PDB Short entry for 2AXY HEADER DNA BINDING PROTEIN/DNA 06-SEP-05 2AXY TITLE CRYSTAL STRUCTURE OF KH1 DOMAIN OF HUMAN POLY(C)-BINDING PROTEIN-2 TITLE 2 WITH C-RICH STRAND OF HUMAN TELOMERIC DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: C-RICH STRAND OF HUMAN TELOMERIC DNA; COMPND 3 CHAIN: E, F, G, H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: POLY(RC)-BINDING PROTEIN 2; COMPND 7 CHAIN: A, B, C, D; COMPND 8 FRAGMENT: KH1 DOMAIN OF HUMAN PCBP2 (RESIDUES 11-82); COMPND 9 SYNONYM: ALPHA-CP2, HNRNP-E2; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 5 ORGANISM_COMMON: HUMAN; SOURCE 6 ORGANISM_TAXID: 9606; SOURCE 7 GENE: PCBP2; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PET24A KEYWDS PROTEIN-DNA COMPLEX, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Z.DU,J.K.LEE,R.J.TJHEN,S.LI,R.M.STROUD,T.L.JAMES REVDAT 4 13-JUL-11 2AXY 1 VERSN REVDAT 3 24-FEB-09 2AXY 1 VERSN REVDAT 2 22-NOV-05 2AXY 1 JRNL REVDAT 1 27-SEP-05 2AXY 0 JRNL AUTH Z.DU,J.K.LEE,R.TJHEN,S.LI,H.PAN,R.M.STROUD,T.L.JAMES JRNL TITL CRYSTAL STRUCTURE OF THE FIRST KH DOMAIN OF HUMAN JRNL TITL 2 POLY(C)-BINDING PROTEIN-2 IN COMPLEX WITH A C-RICH STRAND OF JRNL TITL 3 HUMAN TELOMERIC DNA AT 1.7 A JRNL REF J.BIOL.CHEM. V. 280 38823 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 16186123 JRNL DOI 10.1074/JBC.M508183200 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 37143 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1995 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2584 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.29 REMARK 3 BIN R VALUE (WORKING SET) : 0.2860 REMARK 3 BIN FREE R VALUE SET COUNT : 122 REMARK 3 BIN FREE R VALUE : 0.3690 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2184 REMARK 3 NUCLEIC ACID ATOMS : 444 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 222 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.26000 REMARK 3 B22 (A**2) : 0.40000 REMARK 3 B33 (A**2) : -0.13000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.124 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.114 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.074 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.375 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2696 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3688 ; 1.585 ; 2.204 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 282 ; 4.810 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 80 ;36.838 ;24.500 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 468 ;13.369 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;23.085 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 434 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1767 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1184 ; 0.202 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1833 ; 0.299 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 201 ; 0.184 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 47 ; 0.150 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.135 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1461 ; 1.290 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2272 ; 1.522 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1467 ; 2.609 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1416 ; 3.729 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 81 REMARK 3 ORIGIN FOR THE GROUP (A): 46.0103 68.6136 29.1753 REMARK 3 T TENSOR REMARK 3 T11: -0.0780 T22: -0.0550 REMARK 3 T33: -0.0662 T12: 0.0068 REMARK 3 T13: -0.0136 T23: 0.0125 REMARK 3 L TENSOR REMARK 3 L11: 1.7588 L22: 1.1881 REMARK 3 L33: 2.2089 L12: -0.2927 REMARK 3 L13: 0.2703 L23: -0.4598 REMARK 3 S TENSOR REMARK 3 S11: 0.0107 S12: -0.2055 S13: -0.0228 REMARK 3 S21: 0.1731 S22: -0.0326 S23: -0.0821 REMARK 3 S31: 0.0242 S32: 0.2259 S33: 0.0218 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 12 B 82 REMARK 3 ORIGIN FOR THE GROUP (A): 57.5685 68.8092 15.4480 REMARK 3 T TENSOR REMARK 3 T11: -0.0742 T22: 0.0165 REMARK 3 T33: -0.0323 T12: 0.0101 REMARK 3 T13: 0.0000 T23: 0.0109 REMARK 3 L TENSOR REMARK 3 L11: 2.7059 L22: 2.9274 REMARK 3 L33: 1.2720 L12: -1.6133 REMARK 3 L13: -0.1327 L23: -0.6457 REMARK 3 S TENSOR REMARK 3 S11: 0.1069 S12: 0.1643 S13: 0.1302 REMARK 3 S21: -0.0848 S22: -0.1233 S23: -0.2014 REMARK 3 S31: -0.0747 S32: 0.1437 S33: 0.0163 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 10 C 81 REMARK 3 ORIGIN FOR THE GROUP (A): 26.4816 73.2473 10.5995 REMARK 3 T TENSOR REMARK 3 T11: -0.0615 T22: -0.0695 REMARK 3 T33: -0.0587 T12: 0.0303 REMARK 3 T13: -0.0117 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 2.0795 L22: 1.1576 REMARK 3 L33: 2.6570 L12: 0.0738 REMARK 3 L13: 0.8235 L23: 0.4650 REMARK 3 S TENSOR REMARK 3 S11: 0.0072 S12: 0.2254 S13: 0.0867 REMARK 3 S21: -0.1767 S22: -0.0580 S23: 0.0911 REMARK 3 S31: 0.0113 S32: -0.0369 S33: 0.0509 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 12 D 82 REMARK 3 ORIGIN FOR THE GROUP (A): 16.2685 78.8381 24.4559 REMARK 3 T TENSOR REMARK 3 T11: -0.0396 T22: -0.0645 REMARK 3 T33: -0.0528 T12: 0.0315 REMARK 3 T13: -0.0012 T23: 0.0085 REMARK 3 L TENSOR REMARK 3 L11: 2.6317 L22: 3.3292 REMARK 3 L33: 1.7182 L12: -0.4335 REMARK 3 L13: -0.1163 L23: 0.9733 REMARK 3 S TENSOR REMARK 3 S11: 0.0151 S12: -0.1687 S13: -0.0463 REMARK 3 S21: 0.0597 S22: 0.0041 S23: 0.0781 REMARK 3 S31: 0.0316 S32: -0.0432 S33: -0.0192 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 499 E 505 REMARK 3 ORIGIN FOR THE GROUP (A): 39.8379 62.6543 36.7351 REMARK 3 T TENSOR REMARK 3 T11: -0.0565 T22: -0.0664 REMARK 3 T33: -0.0596 T12: -0.0149 REMARK 3 T13: 0.0122 T23: 0.0394 REMARK 3 L TENSOR REMARK 3 L11: 4.5354 L22: 8.8820 REMARK 3 L33: 11.4934 L12: 5.4662 REMARK 3 L13: 2.1228 L23: 4.2818 REMARK 3 S TENSOR REMARK 3 S11: -0.2057 S12: -0.1242 S13: -0.3494 REMARK 3 S21: 0.2684 S22: 0.2484 S23: 0.3590 REMARK 3 S31: 0.1425 S32: -0.1654 S33: -0.0427 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 500 F 504 REMARK 3 ORIGIN FOR THE GROUP (A): 64.3230 63.5840 9.0415 REMARK 3 T TENSOR REMARK 3 T11: -0.0477 T22: 0.0773 REMARK 3 T33: -0.0534 T12: 0.1038 REMARK 3 T13: 0.0233 T23: 0.0376 REMARK 3 L TENSOR REMARK 3 L11: 11.3830 L22: 8.8650 REMARK 3 L33: 7.1056 L12: -6.7438 REMARK 3 L13: 2.8999 L23: -3.8676 REMARK 3 S TENSOR REMARK 3 S11: 0.1976 S12: 