PDB Short entry for 2ARW HEADER CYTOKINE 22-AUG-05 2ARW TITLE THE SOLUTION STRUCTURE OF THE MEMBRANE PROXIMAL CYTOKINE RECEPTOR TITLE 2 DOMAIN OF THE HUMAN INTERLEUKIN-6 RECEPTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERLEUKIN-6 RECEPTOR ALPHA CHAIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: THIRD EXTRACELLULAR DOMAIN; COMPND 5 SYNONYM: IL-6R-ALPHA, IL-6R 1, CD126 ANTIGEN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PRSET 5B KEYWDS FIBRONECTIN-TYPE III LIKE, CYTOKINE EXPDTA SOLUTION NMR MDLTYP MINIMIZED AVERAGE AUTHOR O.HECHT,A.J.DINGLEY,A.SCHWANTNER,S.OZBEK,S.ROSE-JOHN,J.GROTZINGER REVDAT 5 26-FEB-20 2ARW 1 REMARK SEQADV REVDAT 4 21-APR-09 2ARW 1 REMARK REVDAT 3 24-FEB-09 2ARW 1 VERSN REVDAT 2 13-FEB-07 2ARW 1 JRNL REVDAT 1 12-SEP-06 2ARW 0 JRNL AUTH O.HECHT,A.J.DINGLEY,A.SCHWANTER,S.OZBEK,S.ROSE-JOHN, JRNL AUTH 2 J.GROTZINGER JRNL TITL THE SOLUTION STRUCTURE OF THE MEMBRANE-PROXIMAL CYTOKINE JRNL TITL 2 RECEPTOR DOMAIN OF THE HUMAN INTERLEUKIN-6 RECEPTOR JRNL REF BIOL.CHEM. V. 387 1255 2006 JRNL REFN ISSN 1431-6730 JRNL PMID 16972794 JRNL DOI 10.1515/BC.2006.155 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DYANA 1.5, DYANA 1.5 REMARK 3 AUTHORS : GUENTERT (DYANA), GUENTERT (DYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES IS BASED ON A TOTAL OF REMARK 3 932 NOE-DERIVED DISTANCE RESTRAINTS REMARK 4 REMARK 4 2ARW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-AUG-05. REMARK 100 THE DEPOSITION ID IS D_1000034240. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 5.0 REMARK 210 IONIC STRENGTH : 50MM PHOSPHATE REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20MM PHOSPHATEBUFFER PH 5.0, 95% REMARK 210 H2O, 5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : CBCA(CO)NH; CBCANH; HNCA; 3D_15N REMARK 210 -SEPARATED_NOESY; HBHA(CBCACO)NH; REMARK 210 3D_13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : TORSION ANGLE DYNAMICSU REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 RES C SSSEQI REMARK 465 PRO A 104 REMARK 465 TRP A 105 REMARK 465 THR A 106 REMARK 465 GLU A 107 REMARK 465 SER A 108 REMARK 465 ARG A 109 REMARK 465 SER A 110 REMARK 465 PRO A 111 REMARK 465 PRO A 112 REMARK 465 ALA A 113 REMARK 465 GLU A 114 REMARK 465 ASN A 115 REMARK 465 GLU A 116 REMARK 465 VAL A 117 REMARK 465 SER A 118 REMARK 465 THR A 119 REMARK 465 PRO A 120 REMARK 465 MET A 121 REMARK 465 GLN A 122 REMARK 465 ALA A 123 REMARK 465 LEU A 124 REMARK 465 THR A 125 REMARK 465 THR A 126 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 47 CB - CG - CD2 ANGL. DEV. = -4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 5 92.48 -11.35 REMARK 500 ILE A 12 94.96 -60.98 REMARK 500 VAL A 17 144.70 58.73 REMARK 500 ARG A 19 -24.60 79.40 REMARK 500 ASN A 20 135.16 -38.20 REMARK 500 ASP A 30 152.01 -28.93 REMARK 500 PRO A 31 108.88 -58.22 REMARK 500 SER A 36 -18.53 69.61 REMARK 500 SER A 37 33.57 -70.13 REMARK 500 PHE A 38 -55.09 -168.72 REMARK 500 LEU A 45 41.58 -159.99 REMARK 500 ARG A 48 121.53 -175.44 REMARK 500 VAL A 60 85.00 -10.77 REMARK 500 LYS A 61 77.19 13.90 REMARK 500 ASP A 62 -62.08 78.37 REMARK 500 LEU A 63 104.75 178.55 REMARK 500 HIS A 65 20.29 -75.58 REMARK 500 HIS A 66 115.24 179.36 REMARK 500 CYS A 67 -159.91 -140.58 REMARK 500 ILE A 69 -26.09 -37.63 REMARK 500 HIS A 70 -37.62 46.68 REMARK 500 SER A 74 -128.36 -4.97 REMARK 500 GLN A 85 -120.23 -76.73 REMARK 500 GLU A 86 139.78 -174.19 REMARK 500 GLU A 87 38.38 -73.64 REMARK 500 PHE A 88 -26.79 177.66 REMARK 500 GLN A 90 -108.99 -91.74 REMARK 500 GLU A 92 149.91 -175.79 REMARK 500 TRP A 96 146.86 62.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 19 0.14 SIDE CHAIN REMARK 500 TYR A 47 0.09 SIDE CHAIN REMARK 500 PHE A 55 0.10 SIDE CHAIN REMARK 500 HIS A 78 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ALA A 18 10.53 REMARK 500 THR A 56 14.83 REMARK 500 LEU A 63 10.96 REMARK 500 ALA A 84 11.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5940 RELATED DB: BMRB DBREF 2ARW A 2 126 UNP P08887 IL6RA_HUMAN 212 336 SEQADV 2ARW MET A 1 UNP P08887 INITIATING METHIONINE SEQRES 1 A 126 MET GLY ILE LEU GLN PRO ASP PRO PRO ALA ASN ILE THR SEQRES 2 A 126 VAL THR ALA VAL ALA ARG ASN PRO ARG TRP LEU SER VAL SEQRES 3 A 126 THR TRP GLN ASP PRO HIS SER TRP ASN SER SER PHE TYR SEQRES 4 A 126 ARG LEU ARG PHE GLU LEU ARG TYR ARG ALA GLU ARG SER SEQRES 5 A 126 LYS THR PHE THR THR TRP MET VAL LYS ASP LEU GLN HIS SEQRES 6 A 126 HIS CYS VAL ILE HIS ASP ALA TRP SER GLY LEU ARG HIS SEQRES 7 A 126 VAL VAL GLN LEU ARG ALA GLN GLU GLU PHE GLY GLN GLY SEQRES 8 A 126 GLU TRP SER GLU TRP SER PRO GLU ALA MET GLY THR PRO SEQRES 9 A 126 TRP THR GLU SER ARG SER PRO PRO ALA GLU ASN GLU VAL SEQRES 10 A 126 SER THR PRO MET GLN ALA LEU THR THR SHEET 1 A 3 ALA A 10 THR A 15 0 SHEET 2 A 3 SER A 25 GLN A 29 -1 O GLN A 29 N ALA A 10 SHEET 3 A 3 HIS A 66 VAL A 68 -1 O CYS A 67 N VAL A 26 SHEET 1 B 3 ARG A 46 ALA A 49 0 SHEET 2 B 3 HIS A 78 GLN A 81 -1 O GLN A 81 N ARG A 46 SHEET 3 B 3 GLU A 99 GLY A 102 -1 O GLY A 102 N HIS A 78 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000