PDB Short entry for 2AXV HEADER TRANSCRIPTION 06-SEP-05 2AXV TITLE STRUCTURE OF PRGX Y153C MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: PRGX; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECALIS; SOURCE 3 ORGANISM_TAXID: 1351; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS REPRESSOR, PHEROMONE, DNA BINDING, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR K.SHI,C.K.BROWN,Z.Y.GU,B.K.KOZLOWICZ,G.M.DUNNY,D.H.OHLENDORF, AUTHOR 2 C.A.EARHART REVDAT 5 14-FEB-24 2AXV 1 REMARK REVDAT 4 20-OCT-21 2AXV 1 SEQADV REVDAT 3 24-JUL-19 2AXV 1 REMARK REVDAT 2 24-FEB-09 2AXV 1 VERSN REVDAT 1 06-DEC-05 2AXV 0 JRNL AUTH K.SHI,C.K.BROWN,Z.Y.GU,B.K.KOZLOWICZ,G.M.DUNNY, JRNL AUTH 2 D.H.OHLENDORF,C.A.EARHART JRNL TITL STRUCTURE OF PEPTIDE SEX PHEROMONE RECEPTOR PRGX AND JRNL TITL 2 PRGX/PHEROMONE COMPLEXES AND REGULATION OF CONJUGATION IN JRNL TITL 3 ENTEROCOCCUS FAECALIS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 102 18596 2005 JRNL REFN ISSN 0027-8424 JRNL PMID 16339309 JRNL DOI 10.1073/PNAS.0506163102 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 34518 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.242 REMARK 3 R VALUE (WORKING SET) : 0.239 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1792 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2491 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3560 REMARK 3 BIN FREE R VALUE SET COUNT : 50 REMARK 3 BIN FREE R VALUE : 0.4010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9989 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 37 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 74.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 9.38000 REMARK 3 B22 (A**2) : -1.26000 REMARK 3 B33 (A**2) : -8.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.460 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.347 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.136 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 10197 ; 0.019 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 9273 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 13775 ; 1.708 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): 21711 ; 1.097 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1205 ; 6.061 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 484 ;40.486 ;24.959 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1940 ;21.495 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;19.940 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1561 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 11035 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 2017 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2989 ; 0.238 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 10364 ; 0.173 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 5297 ; 0.206 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): 6321 ; 0.101 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 559 ; 0.025 ; 0.050 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 8 ; 0.175 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 36 ; 0.202 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.031 ; 0.050 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 7666 ; 0.867 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2430 ; 0.115 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 9907 ; 0.994 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4797 ; 1.238 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3868 ; 1.908 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 3 A 296 2 REMARK 3 1 B 3 B 296 2 REMARK 3 1 C 3 C 296 2 REMARK 3 1 D 3 D 296 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 1745 ; 0.06 ; 0.05 REMARK 3 TIGHT POSITIONAL 1 B (A): 1745 ; 0.08 ; 0.05 REMARK 3 TIGHT POSITIONAL 1 C (A): 1745 ; 0.08 ; 0.05 REMARK 3 TIGHT POSITIONAL 1 D (A): 1745 ; 0.07 ; 0.05 REMARK 3 MEDIUM POSITIONAL 1 A (A): 2926 ; 0.60 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 B (A): 2926 ; 0.58 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 C (A): 2926 ; 0.57 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 D (A): 2926 ; 0.60 ; 0.50 REMARK 3 TIGHT THERMAL 1 A (A**2): 1745 ; 0.10 ; 0.50 REMARK 3 TIGHT THERMAL 1 B (A**2): 1745 ; 0.10 ; 0.50 REMARK 3 TIGHT THERMAL 1 C (A**2): 1745 ; 0.09 ; 0.50 REMARK 3 TIGHT THERMAL 1 D (A**2): 1745 ; 0.10 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 2926 ; 0.52 ; 2.00 REMARK 3 MEDIUM THERMAL 1 B (A**2): 2926 ; 0.50 ; 2.00 REMARK 3 MEDIUM THERMAL 1 C (A**2): 2926 ; 0.52 ; 2.00 REMARK 3 MEDIUM THERMAL 1 D (A**2): 2926 ; 0.51 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2AXV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-SEP-05. REMARK 100 THE DEPOSITION ID IS D_1000034443. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAR-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97940 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47514 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 45.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, CITRATE-PHOPHATE, PH 5.0, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.03800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 131.74000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.03800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 131.74000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.03800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.03800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 52720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -65.