0.6836 S13: 0.0926 REMARK 3 S21: -0.2826 S22: -0.3577 S23: -0.7660 REMARK 3 S31: -0.1699 S32: 0.2348 S33: 0.1602 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : G 500 G 505 REMARK 3 ORIGIN FOR THE GROUP (A): 30.6163 64.0496 4.4309 REMARK 3 T TENSOR REMARK 3 T11: 0.0247 T22: -0.0067 REMARK 3 T33: -0.0171 T12: 0.0702 REMARK 3 T13: -0.0014 T23: -0.0441 REMARK 3 L TENSOR REMARK 3 L11: 2.0477 L22: 4.0031 REMARK 3 L33: 7.3349 L12: 0.2706 REMARK 3 L13: -0.8269 L23: -2.3850 REMARK 3 S TENSOR REMARK 3 S11: -0.1497 S12: 0.2205 S13: -0.5032 REMARK 3 S21: -0.2523 S22: 0.0266 S23: -0.2739 REMARK 3 S31: 0.4767 S32: 0.0827 S33: 0.1230 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 499 H 503 REMARK 3 ORIGIN FOR THE GROUP (A): 11.4697 75.5532 34.5349 REMARK 3 T TENSOR REMARK 3 T11: 0.1121 T22: 0.0627 REMARK 3 T33: -0.0429 T12: 0.0313 REMARK 3 T13: 0.0226 T23: 0.0742 REMARK 3 L TENSOR REMARK 3 L11: 13.2036 L22: 3.7408 REMARK 3 L33: 11.7450 L12: 4.9522 REMARK 3 L13: 3.2707 L23: 3.2276 REMARK 3 S TENSOR REMARK 3 S11: -0.0234 S12: -0.4544 S13: -0.6084 REMARK 3 S21: 0.8194 S22: 0.1958 S23: 0.4406 REMARK 3 S31: 0.5991 S32: -0.0556 S33: -0.1724 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2AXY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-SEP-05. REMARK 100 THE RCSB ID CODE IS RCSB034445. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-NOV-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979594 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : KOHZU: DOUBLE CRYSTAL SI(111) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39246 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 66.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : 0.09200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.88700 REMARK 200 R SYM FOR SHELL (I) : 0.88700 REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, CACODYLATE, ACETATE, PH 6.1, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 33.30150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 57.58800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.30150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 57.58800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 DA F 499 REMARK 465 DA F 505 REMARK 465 DA G 499 REMARK 465 DT H 504 REMARK 465 DA H 505 REMARK 465 ASP A 82 REMARK 465 LYS B 10 REMARK 465 ASN B 11 REMARK 465 ASP C 82 REMARK 465 LYS D 10 REMARK 465 ASN D 11 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DA F 500 P OP1 OP2 REMARK 470 DA G 500 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 114 O HOH B 116 1.75 REMARK 500 O HOH B 114 O HOH B 115 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT G 504 C5 DT G 504 C7 0.041 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA E 499 O4' - C1' - N9 ANGL. DEV. = 4.1 DEGREES REMARK 500 DC E 502 O4' - C1' - N1 ANGL. DEV. = 3.8 DEGREES REMARK 500 DT E 504 C1' - O4' - C4' ANGL. DEV. = -6.4 DEGREES REMARK 500 DT E 504 O4' - C1' - N1 ANGL. DEV. = 7.0 DEGREES REMARK 500 DT E 504 C6 - C5 - C7 ANGL. DEV. = -3.9 DEGREES REMARK 500 DA E 505 O4' - C1' - N9 ANGL. DEV. = 3.6 DEGREES REMARK 500 DC F 502 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DC