PDB Short entry for 2AVG HEADER STRUCTURAL PROTEIN 30-AUG-05 2AVG TITLE NMR STRUCTURE OF CC1 DOMAIN FROM HUMAN CARDIAC MYOSIN BINDING PROTEIN TITLE 2 C COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYOSIN-BINDING PROTEIN C, CARDIAC-TYPE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CC1 DOMAIN; COMPND 5 SYNONYM: CARDIAC MYBP-C, C-PROTEIN, CARDIAC MUSCLE ISOFORM; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21*; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-8A KEYWDS HUMAN CARDIAC MYBP-C, STRUCTURAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 29 AUTHOR A.ABABOU,M.GAUTEL,M.PFUHL REVDAT 6 14-JUN-23 2AVG 1 REMARK REVDAT 5 26-FEB-20 2AVG 1 REMARK SEQADV REVDAT 4 09-JUN-09 2AVG 1 REVDAT REVDAT 3 24-FEB-09 2AVG 1 VERSN REVDAT 2 13-JAN-09 2AVG 1 JRNL REVDAT 1 05-SEP-06 2AVG 0 JRNL AUTH A.ABABOU,E.ROSTKOVA,S.MISTRY,C.LE MASURIER,M.GAUTEL,M.PFUHL JRNL TITL MYOSIN BINDING PROTEIN C POSITIONED TO PLAY A KEY ROLE IN JRNL TITL 2 REGULATION OF MUSCLE CONTRACTION: STRUCTURE AND INTERACTIONS JRNL TITL 3 OF DOMAIN C1. JRNL REF J.MOL.BIOL. V. 384 615 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18926831 JRNL DOI 10.1016/J.JMB.2008.09.065 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 290302, ARIA 1.2 REMARK 3 AUTHORS : DELAGLIO F. (NMRPIPE), LINGE J. & NILGES M. (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2AVG COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-SEP-05. REMARK 100 THE DEPOSITION ID IS D_1000034360. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 0.1M REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8MM CC1 U-15N; 20MM PHOSPHATE REMARK 210 BUFFER; 90% H2O, 10% D2O; 0.8MM REMARK 210 CC1 U-15N, 13C; 20MM PHOSPHATE REMARK 210 BUFFER; 90% H2O, 10% D2O; 0.8MM REMARK 210 CC1 U-15N, 13C; 20MM PHOSPHATE REMARK 210 BUFFER; 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; UNITYINOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ANSIG 3.3, ARIA 1.2, AZARA 2.6 REMARK 210 METHOD USED : SIMULATED ANNEALING USING ARIA REMARK 210 PROGRAM REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 40 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 29 REMARK 210 CONFORMERS, SELECTION CRITERIA : NO NOE VIOLATION > 0.5 A REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-29 REMARK 465 RES C SSSEQI REMARK 465 MET A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 SER A -3 REMARK 465 SER A -2 REMARK 465 MET A -1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ3 TRP A 41 HZ PHE A 102 1.14 REMARK 500 HB3 TRP A 41 HD12 LEU A 49 1.29 REMARK 500 