PDB Short entry for 2ASL HEADER TRANSFERASE/DNA 23-AUG-05 2ASL TITLE OXOG-MODIFIED POSTINSERTION BINARY COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*GP*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(DOC))-3'; COMPND 3 CHAIN: D, H; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: PRIMER STRAND (DIDEOXY-TERMINATED AT 3'-END); COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 5'-D(*CP*T*AP*AP*CP*(8OG) COMPND 8 P*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3'; COMPND 9 CHAIN: E, J; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: OXOG-MODIFIED TEMPLATE STRAND; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA POLYMERASE IV; COMPND 14 CHAIN: A, B; COMPND 15 SYNONYM: POL IV; COMPND 16 EC: 2.7.7.7; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 7 ORGANISM_TAXID: 2287; SOURCE 8 GENE: DBH, DPO4; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 11 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-RIL (STRATAGENE); SOURCE 12 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: PET-28A KEYWDS DNA POLYMERASE, 8-OXOGUANINE, Y-FAMILY, LESION BYPASS, TRANSFERASE- KEYWDS 2 DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR O.RECHKOBLIT,L.MALININA,Y.CHENG,V.KURYAVYI,S.BROYDE,N.E.GEACINTOV, AUTHOR 2 D.J.PATEL REVDAT 5 14-FEB-24 2ASL 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 2ASL 1 VERSN REVDAT 3 24-FEB-09 2ASL 1 VERSN REVDAT 2 17-JAN-06 2ASL 1 JRNL REVDAT 1 10-JAN-06 2ASL 0 JRNL AUTH O.RECHKOBLIT,L.MALININA,Y.CHENG,V.KURYAVYI,S.BROYDE, JRNL AUTH 2 N.E.GEACINTOV,D.J.PATEL JRNL TITL STEPWISE TRANSLOCATION OF DPO4 POLYMERASE DURING ERROR-FREE JRNL TITL 2 BYPASS OF AN OXOG LESION JRNL REF PLOS BIOL. V. 4 1 2006 JRNL REFN ISSN 1544-9173 JRNL PMID 16379496 JRNL DOI 10.1371/JOURNAL.PBIO.0040011 REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.8 REMARK 3 NUMBER OF REFLECTIONS : 29331 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.238 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3290 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.72 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1394 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3510 REMARK 3 BIN FREE R VALUE SET COUNT : 146 REMARK 3 BIN FREE R VALUE : 0.4290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5478 REMARK 3 NUCLEIC ACID ATOMS : 1258 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 181 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.93000 REMARK 3 B22 (A**2) : -0.25000 REMARK 3 B33 (A**2) : -0.99000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.26000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.352 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.394 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.277 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.636 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.912 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.865 