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 304 REMARK 465 ILE A 305 REMARK 465 GLU A 306 REMARK 465 ASN A 307 REMARK 465 ASN A 308 REMARK 465 PRO A 309 REMARK 465 ILE A 310 REMARK 465 PRO A 311 REMARK 465 GLU A 312 REMARK 465 ILE A 313 REMARK 465 LYS A 314 REMARK 465 GLU A 315 REMARK 465 GLN A 316 REMARK 465 SER A 317 REMARK 465 MET B 1 REMARK 465 ILE B 305 REMARK 465 GLU B 306 REMARK 465 ASN B 307 REMARK 465 ASN B 308 REMARK 465 PRO B 309 REMARK 465 ILE B 310 REMARK 465 PRO B 311 REMARK 465 GLU B 312 REMARK 465 ILE B 313 REMARK 465 LYS B 314 REMARK 465 GLU B 315 REMARK 465 GLN B 316 REMARK 465 SER B 317 REMARK 465 MET C 1 REMARK 465 ALA C 304 REMARK 465 ILE C 305 REMARK 465 GLU C 306 REMARK 465 ASN C 307 REMARK 465 ASN C 308 REMARK 465 PRO C 309 REMARK 465 ILE C 310 REMARK 465 PRO C 311 REMARK 465 GLU C 312 REMARK 465 ILE C 313 REMARK 465 LYS C 314 REMARK 465 GLU C 315 REMARK 465 GLN C 316 REMARK 465 SER C 317 REMARK 465 MET D 1 REMARK 465 ALA D 304 REMARK 465 ILE D 305 REMARK 465 GLU D 306 REMARK 465 ASN D 307 REMARK 465 ASN D 308 REMARK 465 PRO D 309 REMARK 465 ILE D 310 REMARK 465 PRO D 311 REMARK 465 GLU D 312 REMARK 465 ILE D 313 REMARK 465 LYS D 314 REMARK 465 GLU D 315 REMARK 465 GLN D 316 REMARK 465 SER D 317 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 271 CB ASP A 271 CG 0.149 REMARK 500 CYS C 153 CB CYS C 153 SG -0.104 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 233 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ILE B 134 CB - CA - C ANGL. DEV. = -14.0 DEGREES REMARK 500 ARG B 205 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 3 48.64 -87.93 REMARK 500 SER A 71 -31.98 -139.20 REMARK 500 PHE A 92 -72.26 -44.79 REMARK 500 ASN A 124 15.53 56.41 REMARK 500 LYS A 249 77.11 4.22 REMARK 500 LYS A 288 76.54 55.57 REMARK 500 PHE A 289 137.53 -173.64 REMARK 500 MET A 297 -76.57 -52.75 REMARK 500 TYR A 302 -70.66 -61.85 REMARK 500 ILE B 26 -48.44 -130.93 REMARK 500 SER B 71 -20.89 -142.92 REMARK 500 ASP B 90 -56.51 -28.97 REMARK 500 PHE B 92 -70.85 -48.04 REMARK 500 ARG B 205 19.04 58.38 REMARK 500 LYS B 249 73.12 15.48 REMARK 500 LYS B 288 75.82 56.90 REMARK 500 TYR B 302 21.74 -153.94 REMARK 500 VAL B 303 -51.45 -150.14 REMARK 500 LYS C 3 54.25 -95.57 REMARK 500 ILE C 26 -42.15 -133.53 REMARK 500 SER C 71 -30.69 -139.54 REMARK 500 PHE C 92 -77.04 -41.82 REMARK 500 ASN C 124 18.15 56.95 REMARK 500 LYS C 249 72.03 8.18 REMARK 500 LYS C 288 77.68 58.68 REMARK 500 PHE C 289 140.43 -170.29 REMARK 500 LYS D 3 49.39 -92.18 REMARK 500 ILE D 26 -47.28 -133.38 REMARK 500 SER D 71 -27.99 -140.46 REMARK 500 PHE D 92 -73.82 -43.24 REMARK 500 THR D 146 -33.45 -132.17 REMARK 500 ARG D 205 17.52 57.31 REMARK 500 LYS D 249 77.25 3.56 REMARK 500 LYS D 288 77.41 58.73 REMARK 500 PHE D 289 141.44 -170.