HB3 GLU A 15 HE2 HIS A 107 1.31 REMARK 500 HA2 GLY A 44 HA2 GLY A 85 1.33 REMARK 500 HD23 LEU A 49 HD23 LEU A 57 1.34 REMARK 500 OD2 ASP A 2 HZ2 LYS A 94 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 5 PHE A 83 CE1 PHE A 83 CZ 0.157 REMARK 500 5 PHE A 83 CZ PHE A 83 CE2 -0.137 REMARK 500 6 PHE A 83 CE1 PHE A 83 CZ 0.128 REMARK 500 6 PHE A 83 CZ PHE A 83 CE2 -0.114 REMARK 500 11 PHE A 83 CE1 PHE A 83 CZ 0.148 REMARK 500 11 PHE A 83 CZ PHE A 83 CE2 -0.133 REMARK 500 18 PHE A 83 CE1 PHE A 83 CZ 0.122 REMARK 500 20 TYR A 70 CE1 TYR A 70 CZ 0.087 REMARK 500 20 TYR A 70 CZ TYR A 70 CE2 -0.091 REMARK 500 21 TYR A 87 CE1 TYR A 87 CZ 0.083 REMARK 500 21 TYR A 87 CZ TYR A 87 CE2 -0.100 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 14 THR A 84 CA - CB - CG2 ANGL. DEV. = -10.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 13 -146.22 -68.23 REMARK 500 1 ALA A 31 -176.87 -50.68 REMARK 500 1 LYS A 45 -8.68 -42.62 REMARK 500 1 TRP A 46 -6.31 -162.09 REMARK 500 1 VAL A 53 94.02 -36.43 REMARK 500 1 ASP A 78 73.50 50.68 REMARK 500 1 THR A 84 90.63 -17.97 REMARK 500 1 LYS A 94 -77.32 23.20 REMARK 500 1 ASP A 95 -3.78 -144.17 REMARK 500 2 PRO A 3 86.91 -68.84 REMARK 500 2 ASP A 13 -150.48 -67.94 REMARK 500 2 ALA A 31 -174.22 59.96 REMARK 500 2 LYS A 45 -11.04 -45.23 REMARK 500 2 TRP A 46 -2.87 -164.18 REMARK 500 2 VAL A 53 96.05 -37.54 REMARK 500 2 ASP A 78 75.73 38.45 REMARK 500 2 THR A 84 98.51 -46.28 REMARK 500 2 LYS A 94 -73.12 18.61 REMARK 500 2 ASP A 95 1.23 -151.81 REMARK 500 2 ALA A 109 18.10 53.51 REMARK 500 3 PRO A 3 84.41 -67.37 REMARK 500 3 ASP A 13 -141.26 -71.42 REMARK 500 3 ALA A 31 -167.06 49.23 REMARK 500 3 TRP A 46 -13.59 157.85 REMARK 500 3 VAL A 53 95.78 -22.57 REMARK 500 3 ASP A 78 101.47 67.65 REMARK 500 3 LYS A 94 -60.48 -3.50 REMARK 500 3 ASP A 95 5.19 -163.93 REMARK 500 3 ALA A 109 -78.23 -88.26 REMARK 500 4 PRO A 3 83.58 -60.95 REMARK 500 4 ASP A 13 -147.19 -65.62 REMARK 500 4 ALA A 31 -172.26 56.10 REMARK 500 4 LYS A 45 -9.07 -44.37 REMARK 500 4 TRP A 46 -3.30 -167.67 REMARK 500 4 VAL A 53 95.09 -32.34 REMARK 500 4 THR A 84 94.25 -28.97 REMARK 500 4 LYS A 94 -73.52 17.92 REMARK 500 4 ASP A 95 1.97 -150.74 REMARK 500 4 GLU A 108 -74.30 -63.45 REMARK 500 5 PRO A 3 45.95 -69.03 REMARK 500 5 ASP A 13 -144.58 -68.33 REMARK 500 5 VAL A 18 107.45 -57.93 REMARK 500 5 ALA A 31 -143.98 47.09 REMARK 500 5 LEU A 33 147.53 171.00 REMARK 500 5 LYS A 45 -1.73 -45.47 REMARK 500 5 TRP A 46 -10.02 -166.03 REMARK 500 5 LYS A 52 -67.93 -94.11 REMARK 500 5 VAL A 53 93.20 12.80 REMARK 500 5 ASP A 78 78.24 39.38 