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6970 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 5960 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9632 ; 1.456 ; 2.214 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13984 ; 0.816 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 680 ; 6.651 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1040 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6658 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1116 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1328 ; 0.203 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 6874 ; 0.213 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 3900 ; 0.079 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 178 ; 0.252 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 7 ; 0.345 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 15 ; 0.114 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 56 ; 0.234 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.310 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3398 ; 0.318 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5516 ; 0.629 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3572 ; 0.993 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4116 ; 1.712 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 341 REMARK 3 ORIGIN FOR THE GROUP (A): 6.8000 2.4270 9.3340 REMARK 3 T TENSOR REMARK 3 T11: 0.1380 T22: 0.0963 REMARK 3 T33: 0.0331 T12: 0.0402 REMARK 3 T13: 0.0517 T23: 0.0491 REMARK 3 L TENSOR REMARK 3 L11: 2.6153 L22: 1.2433 REMARK 3 L33: 0.9923 L12: 0.3583 REMARK 3 L13: 0.4300 L23: 0.3683 REMARK 3 S TENSOR REMARK 3 S11: -0.0215 S12: -0.0390 S13: -0.0948 REMARK 3 S21: -0.0954 S22: -0.0625 S23: -0.0790 REMARK 3 S31: 0.0951 S32: 0.0794 S33: 0.0840 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1001 B 1341 REMARK 3 ORIGIN FOR THE GROUP (A): 38.7000 103.5430 50.9500 REMARK 3 T TENSOR REMARK 3 T11: 0.2201 T22: 0.1399 REMARK 3 T33: 0.0568 T12: 0.0243 REMARK 3 T13: 0.0552 T23: 0.0512 REMARK 3 L TENSOR REMARK 3 L11: 2.7672 L22: 1.6996 REMARK 3 L33: 1.7555 L12: 0.1223 REMARK 3 L13: 0.9353 L23: 0.2231 REMARK 3 S TENSOR REMARK 3 S11: 0.1072 S12: 0.0636 S13: -0.2760 REMARK 3 S21: -0.3465 S22: -0.1212 S23: -0.1303 REMARK 3 S31: 0.1199 S32: 0.0149 S33: 0.0140 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 801 D 813 REMARK 3 RESIDUE RANGE : E 903 E 919 REMARK 3 RESIDUE RANGE : A 415 A 415 REMARK 3 RESIDUE RANGE : D 416 D 416 REMARK 3 ORIGIN FOR THE GROUP (A): -5.6070 -11.0280 7.4610 REMARK 3 T TENSOR REMARK 3 T11: 0.2700 T22: 0.1153 REMARK 3 T33: 0.1824 T12: -0.0381 REMARK 3 T13: -0.0247 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 2.6828 L22: 3.8442 REMARK 3 L33: 1.1995 L12: 1.2776 REMARK 3 L13: 0.9715 L23: 1.8183 REMARK 3 S TENSOR REMARK 3 S11: 0.1975 S12: -0.3000 S13: -0.4515 REMARK 3 S21: 0.3379 S22: -0.0853 S23: -0.3203 REMARK 