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2AW6 RELATED DB: PDB REMARK 900 RELATED ID: 2AWI RELATED DB: PDB REMARK 900 RELATED ID: 2AXU RELATED DB: PDB REMARK 900 RELATED ID: 2AXZ RELATED DB: PDB DBREF 2AXV A 1 317 UNP Q04114 Q04114_ENTFA 1 317 DBREF 2AXV B 1 317 UNP Q04114 Q04114_ENTFA 1 317 DBREF 2AXV C 1 317 UNP Q04114 Q04114_ENTFA 1 317 DBREF 2AXV D 1 317 UNP Q04114 Q04114_ENTFA 1 317 SEQADV 2AXV CYS A 153 UNP Q04114 TYR 153 ENGINEERED MUTATION SEQADV 2AXV CYS B 153 UNP Q04114 TYR 153 ENGINEERED MUTATION SEQADV 2AXV CYS C 153 UNP Q04114 TYR 153 ENGINEERED MUTATION SEQADV 2AXV CYS D 153 UNP Q04114 TYR 153 ENGINEERED MUTATION SEQRES 1 A 317 MET PHE LYS ILE GLY SER VAL LEU LYS GLN ILE ARG GLN SEQRES 2 A 317 GLU LEU ASN TYR HIS GLN ILE ASP LEU TYR SER GLY ILE SEQRES 3 A 317 MET SER LYS SER VAL TYR ILE LYS VAL GLU ALA ASP SER SEQRES 4 A 317 ARG PRO ILE SER VAL GLU GLU LEU SER LYS PHE SER GLU SEQRES 5 A 317 ARG LEU GLY VAL ASN PHE PHE GLU ILE LEU ASN ARG ALA SEQRES 6 A 317 GLY MET ASN THR LYS SER VAL ASN GLU THR GLY LYS GLU SEQRES 7 A 317 LYS LEU LEU ILE SER LYS ILE PHE THR ASN PRO ASP LEU SEQRES 8 A 317 PHE ASP LYS ASN PHE GLN ARG ILE GLU PRO LYS ARG LEU SEQRES 9 A 317 THR SER LEU GLN TYR PHE SER ILE TYR LEU GLY TYR ILE SEQRES 10 A 317 SER ILE ALA HIS HIS TYR ASN ILE GLU VAL PRO THR PHE SEQRES 11 A 317 ASN LYS THR ILE THR SER ASP LEU LYS HIS LEU TYR ASP SEQRES 12 A 317 LYS ARG THR THR PHE PHE GLY ILE ASP CYS GLU ILE VAL SEQRES 13 A 317 SER ASN LEU LEU ASN VAL LEU PRO TYR GLU GLU VAL SER SEQRES 14 A 317 SER ILE ILE LYS PRO MET TYR PRO ILE VAL ASP SER PHE SEQRES 15 A 317 GLY LYS ASP TYR ASP LEU THR ILE GLN THR VAL LEU LYS SEQRES 16 A 317 ASN ALA LEU THR ILE SER ILE MET ASN ARG ASN LEU LYS SEQRES 17 A 317 GLU ALA GLN TYR TYR ILE ASN GLN PHE GLU HIS LEU LYS SEQRES 18 A 317 THR ILE LYS ASN ILE SER ILE ASN GLY TYR TYR ASP LEU SEQRES 19 A 317 GLU ILE ASN TYR LEU LYS GLN ILE TYR GLN PHE LEU THR SEQRES 20 A 317 ASP LYS ASN ILE ASP SER TYR LEU ASN ALA VAL ASN ILE SEQRES 21 A 317 ILE ASN ILE PHE LYS ILE ILE GLY LYS GLU ASP ILE HIS SEQRES 22 A 317 ARG SER LEU VAL GLU GLU LEU THR LYS ILE SER ALA LYS SEQRES 23 A 317 GLU LYS PHE THR PRO PRO LYS GLU VAL THR MET TYR TYR SEQRES 24 A 317 GLU ASN TYR VAL ALA ILE GLU ASN ASN PRO ILE PRO GLU SEQRES 25 A 317 ILE LYS GLU