PDB Short entry for 2AVZ
HEADER    IMMUNE SYSTEM                           31-AUG-05   2AVZ              
TITLE     MODELED STRUCTURE OF HUMAN CD81 TETRASPANIN AND RECEPTOR              
TITLE    2 FOR HEPATITIS C VIRUS                                                
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: CD81 ANTIGEN;                                              
COMPND   3 CHAIN: A;                                                            
COMPND   4 SYNONYM: 26 KDA CELL SURFACE PROTEIN TAPA-1, TARGET OF THE           
COMPND   5 ANTIPROLIFERATIVE ANTIBODY 1, TETRASPANIN-28, TSPAN-28               
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN                                               
KEYWDS    TRANSMEMBRANE PROTEIN                                                 
EXPDTA    THEORETICAL MODEL                                                     
AUTHOR    M.SEIGNEURET                                                          
REVDAT   1   27-DEC-05 2AVZ    0                                                
JRNL        AUTH   M.SEIGNEURET                                                 
JRNL        TITL   COMPLETE PREDICTED THREE-DIMENSIONAL STRUCTURE OF            
JRNL        TITL 2 THE FACILITATOR TRANSMEMBRANE PROTEIN AND                    
JRNL        TITL 3 HEPATITIS C VIRUS RECEPTOR CD81: CONSERVED AND               
JRNL        TITL 4 VARIABLE STRUCTURAL DOMAINS IN THE TETRASPANIN               
JRNL        TITL 5 SUPERFAMILY                                                  
JRNL        REF    BIOPHYS.J.                    V.  90   212 2006              
JRNL        REFN   ASTM BIOJAU  US ISSN 0006-3495                               
REMARK   1                                                                      
REMARK   1 REFERENCE 1                                                          
REMARK   1  AUTH   K.KITADOKORO,D.BORDO,G.GALLI,R.PETRACCA,F.FALUGI,            
REMARK   1  AUTH 2 S.ABRIGNANI,G.GRANDI,M.BOLOGNESI                             
REMARK   1  TITL   CD81 EXTRACELLULAR DOMAIN 3D STRUCTURE: INSIGHT              
REMARK   1  TITL 2 INTO THE TETRASPANIN SUPERFAMILY STRUCTURAL MOTIFS           
REMARK   1  REF    EMBO J.                       V.  20    12 2001              
REMARK   1  REFN   ASTM EMJODG  UK ISSN 0261-4189                               
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : MODELLER 6.2                                         
REMARK   3   AUTHORS     : SALI, BLUNDELL                                       
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 2AVZ COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998                       
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-SEP-2005.                
REMARK 100 THE RCSB ID CODE IS RCSB034378.                                      
REMARK 220                                                                      
REMARK 220 EXPERIMENTAL DETAILS                                                 
REMARK 220  EXPERIMENT TYPE                : THEORETICAL MODELLING              
REMARK 220                                                                      
REMARK 220 REMARK: NULL                                                         
REMARK 225                                                                      
REMARK 225 THEORETICAL MODEL                                                    
REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE.           
REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND                
REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE                   
REMARK 225 RECORDS ARE MEANINGLESS.                                             
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS                                             
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI                             
REMARK 500   OE2  GLU A   219     OG   SER A   223              2.08            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS                                      
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),F6.3)                  
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991                                
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   RES CSSEQI ATM2   DEVIATION                     
REMARK 500    HIS A 151   NE2   HIS A 151   CD2   -0.070                        
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                       
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)              
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991                                
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                     
REMARK 500    LEU A  45   CA  -  CB  -  CG  ANGL. DEV. = 12.5 DEGREES           
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    LYS A  11      -58.43    141.31                                   
REMARK 500    THR A  42     -107.54     49.99                                   
REMARK 500    SER A  87      120.73     82.77                                   
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS                                         
REMARK 500                                                                      
REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH          
REMARK 500 CIS AND TRANS CONFORMATION.  CIS BONDS, IF ANY, ARE LISTED           
REMARK 500 ON CISPEP RECORDS.  TRANS IS DEFINED AS 180 +/- 30 AND               
REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES.                                  