3 S31: 0.3917 S32: 0.0043 S33: -0.1122 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1801 H 1813 REMARK 3 RESIDUE RANGE : J 1903 J 1919 REMARK 3 RESIDUE RANGE : B 1415 B 1415 REMARK 3 RESIDUE RANGE : J 1416 J 1416 REMARK 3 ORIGIN FOR THE GROUP (A): 26.8880 89.6930 46.8870 REMARK 3 T TENSOR REMARK 3 T11: 0.4010 T22: 0.2750 REMARK 3 T33: 0.2575 T12: -0.0297 REMARK 3 T13: -0.1407 T23: 0.0256 REMARK 3 L TENSOR REMARK 3 L11: 3.5374 L22: 4.6949 REMARK 3 L33: 2.1771 L12: 0.9402 REMARK 3 L13: 1.1844 L23: 3.0396 REMARK 3 S TENSOR REMARK 3 S11: 0.2536 S12: -0.1854 S13: -0.7638 REMARK 3 S21: 0.1586 S22: -0.1186 S23: -0.1042 REMARK 3 S31: 0.4584 S32: -0.1369 S33: -0.1351 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2ASL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-SEP-05. REMARK 100 THE DEPOSITION ID IS D_1000034264. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-NOV-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9810 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34610 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 2.200 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.50400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, HEPES-SODIUM, CALCIUM REMARK 280 ACETATE, PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 50.51200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, J, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 DC E 901 REMARK 465 DT E 902 REMARK 465 DC J 1901 REMARK 465 DT J 1902 REMARK 465 GLY A -7 REMARK 465 SER A -6 REMARK 465 HIS A -5 REMARK 465 MET A -4 REMARK 465 GLY A -3 REMARK 465 GLY A -2 REMARK 465 GLY A -1 REMARK 465 GLY A 0 REMARK 465 GLU A 342 REMARK 465 ALA A 343 REMARK 465 ILE A 344 REMARK 465 GLY A 345 REMARK 465 LEU A 346 REMARK 465 ASP A 347 REMARK 465 LYS A 348 REMARK 465 PHE A 349 REMARK 465 PHE A 350 REMARK 465 ASP A 351 REMARK 465 THR A 352 REMARK 465 GLY B -7 REMARK 465 SER B -6 REMARK 465 HIS B -5 REMARK 465 MET B -4 REMARK 465 GLY B -3 REMARK 465 GLY B -2 REMARK 465 GLY B -1 REMARK 465 GLY B 0 REMARK 465 GLU B 1342 REMARK 465 ALA B 1343 REMARK 465 ILE B 1344 REMARK 465 GLY B 1345 REMARK 465 LEU B 1346 REMARK 465 ASP B 1347 REMARK 465 LYS B 1348 REMARK 465 PHE B 1349 REMARK 465 PHE B 1350 REMARK 465 ASP B 1351 REMARK 465 THR B 1352 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DA E 903 P OP1 OP2 REMARK 470 DA J1903 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR B 1224 O HOH B 128 1.74 REMARK 500 O HOH B 1502 O HOH B 1503 1.76 REMARK 500 O HOH A 506 O HOH A 557 2.04 REMARK 500 OH TYR B 1273 O ILE B 1306 2.07 REMARK 500 OD2 ASP B 1105 O HOH B 1503 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT D 803 O4' - C1' - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 DG D 809 O4' - C1' - N9 ANGL. DEV. = 6.4 DEGREES REMARK 500 DG D 810 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 DT D 811 O4' - C1' - N1 ANGL. DEV. = 3.9 DEGREES REMARK 