GLN SER SEQRES 1 B 317 MET PHE LYS ILE GLY SER VAL LEU LYS GLN ILE ARG GLN SEQRES 2 B 317 GLU LEU ASN TYR HIS GLN ILE ASP LEU TYR SER GLY ILE SEQRES 3 B 317 MET SER LYS SER VAL TYR ILE LYS VAL GLU ALA ASP SER SEQRES 4 B 317 ARG PRO ILE SER VAL GLU GLU LEU SER LYS PHE SER GLU SEQRES 5 B 317 ARG LEU GLY VAL ASN PHE PHE GLU ILE LEU ASN ARG ALA SEQRES 6 B 317 GLY MET ASN THR LYS SER VAL ASN GLU THR GLY LYS GLU SEQRES 7 B 317 LYS LEU LEU ILE SER LYS ILE PHE THR ASN PRO ASP LEU SEQRES 8 B 317 PHE ASP LYS ASN PHE GLN ARG ILE GLU PRO LYS ARG LEU SEQRES 9 B 317 THR SER LEU GLN TYR PHE SER ILE TYR LEU GLY TYR ILE SEQRES 10 B 317 SER ILE ALA HIS HIS TYR ASN ILE GLU VAL PRO THR PHE SEQRES 11 B 317 ASN LYS THR ILE THR SER ASP LEU LYS HIS LEU TYR ASP SEQRES 12 B 317 LYS ARG THR THR PHE PHE GLY ILE ASP CYS GLU ILE VAL SEQRES 13 B 317 SER ASN LEU LEU ASN VAL LEU PRO TYR GLU GLU VAL SER SEQRES 14 B 317 SER ILE ILE LYS PRO MET TYR PRO ILE VAL ASP SER PHE SEQRES 15 B 317 GLY LYS ASP TYR ASP LEU THR ILE GLN THR VAL LEU LYS SEQRES 16 B 317 ASN ALA LEU THR ILE SER ILE MET ASN ARG ASN LEU LYS SEQRES 17 B 317 GLU ALA GLN TYR TYR ILE ASN GLN PHE GLU HIS LEU LYS SEQRES 18 B 317 THR ILE LYS ASN ILE SER ILE ASN GLY TYR TYR ASP LEU SEQRES 19 B 317 GLU ILE ASN TYR LEU LYS GLN ILE TYR GLN PHE LEU THR SEQRES 20 B 317 ASP LYS ASN ILE ASP SER TYR LEU ASN ALA VAL ASN ILE SEQRES 21 B 317 ILE ASN ILE PHE LYS ILE ILE GLY LYS GLU ASP ILE HIS SEQRES 22 B 317 ARG SER LEU VAL GLU GLU LEU THR LYS ILE SER ALA LYS SEQRES 23 B 317 GLU LYS PHE THR PRO PRO LYS GLU VAL THR MET TYR TYR SEQRES 24 B 317 GLU ASN TYR VAL ALA ILE GLU ASN ASN PRO ILE PRO GLU SEQRES 25 B 317 ILE LYS GLU GLN SER SEQRES 1 C 317 MET PHE LYS ILE GLY SER VAL LEU LYS GLN ILE ARG GLN SEQRES 2 C 317 GLU LEU ASN TYR HIS GLN ILE ASP LEU TYR SER GLY ILE SEQRES 3 C 317 MET SER LYS SER VAL TYR ILE LYS VAL GLU ALA ASP SER SEQRES 4 C 317 ARG PRO ILE SER VAL GLU GLU LEU SER LYS PHE SER GLU SEQRES 5 C 317 ARG LEU GLY VAL ASN PHE PHE GLU ILE LEU ASN ARG ALA SEQRES 6 C 317 GLY MET ASN THR LYS SER VAL ASN GLU THR GLY LYS GLU SEQRES 7 C 317 LYS LEU LEU ILE SER LYS ILE PHE THR ASN PRO ASP LEU SEQRES 8 C 317 PHE ASP LYS ASN PHE GLN ARG ILE GLU PRO LYS ARG LEU SEQRES 9 C 317 THR SER LEU GLN TYR PHE SER ILE TYR LEU GLY TYR ILE SEQRES 10 C 317 SER ILE ALA HIS HIS TYR ASN ILE GLU VAL PRO THR PHE SEQRES 11 C 317 ASN LYS THR ILE THR SER ASP LEU LYS HIS LEU TYR ASP SEQRES 12 C 317 LYS ARG THR THR PHE PHE GLY ILE ASP CYS GLU ILE VAL SEQRES 13 C 317 SER ASN LEU LEU ASN VAL LEU PRO TYR GLU GLU VAL SER SEQRES 14 C 317 SER ILE ILE LYS PRO MET TYR PRO ILE VAL ASP SER PHE SEQRES 15 C 317 GLY LYS ASP TYR ASP LEU