REMARK 500 5 THR A 84 79.77 22.67 REMARK 500 REMARK 500 THIS ENTRY HAS 337 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 44 LYS A 45 3 138.95 REMARK 500 GLY A 44 LYS A 45 9 123.06 REMARK 500 GLY A 44 LYS A 45 13 137.30 REMARK 500 GLY A 85 GLY A 86 15 149.86 REMARK 500 GLY A 44 LYS A 45 16 134.41 REMARK 500 GLY A 44 LYS A 45 17 137.38 REMARK 500 GLY A 44 LYS A 45 22 139.55 REMARK 500 GLY A 44 LYS A 45 23 135.22 REMARK 500 GLY A 44 LYS A 45 27 132.16 REMARK 500 GLY A 44 LYS A 45 28 135.32 REMARK 500 GLY A 44 LYS A 45 29 -140.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 2 TYR A 70 0.06 SIDE CHAIN REMARK 500 13 TYR A 63 0.05 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 2 GLY A 44 10.16 REMARK 500 4 GLY A 44 10.99 REMARK 500 10 GLY A 44 10.51 REMARK 500 21 GLY A 44 10.27 REMARK 500 26 GLY A 44 10.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6015 RELATED DB: BMRB DBREF 2AVG A 1 110 UNP Q14896 MYPC3_HUMAN 151 260 SEQADV 2AVG MET A -10 UNP Q14896 EXPRESSION TAG SEQADV 2AVG HIS A -9 UNP Q14896 EXPRESSION TAG SEQADV 2AVG HIS A -8 UNP Q14896 EXPRESSION TAG SEQADV 2AVG HIS A -7 UNP Q14896 EXPRESSION TAG SEQADV 2AVG HIS A -6 UNP Q14896 EXPRESSION TAG SEQADV 2AVG HIS A -5 UNP Q14896 EXPRESSION TAG SEQADV 2AVG HIS A -4 UNP Q14896 EXPRESSION TAG SEQADV 2AVG SER A -3 UNP Q14896 EXPRESSION TAG SEQADV 2AVG SER A -2 UNP Q14896 EXPRESSION TAG SEQADV 2AVG MET A -1 UNP Q14896 EXPRESSION TAG SEQADV 2AVG GLY A 86 UNP Q14896 SER 236 SEE REMARK 999 SEQRES 1 A 120 MET HIS HIS HIS HIS HIS HIS SER SER MET ASP ASP PRO SEQRES 2 A 120 ILE GLY LEU PHE VAL MET ARG PRO GLN ASP GLY GLU VAL SEQRES 3 A 120 THR VAL GLY GLY SER ILE THR PHE SER ALA ARG VAL ALA SEQRES 4 A 120 GLY ALA SER LEU LEU LYS PRO PRO VAL VAL LYS TRP PHE SEQRES 5 A 120 LYS GLY LYS TRP VAL ASP LEU SER SER LYS VAL GLY GLN SEQRES 6 A 120 HIS LEU GLN LEU HIS ASP SER TYR ASP ARG ALA SER LYS SEQRES 7 A 120 VAL TYR LEU PHE GLU LEU HIS ILE THR ASP ALA GLN PRO SEQRES 8 A 120 ALA PHE THR GLY GLY TYR ARG CYS GLU VAL SER THR LYS SEQRES 9 A 120 ASP LYS PHE ASP CYS SER ASN PHE ASN LEU THR VAL HIS SEQRES 10 A 120 GLU ALA MET SHEET 1 A 4 PHE A 7 MET A 9 0 SHEET 2 A 4 SER A 21 ALA A 29 -1 O ARG A 27 N MET A 9 SHEET 3 A 4 VAL A 69 THR A 77 -1 O TYR A 70 N VAL A 28 SHEET 4 A 4 LEU A 57 ASP A 64 -1 N ASP A 64 O VAL A 69 SHEET 1 B 4 GLY A 14 THR A 17 0 SHEET 2 B 4 LYS A 96 HIS A 107 1 O HIS A 107 N VAL A 16 SHEET 3 B 4 GLY A 85 THR A 93 -1 N CYS A 89 O SER A 100 SHEET 4 B 4 VAL A 38 PHE A 42 -1 N VAL A 38 O SER A 92 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000