500 DG D 813 O4' - C1' - N9 ANGL. DEV. = 3.6 DEGREES REMARK 500 DA E 903 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DC E 905 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 8OG E 906 C3' - O3' - P ANGL. DEV. = 12.9 DEGREES REMARK 500 DC E 910 O4' - C1' - N1 ANGL. DEV. = 3.9 DEGREES REMARK 500 DC E 918 O4' - C4' - C3' ANGL. DEV. = -2.4 DEGREES REMARK 500 DC E 918 O4' - C1' - N1 ANGL. DEV. = 3.8 DEGREES REMARK 500 DC E 919 O4' - C1' - N1 ANGL. DEV. = 5.3 DEGREES REMARK 500 DG H1802 O4' - C1' - N9 ANGL. DEV. = 3.2 DEGREES REMARK 500 DT H1803 O4' - C1' - N1 ANGL. DEV. = 5.3 DEGREES REMARK 500 DG H1806 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DT H1808 C3' - O3' - P ANGL. DEV. = 7.3 DEGREES REMARK 500 DG H1809 O4' - C1' - N9 ANGL. DEV. = 4.4 DEGREES REMARK 500 DT H1811 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DG H1813 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DA J1904 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 DC J1905 C1' - O4' - C4' ANGL. DEV. = -7.7 DEGREES REMARK 500 DC J1905 O4' - C1' - N1 ANGL. DEV. = 5.9 DEGREES REMARK 500 8OG J1906 C3' - O3' - P ANGL. DEV. = 7.4 DEGREES REMARK 500 DC J1907 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DC J1910 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DC J1918 O4' - C1' - N1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ASP A 294 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP B1007 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP B1105 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP B1292 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP B1294 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 10 57.28 26.84 REMARK 500 ASN A 20 84.30 -151.00 REMARK 500 PRO A 21 -6.77 -59.03 REMARK 500 LYS A 159 -177.68 -41.05 REMARK 500 PRO A 160 140.52 -8.01 REMARK 500 ASP A 231 31.46 71.89 REMARK 500 ASN A 234 43.56 -159.79 REMARK 500 ASP A 277 75.32 47.24 REMARK 500 LYS A 278 -16.58 82.52 REMARK 500 TYR B1010 59.14 21.23 REMARK 500 ASP B1039 -20.04 85.13 REMARK 500 SER B1145 -176.30 -173.39 REMARK 500 LYS B1159 176.52 -42.85 REMARK 500 PRO B1160 127.15 0.11 REMARK 500 ASN B1234 42.76 -160.04 REMARK 500 ARG B1256 17.64 -140.18 REMARK 500 ASP B1277 77.71 48.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 159 PRO A 160 -116.01 REMARK 500 LYS B 1159 PRO B 1160 -115.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 416 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH D 505 O REMARK 620 2 HOH D 506 O 72.5 REMARK 620 3 HOH D 509 O 96.8 68.6 REMARK 620 4 HOH E 504 O 146.0 93.8 107.1 REMARK 620 5 HOH E 507 O 86.9 137.2 152.9 82.7 REMARK 620 6 HOH E 508 O 76.8 85.3 153.8 71.0 53.