THR ILE GLN THR VAL LEU LYS SEQRES 16 C 317 ASN ALA LEU THR ILE SER ILE MET ASN ARG ASN LEU LYS SEQRES 17 C 317 GLU ALA GLN TYR TYR ILE ASN GLN PHE GLU HIS LEU LYS SEQRES 18 C 317 THR ILE LYS ASN ILE SER ILE ASN GLY TYR TYR ASP LEU SEQRES 19 C 317 GLU ILE ASN TYR LEU LYS GLN ILE TYR GLN PHE LEU THR SEQRES 20 C 317 ASP LYS ASN ILE ASP SER TYR LEU ASN ALA VAL ASN ILE SEQRES 21 C 317 ILE ASN ILE PHE LYS ILE ILE GLY LYS GLU ASP ILE HIS SEQRES 22 C 317 ARG SER LEU VAL GLU GLU LEU THR LYS ILE SER ALA LYS SEQRES 23 C 317 GLU LYS PHE THR PRO PRO LYS GLU VAL THR MET TYR TYR SEQRES 24 C 317 GLU ASN TYR VAL ALA ILE GLU ASN ASN PRO ILE PRO GLU SEQRES 25 C 317 ILE LYS GLU GLN SER SEQRES 1 D 317 MET PHE LYS ILE GLY SER VAL LEU LYS GLN ILE ARG GLN SEQRES 2 D 317 GLU LEU ASN TYR HIS GLN ILE ASP LEU TYR SER GLY ILE SEQRES 3 D 317 MET SER LYS SER VAL TYR ILE LYS VAL GLU ALA ASP SER SEQRES 4 D 317 ARG PRO ILE SER VAL GLU GLU LEU SER LYS PHE SER GLU SEQRES 5 D 317 ARG LEU GLY VAL ASN PHE PHE GLU ILE LEU ASN ARG ALA SEQRES 6 D 317 GLY MET ASN THR LYS SER VAL ASN GLU THR GLY LYS GLU SEQRES 7 D 317 LYS LEU LEU ILE SER LYS ILE PHE THR ASN PRO ASP LEU SEQRES 8 D 317 PHE ASP LYS ASN PHE GLN ARG ILE GLU PRO LYS ARG LEU SEQRES 9 D 317 THR SER LEU GLN TYR PHE SER ILE TYR LEU GLY TYR ILE SEQRES 10 D 317 SER ILE ALA HIS HIS TYR ASN ILE GLU VAL PRO THR PHE SEQRES 11 D 317 ASN LYS THR ILE THR SER ASP LEU LYS HIS LEU TYR ASP SEQRES 12 D 317 LYS ARG THR THR PHE PHE GLY ILE ASP CYS GLU ILE VAL SEQRES 13 D 317 SER ASN LEU LEU ASN VAL LEU PRO TYR GLU GLU VAL SER SEQRES 14 D 317 SER ILE ILE LYS PRO MET TYR PRO ILE VAL ASP SER PHE SEQRES 15 D 317 GLY LYS ASP TYR ASP LEU THR ILE GLN THR VAL LEU LYS SEQRES 16 D 317 ASN ALA LEU THR ILE SER ILE MET ASN ARG ASN LEU LYS SEQRES 17 D 317 GLU ALA GLN TYR TYR ILE ASN GLN PHE GLU HIS LEU LYS SEQRES 18 D 317 THR ILE LYS ASN ILE SER ILE ASN GLY TYR TYR ASP LEU SEQRES 19 D 317 GLU ILE ASN TYR LEU LYS GLN ILE TYR GLN PHE LEU THR SEQRES 20 D 317 ASP LYS ASN ILE ASP SER TYR LEU ASN ALA VAL ASN ILE SEQRES 21 D 317 ILE ASN ILE PHE LYS ILE ILE GLY LYS GLU ASP ILE HIS SEQRES 22 D 317 ARG SER LEU VAL GLU GLU LEU THR LYS ILE SER ALA LYS SEQRES 23 D 317 GLU LYS PHE THR PRO PRO LYS GLU VAL THR MET TYR TYR SEQRES 24 D 317 GLU ASN TYR VAL ALA ILE GLU ASN ASN PRO ILE PRO GLU SEQRES 25 D 317 ILE LYS GLU GLN SER FORMUL 5 HOH *37(H2 O) HELIX 1 1 LYS A 3 LEU A 15 1 13 HELIX 2 2 HIS A 18 SER A 24 1 7 HELIX 3 3 SER A 28 ALA A 37 1 10 HELIX 4 4 SER A 43 GLY A 55 1 13 HELIX 5 5 ASN A 57 ALA A 65 1 9 HELIX 6 6 ASN A 73 ASN A 88 1 16 HELIX 7 7 LEU A 91 ARG A 103 1 13 HELIX 8 8 SER A 106 TYR A 123 1 18 HELIX 9 9 VAL A 127 ASP A 