REMARK 465 GLY A 215 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MSE A 28 SE MSE A 28 CE -0.386 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 225 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 13 -71.61 -85.01 REMARK 500 ARG A 116 -103.36 -122.92 REMARK 500 TRP A 187 32.41 -84.30 REMARK 500 ALA A 233 156.89 166.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLY A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLY A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GLY A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: GO.36653 RELATED DB: TARGETDB DBREF 2AMY A 2 246 UNP O15305 PMM2_HUMAN 2 246 SEQADV 2AMY SER A 1 UNP O15305 CLONING ARTIFACT SEQADV 2AMY MSE A 28 UNP O15305 MET 28 MODIFIED RESIDUE SEQADV 2AMY MSE A 126 UNP O15305 MET 126 MODIFIED RESIDUE SEQADV 2AMY MSE A 212 UNP O15305 MET 212 MODIFIED RESIDUE SEQADV 2AMY MSE A 227 UNP O15305 MET 227 MODIFIED RESIDUE SEQRES 1 A 246 SER ALA ALA PRO GLY PRO ALA LEU CYS LEU PHE ASP VAL SEQRES 2 A 246 ASP GLY THR LEU THR ALA PRO ARG GLN LYS ILE THR LYS SEQRES 3 A 246 GLU MSE ASP ASP PHE LEU GLN LYS LEU ARG GLN LYS ILE SEQRES 4 A 246 LYS ILE GLY VAL VAL GLY GLY SER ASP PHE GLU LYS VAL SEQRES 5 A 246 GLN GLU GLN LEU GLY ASN ASP VAL VAL GLU LYS TYR ASP SEQRES 6 A 246 TYR VAL PHE PRO GLU ASN GLY LEU VAL ALA TYR LYS ASP SEQRES 7 A 246 GLY LYS LEU LEU CYS ARG GLN ASN ILE GLN SER HIS LEU SEQRES 8 A 246 GLY GLU ALA LEU ILE GLN ASP LEU ILE ASN TYR CYS LEU SEQRES 9 A 246 SER TYR ILE ALA LYS ILE LYS LEU PRO LYS LYS ARG GLY SEQRES 10 A 246 THR PHE ILE GLU PHE ARG ASN GLY MSE LEU ASN VAL SER SEQRES 11 A 246 PRO ILE GLY ARG SER CYS SER GLN GLU GLU ARG ILE GLU SEQRES 12 A 246 PHE TYR GLU LEU ASP LYS LYS GLU ASN ILE ARG GLN LYS SEQRES 13 A 246 PHE VAL ALA ASP LEU ARG LYS GLU PHE ALA GLY LYS GLY SEQRES 14 A 246 LEU THR PHE SER ILE GLY GLY GLN ILE SER PHE ASP VAL SEQRES 15 A 246 PHE PRO ASP GLY TRP ASP LYS ARG TYR CYS LEU ARG HIS SEQRES 16 A 246 VAL GLU ASN ASP GLY TYR LYS THR ILE TYR PHE PHE GLY SEQRES 17 A 246 ASP LYS THR MSE PRO GLY GLY ASN ASP HIS GLU ILE PHE SEQRES 18 A 246 THR ASP PRO ARG THR MSE GLY TYR SER VAL THR ALA PRO SEQRES 19 A 246 GLU ASP THR ARG ARG ILE CYS GLU LEU LEU PHE SER MODRES 2AMY MSE A 28 MET SELENOMETHIONINE MODRES 2AMY MSE A 126 MET SELENOMETHIONINE MODRES 2AMY MSE A 212 MET SELENOMETHIONINE MODRES 2AMY MSE A 227 MET SELENOMETHIONINE HET MSE A 28 8 HET MSE A 126 8 HET MSE A 212 8 HET MSE A 227 8 HET EDO A 300 4 HET GLY A 400 5 HET GLY A 401 5 HET GLY A 402 5 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETNAM GLY GLYCINE HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 EDO C2 H6 O2 FORMUL 3 GLY 3(C2 H5 N O2) FORMUL 6 HOH *142(H2 O) HELIX 1 1 THR A 25 ARG A 36 1 12 HELIX 2 2 ASP A 48 GLY A 57 1 10 HELIX 3 3 ASP A 59 TYR A 64 1 6 HELIX 4 4 PRO A 69 GLY A 72 5 4 HELIX 5 5 ASN A 86 GLY A 92 1 7 HELIX 6 6 GLY A 92 ILE A 110 1 19 HELIX 7 7 SER A 137 ASN A 152 1 16 HELIX 8 8 ASN A 152 PHE A 165 1 14 HELIX 9 9 ASP A 188 VAL A 196 5 9 HELIX 10 10 HIS A 218 ASP A 223 1 6 HELIX 11 11 ALA A 233 PHE A 245 1 13 SHEET 1 A 7 LYS A 80 ARG A 84 0 SHEET 2 A 7 VAL A 74 LYS A 77 -1 N ALA A 75 O LEU A 82 SHEET 3 A 7 TYR A 66 PHE A 68 -1 N VAL A 67 O TYR A 76 SHEET 4 A 7 LYS A 40 VAL A 44 1 N VAL A 43 O PHE A 68 SHEET 5 A 7 ALA A 7 ASP A 12 1 N CYS A 9 O GLY A 42 SHEET 6 A 7 THR A 203 GLY A 208 1 O TYR A 205 N LEU A 10 SHEET 7 A 7 THR A 226 SER A 230 1 O TYR A 229 N PHE A 206 SHEET 1 B 4 ILE A 120 ARG A 123 0 SHEET 2 B 4 MSE A 126 VAL A 129 -1 O ASN A 128 N GLU A 121 SHEET 3 B 4 SER A 179 PRO A 184 -1 O VAL A 182 N LEU A 127 SHEET 4 B 4 LEU A 170 GLY A 175 -1 N SER A 173 O ASP A 181 LINK C GLU A 27 N MSE A 28 1555 1555 1.34 LINK C MSE A 28 N ASP A 29 1555 1555 1.32 LINK C GLY A 125 N MSE A 126 1555 1555 1.33 LINK C MSE A 126 N LEU A 127 1555 1555 1.33 LINK C THR A 211 N MSE A 212 1555 1555 1.33 LINK O ASP A 223 N GLY A 401 1555 1555 2.03 LINK C THR A 226 N MSE A 227 1555 1555 1.33 LINK C MSE A 227 N GLY A 228 1555 1555 1.34 SITE 1 AC1 3 TYR A 106 LYS A 109 GLY A 402 SITE 1 AC2 6 ARG A 21 TYR A 201 LYS A 202 ARG A 225 SITE 2 AC2 6 HOH A 480 HOH A 513 SITE 1 AC3 5 PHE A 221 THR A 222 ASP A 223 THR A 226 SITE 2 AC3 5 GLY A 228 SITE 1 AC4 5 TYR A 102 SER A 105 LYS A 109 EDO A 300 SITE 2 AC4 5 HOH A 523 CRYST1 70.622 70.622 100.150 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014160 0.008170 0.000000 0.00000 SCALE2 0.000000 0.016350 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009980 0.00000