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 415 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DOC D 814 OP1 REMARK 620 2 ASP A 7 OD2 127.3 REMARK 620 3 ASP A 7 OD1 156.8 39.2 REMARK 620 4 ASP A 105 OD2 128.9 102.6 71.7 REMARK 620 5 HOH A 501 O 65.3 67.6 92.4 161.5 REMARK 620 6 HOH A 502 O 72.9 123.9 129.5 70.3 128.1 REMARK 620 7 HOH A 503 O 67.9 68.2 107.0 134.3 58.4 78.5 REMARK 620 8 HOH A 537 O 92.6 79.9 68.2 107.6 56.3 156.2 114.1 REMARK 620 9 HOH A 547 O 137.7 82.2 43.4 49.1 112.7 118.8 150.3 60.2 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA J1416 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH H1504 O REMARK 620 2 HOH H1506 O 107.3 REMARK 620 3 HOH H1508 O 105.5 60.4 REMARK 620 4 HOH H1509 O 73.9 77.0 135.5 REMARK 620 5 HOH J1507 O 110.7 141.9 110.3 111.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1415 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DOC H1814 OP1 REMARK 620 2 ASP B1007 OD2 147.0 REMARK 620 3 ASP B1105 OD2 117.1 90.8 REMARK 620 4 ASP B1105 OD1 105.8 106.3 46.2 REMARK 620 5 GLU B1106 OE1 69.3 114.4 118.2 72.3 REMARK 620 6 HOH B1501 O 96.2 62.0 95.3 141.2 146.4 REMARK 620 7 HOH B1503 O 133.8 55.0 45.9 87.6 154.0 54.8 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA D 416 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA J 1416 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ASD RELATED DB: PDB REMARK 900 OXOG-MODIFIED INSERTION TERNARY COMPLEX REMARK 900 RELATED ID: 2ASJ RELATED DB: PDB REMARK 900 OXOG-MODIFIED PREINSERTION BINARY COMPLEX REMARK 900 RELATED ID: 2AU0 RELATED DB: PDB REMARK 900 RELATED ID: 2ATL RELATED DB: PDB DBREF 2ASL A 2 352 UNP Q97W02 DPO42_SULSO 2 352 DBREF 2ASL B 1002 1352 UNP Q97W02 DPO42_SULSO 2 352 DBREF 2ASL D 801 814 PDB 2ASL 2ASL 801 814 DBREF 2ASL E 901 919 PDB 2ASL 2ASL 901 919 DBREF 2ASL H 1801 1814 PDB 2ASL 2ASL 1801 1814 DBREF 2ASL J 1901 1919 PDB 2ASL 2ASL 1901 1919 SEQADV 2ASL GLY A -7 UNP Q97W02 CLONING ARTIFACT SEQADV 2ASL SER A -6 UNP Q97W02 CLONING ARTIFACT SEQADV 2ASL HIS A -5 UNP Q97W02 CLONING ARTIFACT SEQADV 2ASL MET A -4 UNP Q97W02 CLONING ARTIFACT SEQADV 2ASL GLY A -3 UNP Q97W02 CLONING ARTIFACT SEQADV 2ASL GLY A -2 UNP Q97W02 CLONING ARTIFACT SEQADV 2ASL GLY A -1 UNP Q97W02 CLONING ARTIFACT SEQADV 2ASL GLY A 0 UNP Q97W02 CLONING ARTIFACT SEQADV 2ASL GLY A 1 UNP Q97W02 CLONING ARTIFACT SEQADV 2ASL GLY B -7 UNP Q97W02 CLONING ARTIFACT SEQADV 2ASL SER B -6 UNP Q97W02 CLONING ARTIFACT SEQADV 2ASL HIS B -5 UNP Q97W02 CLONING ARTIFACT SEQADV 2ASL MET B -4 UNP Q97W02 CLONING ARTIFACT SEQADV 2ASL GLY B -3 UNP Q97W02 CLONING ARTIFACT SEQADV 2ASL GLY B -2 UNP Q97W02 CLONING ARTIFACT SEQADV 2ASL GLY B -1 UNP Q97W02 CLONING ARTIFACT SEQADV 2ASL GLY B 0 UNP Q97W02 CLONING ARTIFACT SEQADV 2ASL GLY B 1001 UNP Q97W02 CLONING ARTIFACT SEQRES 1 D 14 DG DG DT DT DG DG DA DT DG DG DT DA DG SEQRES 2 D 14 DOC SEQRES 1 E 19 DC DT DA DA DC 8OG DC DT DA DC DC DA DT SEQRES 2 E 19 DC DC DA DA DC DC SEQRES 1 H 14 DG DG DT DT DG DG DA DT DG DG DT DA DG SEQRES 2 H 14 DOC SEQRES 1 J 19 DC DT DA DA DC 8OG DC DT DA DC DC DA DT SEQRES 2 J 19 DC DC DA DA DC DC SEQRES 1 A 360 GLY SER HIS MET GLY GLY GLY