143 1 17 HELIX 10 10 PHE A 149 ASN A 161 1 13 HELIX 11 11 PRO A 164 LYS A 173 1 10 HELIX 12 12 PRO A 174 TYR A 176 5 3 HELIX 13 13 GLY A 183 ASN A 204 1 22 HELIX 14 14 ASN A 206 LYS A 221 1 16 HELIX 15 15 ASN A 229 LYS A 249 1 21 HELIX 16 16 ASN A 250 ILE A 267 1 18 HELIX 17 17 LYS A 269 GLU A 287 1 19 HELIX 18 18 PRO A 292 VAL A 303 1 12 HELIX 19 19 LYS B 3 ASN B 16 1 14 HELIX 20 20 HIS B 18 SER B 24 1 7 HELIX 21 21 SER B 28 ALA B 37 1 10 HELIX 22 22 SER B 43 GLY B 55 1 13 HELIX 23 23 ASN B 57 ALA B 65 1 9 HELIX 24 24 ASN B 73 ASN B 88 1 16 HELIX 25 25 LEU B 91 ARG B 103 1 13 HELIX 26 26 SER B 106 TYR B 123 1 18 HELIX 27 27 VAL B 127 ASP B 143 1 17 HELIX 28 28 PHE B 149 ASN B 161 1 13 HELIX 29 29 PRO B 164 LYS B 173 1 10 HELIX 30 30 PRO B 174 TYR B 176 5 3 HELIX 31 31 GLY B 183 ASN B 204 1 22 HELIX 32 32 ASN B 206 LYS B 221 1 16 HELIX 33 33 ASN B 229 LYS B 249 1 21 HELIX 34 34 ASN B 250 ILE B 267 1 18 HELIX 35 35 LYS B 269 GLU B 287 1 19 HELIX 36 36 PRO B 292 VAL B 303 1 12 HELIX 37 37 LYS C 3 LEU C 15 1 13 HELIX 38 38 HIS C 18 SER C 24 1 7 HELIX 39 39 SER C 28 ALA C 37 1 10 HELIX 40 40 SER C 43 GLY C 55 1 13 HELIX 41 41 ASN C 57 ALA C 65 1 9 HELIX 42 42 ASN C 73 ASN C 88 1 16 HELIX 43 43 LEU C 91 ARG C 103 1 13 HELIX 44 44 SER C 106 TYR C 123 1 18 HELIX 45 45 VAL C 127 ASP C 143 1 17 HELIX 46 46 PHE C 149 LEU C 163 1 15 HELIX 47 47 PRO C 164 LYS C 173 1 10 HELIX 48 48 PRO C 174 TYR C 176 5 3 HELIX 49 49 GLY C 183 ASN C 204 1 22 HELIX 50 50 ASN C 206 ILE C 223 1 18 HELIX 51 51 ASN C 229 LYS C 249 1 21 HELIX 52 52 ASN C 250 ILE C 267 1 18 HELIX 53 53 LYS C 269 GLU C 287 1 19 HELIX 54 54 PRO C 292 VAL C 303 1 12 HELIX 55 55 LYS D 3 ASN D 16 1 14 HELIX 56 56 HIS D 18 SER D 24 1 7 HELIX 57 57 SER D 28 ALA D 37 1 10 HELIX 58 58 SER D 43 GLY D 55 1 13 HELIX 59 59 ASN D 57 ALA D 65 1 9 HELIX 60 60 ASN D 73 ASN D 88 1 16 HELIX 61 61 LEU D 91 ARG D 103 1 13 HELIX 62 62 SER D 106 TYR D 123 1 18 HELIX 63 63 VAL D 127 ASP D 143 1 17 HELIX 64 64 PHE D 149 ASN D 161 1 13 HELIX 65 65 PRO D 164 LYS D 173 1 10 HELIX 66 66 PRO D 174 TYR D 176 5 3 HELIX 67 67 GLY D 183 ASN D 204 1 22 HELIX 68 68 ASN D 206 LYS D 221 1 16 HELIX 69 69 ASN D 229 LYS D 249 1 21 HELIX 70 70 ASN D 250 ILE D 267 1 18 HELIX 71 71 LYS D 269 GLU D 287 1 19 HELIX 72 72 PRO D 292 VAL D 303 1 12 CISPEP 1 TYR A 176 PRO A 177 0 6.60 CISPEP 2 TYR B 176 PRO B 177 0 2.47 CISPEP 3 TYR C 176 PRO C 177 0 0.76 CISPEP 4 TYR D 176 PRO D 177 0 1.79 CRYST1 82.076 82.076 263.480 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012184 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012184 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003795 0.00000