REMARK 500                                 MODEL     OMEGA                      
REMARK 500 ALA A   54    PRO A   55                 -140.63                     
REMARK 650                                                                      
REMARK 650 HELIX                                                                
REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED                              
REMARK 700                                                                      
REMARK 700 SHEET                                                                
REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED                              
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 1G8Q   RELATED DB: PDB                                   
REMARK 900 THIS IS THE CRYSTALLOGRAPHICALLY DETERMINED EXTRACELLULAR            
REMARK 900 DOMAIN OF CD81 WHICH WAS USED FOR RESIDUES 115-198 OF THE            
REMARK 900 PRESENT CD81 MODEL                                                   
DBREF  2AVZ A    1   236  UNP    P60033   CD81_HUMAN       1    236             
SEQRES   1 A  236  MET GLY VAL GLU GLY CYS THR LYS CYS ILE LYS TYR LEU          
SEQRES   2 A  236  LEU PHE VAL PHE ASN PHE VAL PHE TRP LEU ALA GLY GLY          
SEQRES   3 A  236  VAL ILE LEU GLY VAL ALA LEU TRP LEU ARG HIS ASP PRO          
SEQRES   4 A  236  GLN THR THR ASN LEU LEU TYR LEU GLU LEU GLY ASP LYS          
SEQRES   5 A  236  PRO ALA PRO ASN THR PHE TYR VAL GLY ILE TYR ILE LEU          
SEQRES   6 A  236  ILE ALA VAL GLY ALA VAL MET MET PHE VAL GLY PHE LEU          
SEQRES   7 A  236  GLY CYS TYR GLY ALA ILE GLN GLU SER GLN CYS LEU LEU          
SEQRES   8 A  236  GLY THR PHE PHE THR CYS LEU VAL ILE LEU PHE ALA CYS          
SEQRES   9 A  236  GLU VAL ALA ALA GLY ILE TRP GLY PHE VAL ASN LYS ASP          
SEQRES  10 A  236  GLN ILE ALA LYS ASP VAL LYS GLN PHE TYR ASP GLN ALA          
SEQRES  11 A  236  LEU GLN GLN ALA VAL VAL ASP ASP ASP ALA ASN ASN ALA          
SEQRES  12 A  236  LYS ALA VAL VAL LYS THR PHE HIS GLU THR LEU ASP CYS          
SEQRES  13 A  236  CYS GLY SER SER THR LEU THR ALA LEU THR THR SER VAL          
SEQRES  14 A  236  LEU LYS ASN ASN LEU CYS PRO SER GLY SER ASN ILE ILE          
SEQRES  15 A  236  SER ASN LEU PHE LYS GLU ASP CYS HIS GLN LYS ILE ASP          
SEQRES  16 A  236  ASP LEU PHE SER GLY LYS LEU TYR LEU ILE GLY ILE ALA          
SEQRES  17 A  236  ALA ILE VAL VAL ALA VAL ILE MET ILE PHE GLU MET ILE          
SEQRES  18 A  236  LEU SER MET VAL LEU CYS CYS GLY ILE ARG ASN SER SER          
SEQRES  19 A  236  VAL TYR                                                      
HELIX    1   1 MET A    1  CYS A    9  1                                   9    
HELIX    2   2 TYR A   12  ASP A   38  1                                  27    
HELIX    3   3 ASN A   56  ALA A   83  1                                  28    
HELIX    4   4 GLN A   88  VAL A  136  1                                  49    
HELIX    5   5 ASN A  141  LEU A  154  1                                  14    
HELIX    6   6 THR A  163  LEU A  165  5                                   3    
HELIX    7   7 THR A  166  LYS A  171  1                                   6    
HELIX    8   8 ASN A  180  LEU A  185  1                                   6    
HELIX    9   9 CYS A  190  CYS A  228  1                                  39    
SHEET    1   A 1 ASN A  43  GLU A  48  0                                        
SSBOND   1 CYS A  156    CYS A  190                                             
SSBOND   2 CYS A  157    CYS A  175                                             
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000