GLY GLY ILE VAL LEU PHE SEQRES 2 A 360 VAL ASP PHE ASP TYR PHE TYR ALA GLN VAL GLU GLU VAL SEQRES 3 A 360 LEU ASN PRO SER LEU LYS GLY LYS PRO VAL VAL VAL CYS SEQRES 4 A 360 VAL PHE SER GLY ARG PHE GLU ASP SER GLY ALA VAL ALA SEQRES 5 A 360 THR ALA ASN TYR GLU ALA ARG LYS PHE GLY VAL LYS ALA SEQRES 6 A 360 GLY ILE PRO ILE VAL GLU ALA LYS LYS ILE LEU PRO ASN SEQRES 7 A 360 ALA VAL TYR LEU PRO MET ARG LYS GLU VAL TYR GLN GLN SEQRES 8 A 360 VAL SER SER ARG ILE MET ASN LEU LEU ARG GLU TYR SER SEQRES 9 A 360 GLU LYS ILE GLU ILE ALA SER ILE ASP GLU ALA TYR LEU SEQRES 10 A 360 ASP ILE SER ASP LYS VAL ARG ASP TYR ARG GLU ALA TYR SEQRES 11 A 360 ASN LEU GLY LEU GLU ILE LYS ASN LYS ILE LEU GLU LYS SEQRES 12 A 360 GLU LYS ILE THR VAL THR VAL GLY ILE SER LYS ASN LYS SEQRES 13 A 360 VAL PHE ALA LYS ILE ALA ALA ASP MET ALA LYS PRO ASN SEQRES 14 A 360 GLY ILE LYS VAL ILE ASP ASP GLU GLU VAL LYS ARG LEU SEQRES 15 A 360 ILE ARG GLU LEU ASP ILE ALA ASP VAL PRO GLY ILE GLY SEQRES 16 A 360 ASN ILE THR ALA GLU LYS LEU LYS LYS LEU GLY ILE ASN SEQRES 17 A 360 LYS LEU VAL ASP THR LEU SER ILE GLU PHE ASP LYS LEU SEQRES 18 A 360 LYS GLY MET ILE GLY GLU ALA LYS ALA LYS TYR LEU ILE SEQRES 19 A 360 SER LEU ALA ARG ASP GLU TYR ASN GLU PRO ILE ARG THR SEQRES 20 A 360 ARG VAL ARG LYS SER ILE GLY ARG ILE VAL THR MET LYS SEQRES 21 A 360 ARG ASN SER ARG ASN LEU GLU GLU ILE LYS PRO TYR LEU SEQRES 22 A 360 PHE ARG ALA ILE GLU GLU SER TYR TYR LYS LEU ASP LYS SEQRES 23 A 360 ARG ILE PRO LYS ALA ILE HIS VAL VAL ALA VAL THR GLU SEQRES 24 A 360 ASP LEU ASP ILE VAL SER ARG GLY ARG THR PHE PRO HIS SEQRES 25 A 360 GLY ILE SER LYS GLU THR ALA TYR SER GLU SER VAL LYS SEQRES 26 A 360 LEU LEU GLN LYS ILE LEU GLU GLU ASP GLU ARG LYS ILE SEQRES 27 A 360 ARG ARG ILE GLY VAL ARG PHE SER LYS PHE ILE GLU ALA SEQRES 28 A 360 ILE GLY LEU ASP LYS PHE PHE ASP THR SEQRES 1 B 360 GLY SER HIS MET GLY GLY GLY GLY GLY ILE VAL LEU PHE SEQRES 2 B 360 VAL ASP PHE ASP TYR PHE TYR ALA GLN VAL GLU GLU VAL SEQRES 3 B 360 LEU ASN PRO SER LEU LYS GLY LYS PRO VAL VAL VAL CYS SEQRES 4 B 360 VAL PHE SER GLY ARG PHE GLU ASP SER GLY ALA VAL ALA SEQRES 5 B 360 THR ALA ASN TYR GLU ALA ARG LYS PHE GLY VAL LYS ALA SEQRES 6 B 360 GLY ILE PRO ILE VAL GLU ALA LYS LYS ILE LEU PRO ASN SEQRES 7 B 360 ALA VAL TYR LEU PRO MET ARG LYS GLU VAL TYR GLN GLN SEQRES 8 B 360 VAL SER SER ARG ILE MET ASN LEU LEU ARG GLU TYR SER SEQRES 9 B 360 GLU LYS ILE GLU ILE ALA SER ILE ASP GLU ALA TYR LEU SEQRES 10 B 360 ASP ILE SER ASP LYS VAL ARG ASP TYR ARG GLU ALA TYR SEQRES 11 B 360 ASN LEU GLY LEU GLU ILE LYS ASN LYS ILE LEU GLU LYS SEQRES 12 B 360 GLU LYS ILE THR VAL THR VAL GLY ILE SER LYS ASN LYS SEQRES 13 B 360 VAL PHE ALA LYS ILE ALA ALA ASP MET ALA LYS PRO ASN SEQRES 14 B 360 GLY ILE LYS VAL ILE ASP ASP GLU GLU VAL LYS ARG LEU SEQRES 15 B 360 ILE ARG GLU LEU ASP ILE ALA ASP VAL PRO GLY ILE GLY SEQRES 16 B 360 ASN ILE THR ALA GLU LYS LEU LYS LYS LEU GLY ILE ASN SEQRES 17 B 360 LYS LEU VAL ASP THR LEU SER ILE GLU PHE ASP LYS LEU SEQRES 18 B 360 LYS GLY MET ILE GLY GLU ALA LYS ALA LYS TYR LEU ILE SEQRES 19 B 360 SER LEU ALA ARG ASP GLU TYR ASN GLU PRO ILE ARG THR SEQRES 20 B 360 ARG VAL ARG LYS SER ILE GLY ARG ILE VAL THR MET LYS SEQRES 21 B 360 ARG ASN SER ARG ASN LEU GLU GLU ILE LYS PRO TYR LEU SEQRES 22 B 360 PHE ARG ALA ILE GLU GLU SER TYR TYR LYS LEU ASP LYS SEQRES 23 B 360 ARG ILE PRO LYS ALA ILE HIS VAL VAL ALA VAL THR GLU SEQRES 24 B 360 ASP LEU ASP ILE VAL SER ARG GLY ARG THR PHE PRO HIS SEQRES 25 B 360 GLY ILE SER LYS GLU THR ALA TYR SER GLU SER VAL LYS SEQRES 26 B 360 LEU LEU GLN LYS ILE LEU GLU GLU ASP GLU ARG LYS ILE SEQRES 27 B 360 ARG ARG ILE GLY VAL ARG PHE SER LYS PHE ILE GLU ALA SEQRES 28 B 360 ILE GLY LEU ASP LYS PHE PHE ASP THR MODRES 2ASL DOC D 814 DC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE MODRES 2ASL 8OG E 906 DG MODRES 2ASL DOC H 1814 DC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE MODRES 2ASL 8OG J 1906 DG HET DOC D 814 18 HET 8OG E 906 23 HET DOC H1814 18 HET 8OG J1906 23 HET CA D 416 1 HET CA J1416 1 HET CA A 415 1 HET CA B1415 1 HETNAM DOC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE HETNAM 8OG 8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE HETNAM CA CALCIUM ION HETSYN 8OG 8-OXO-7,8-DIHYDRO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE FORMUL 1 DOC 2(C9 H14 N3 O6 P) FORMUL 2 8OG 2(C10 H14 N5 O8 P) FORMUL 7 CA 4(CA 2+) FORMUL 11 HOH *181(H2 O) HELIX 1 1 TYR A 10 ASN A 20 1 11 HELIX 2 2 PRO A 21 LYS A 24 5 4 HELIX 3 3 ASN A 47 LYS A 52 1 6 HELIX 4 4 PRO A 60 LEU A 68 1 9 HELIX 5 5 ARG A 77 GLU A 94 1 18 HELIX 6 6 ASP A 117 LYS A 137 1 21 HELIX 7 7 ASN A 147 ALA A 158 1 12 HELIX 8 8 ASP A 167 LEU A 178 1 12 HELIX 9 9 ASP A 179 VAL A 183 5 5 HELIX 10 10 GLY A 187 GLY A 198 1 12 HELIX 11 11 LYS A 201 SER A 207 5 7 HELIX 12 12 GLU A 209 ARG A 230 1 22 HELIX 13 13 ASN A 257 ASP A 277 1 21 HELIX 14 14 SER A 307 ASP A 326 1 20 HELIX 15 15 TYR B 1010 ASN B 1020 1 11 HELIX 16 16 PRO B 1021 LYS B 1024 5 4 HELIX 17 17 ASN B 1047 GLY B 1054 1 8 HELIX 18 18 PRO B 1060 LEU B 1068 1 9 HELIX 19 19 ARG B 1077 SER B 1096 1 20 HELIX 20 20 ASP B 1117 LYS B 1137 1 21 HELIX 21 21 ASN B 1147 LYS B 1159 1 13 HELIX 22 22 ASP B 1167 LEU B 1178 1 12 HELIX 23 23 ASP B 1179 VAL B 1183 5 5 HELIX 24 24 GLY B 1187 GLY B 1198 1 12 HELIX 25 25 LYS B 1201 LEU B 1206 5 6 HELIX 26 26 GLU B 1209 GLY B 1218 1 10 HELIX 27 27 GLY B 1218 ARG B 1230 1 13 HELIX 28 28 ASN B 1257 LEU B 1276 1 20 HELIX 29 29 SER B 1307 ASP B 1326 1 20 SHEET 1 A 5 ILE A 99 ILE A 101 0 SHEET 2 A 5 GLU A 106 ASP A 110 -1 O TYR A 108 N GLU A 100 SHEET 3 A 5 VAL A 3 PHE A 8 -1 N LEU A 4 O LEU A 109 SHEET 4 A 5 VAL A 140 SER A 145 -1 O THR A 141 N ASP A 7 SHEET 5 A 5 ILE A 163 VAL A 165 1 O LYS A 164 N ILE A 144 SHEET 1 B 3 GLY A 41 ALA A 46 0 SHEET 2 B 3 VAL A 28 PHE A 33 -1 N VAL A 32 O ALA A 42 SHEET 3 B 3 VAL A 72 PRO A 75 1 O LEU A 74 N CYS A 31 SHEET 1 C 4 SER A 244 SER A 255 0 SHEET 2 C 4 ILE A 330 PHE A 340 -1 O PHE A 337 N ILE A 245 SHEET 3 C 4 PRO A 281 THR A 290 -1 N VAL A 289 O ARG A 331 SHEET 4 C 4 ILE A 295 THR A 301 -1 O ARG A 298 N VAL A 286 SHEET 1 D 5 ILE B1099 SER B1103 0 SHEET 2 D 5 GLU B1106 ASP B1110 -1 O TYR B1108 N GLU B1100 SHEET 3 D 5 VAL B1003 PHE B1008 -1 N VAL B1006 O ALA B1107 SHEET 4 D 5 VAL B1140 SER B1145 -1 O GLY B1143 N PHE B1005 SHEET 5 D 5 ILE B1163 VAL B1165 1 O LYS B1164 N ILE B1144 SHEET 1 E 3 GLY B1041 ALA B1046 0 SHEET 2 E 3 VAL B1028 PHE B1033 -1 N VAL B1032 O ALA B1042 SHEET 3 E 3 VAL B1072 PRO B1075 1 O LEU B1074 N CYS B1031 SHEET 1 F 4 SER B1244 SER B1255 0 SHEET 2 F 4 ILE B1330 PHE B1340 -1 O PHE B1337 N ILE B1245 SHEET 3 F 4 PRO B1281 THR B1290 -1 N VAL B1289 O ARG B1331 SHEET 4 F 4 ILE B1295 THR B1301 -1 O VAL B1296 N ALA B1288 LINK O3' DG D 813 P DOC D 814 1555 1555 1.60 LINK O3' DC E 905 P 8OG E 906 1555 1555 1.59 LINK O3' 8OG E 906 P DC E 907 1555 1555 1.61 LINK O3' DG H1813 P DOC H1814 1555 1555 1.61 LINK O3' DC J1905 P 8OG J1906 1555 1555 1.57 LINK O3' 8OG J1906 P DC J1907 1555 1555 1.61 LINK CA CA D 416 O HOH D 505 1555 1555 2.88 LINK CA CA D 416 O HOH D 506 1555 1555 2.37 LINK CA CA D 416 O HOH D 509 1555 1555 2.28 LINK CA CA D 416 O HOH E 504 1555 1555 2.56 LINK CA CA D 416 O HOH E 507 1555 1555 2.70 LINK CA CA D 416 O HOH E 508 1555 1555 2.74 LINK OP1 DOC D 814 CA CA A 415 1555 1555 2.91 LINK O HOH H1504 CA CA J1416 1555 1555 2.33 LINK O HOH H1506 CA CA J1416 1555 1555 3.22 LINK O HOH H1508 CA CA J1416 1555 1555 2.55 LINK O HOH H1509 CA CA J1416 1555 1555 2.34 LINK OP1 DOC H1814 CA CA B1415 1555 1555 2.57 LINK CA CA J1416 O HOH J1507 1555 1555 3.01 LINK OD2 ASP A 7 CA CA A 415 1555 1555 2.58 LINK OD1 ASP A 7 CA CA A 415 1555 1555 3.39 LINK OD2 ASP A 105 CA CA A 415 1555 1555 2.71 LINK CA CA A 415 O HOH A 501 1555 1555 2.67 LINK CA CA A 415 O HOH A 502 1555 1555 1.70 LINK CA CA A 415 O HOH A 503 1555 1555 1.89 LINK CA CA A 415 O HOH A 537 1555 1555 2.41 LINK CA CA A 415 O HOH A 547 1555 1555 2.86 LINK OD2 ASP B1007 CA CA B1415 1555 1555 2.33 LINK OD2 ASP B1105 CA CA B1415 1555 1555 2.32 LINK OD1 ASP B1105 CA CA B1415 1555 1555 2.93 LINK OE1 GLU B1106 CA CA B1415 1555 1555 3.02 LINK CA CA B1415 O HOH B1501 1555 1555 2.62 LINK CA CA B1415 O HOH B1503 1555 1555 2.93 SITE 1 AC1 8 ASP A 7 ASP A 105 HOH A 501 HOH A 502 SITE 2 AC1 8 HOH A 503 HOH A 537 HOH A 547 DOC D 814 SITE 1 AC2 6 HOH D 505 HOH D 506 HOH D 509 HOH E 504 SITE 2 AC2 6 HOH E 507 HOH E 508 SITE 1 AC3 6 ASP B1007 ASP B1105 GLU B1106 HOH B1501 SITE 2 AC3 6 HOH B1503 DOC H1814 SITE 1 AC4 4 HOH H1504 HOH H1508 HOH H1509 HOH J1507 CRYST1 73.218 101.024 84.925 90.00 97.16 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013658 0.000000 0.001716 0.00000 SCALE2 0.000000 0.009899 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011868 0.00000