G 501 N1 - C1' - C2' ANGL. DEV. = 8.8 DEGREES REMARK 500 DC G 501 O4' - C1' - N1 ANGL. DEV. = -5.5 DEGREES REMARK 500 DC G 502 O4' - C1' - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 DC G 501 C3' - O3' - P ANGL. DEV. = 17.8 DEGREES REMARK 500 DA G 505 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DC H 501 O4' - C1' - N1 ANGL. DEV. = -5.5 DEGREES REMARK 500 DC H 502 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 32 19.15 54.63 REMARK 500 LYS D 32 18.03 59.05 REMARK 500 GLU D 81 62.14 117.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ASP B 82 23.0 L L OUTSIDE RANGE REMARK 500 GLU D 81 24.7 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL DBREF 2AXY A 11 82 UNP Q15366 PCBP2_HUMAN 11 82 DBREF 2AXY B 11 82 UNP Q15366 PCBP2_HUMAN 11 82 DBREF 2AXY C 11 82 UNP Q15366 PCBP2_HUMAN 11 82 DBREF 2AXY D 11 82 UNP Q15366 PCBP2_HUMAN 11 82 DBREF 2AXY E 499 505 PDB 2AXY 2AXY 499 505 DBREF 2AXY F 499 505 PDB 2AXY 2AXY 499 505 DBREF 2AXY G 499 505 PDB 2AXY 2AXY 499 505 DBREF 2AXY H 499 505 PDB 2AXY 2AXY 499 505 SEQADV 2AXY LYS A 10 UNP Q15366 CLONING ARTIFACT SEQADV 2AXY MSE A 20 UNP Q15366 MET 20 MODIFIED RESIDUE SEQADV 2AXY MSE A 39 UNP Q15366 MET 39 MODIFIED RESIDUE SEQADV 2AXY MSE A 74 UNP Q15366 MET 74 MODIFIED RESIDUE SEQADV 2AXY LYS B 10 UNP Q15366 CLONING ARTIFACT SEQADV 2AXY MSE B 20 UNP Q15366 MET 20 MODIFIED RESIDUE SEQADV 2AXY MSE B 39 UNP Q15366 MET 39 MODIFIED RESIDUE SEQADV 2AXY MSE B 74 UNP Q15366 MET 74 MODIFIED RESIDUE SEQADV 2AXY LYS C 10 UNP Q15366 CLONING ARTIFACT SEQADV 2AXY MSE C 20 UNP Q15366 MET 20 MODIFIED RESIDUE SEQADV 2AXY MSE C 39 UNP Q15366 MET 39 MODIFIED RESIDUE SEQADV 2AXY MSE C 74 UNP Q15366 MET 74 MODIFIED RESIDUE SEQADV 2AXY LYS D 10 UNP Q15366 CLONING ARTIFACT SEQADV 2AXY MSE D 20 UNP Q15366 MET 20 MODIFIED RESIDUE SEQADV 2AXY MSE D 39 UNP Q15366 MET 39 MODIFIED RESIDUE SEQADV 2AXY MSE D 74 UNP Q15366 MET 74 MODIFIED RESIDUE SEQRES 1 E 7 DA DA DC DC DC DT DA SEQRES 1 F 7 DA DA DC DC DC DT DA SEQRES 1 G 7 DA DA DC DC DC DT DA SEQRES 1 H 7 DA DA DC DC DC DT DA SEQRES 1 A 73 LYS ASN VAL THR LEU THR ILE ARG LEU LEU MSE HIS GLY SEQRES 2 A 73 LYS GLU VAL GLY SER ILE ILE GLY LYS LYS GLY GLU SER SEQRES 3 A 73 VAL LYS LYS MSE ARG GLU GLU SER GLY ALA ARG ILE ASN SEQRES 4 A 73 ILE SER GLU GLY ASN CYS PRO GLU ARG ILE ILE THR LEU SEQRES 5 A 73 ALA GLY PRO THR ASN ALA ILE PHE LYS ALA PHE ALA MSE SEQRES 6 A 73 ILE ILE ASP LYS LEU GLU GLU ASP SEQRES 1 B 73 LYS ASN VAL THR LEU THR ILE ARG LEU LEU MSE HIS GLY SEQRES 2 B 73 LYS GLU VAL GLY SER ILE ILE GLY LYS LYS GLY GLU SER SEQRES 3 B 73 VAL LYS LYS MSE ARG GLU GLU SER GLY ALA ARG ILE ASN SEQRES 4 B 73 ILE SER GLU GLY ASN CYS PRO GLU ARG ILE ILE THR LEU SEQRES 5 B 73 ALA GLY PRO THR ASN ALA ILE PHE LYS ALA PHE ALA MSE SEQRES 6 B 73 ILE ILE ASP LYS LEU GLU GLU ASP SEQRES 1 C 73 LYS ASN VAL THR LEU THR ILE ARG LEU LEU MSE HIS GLY SEQRES 2 C 73 LYS GLU VAL GLY SER ILE ILE GLY LYS LYS GLY GLU SER SEQRES 3 C 73 VAL LYS LYS MSE ARG GLU GLU SER GLY ALA ARG ILE ASN SEQRES 4 C 73 ILE SER GLU GLY ASN CYS PRO GLU ARG ILE ILE THR LEU SEQRES 5 C 73 ALA GLY PRO THR ASN ALA ILE PHE LYS ALA PHE ALA MSE SEQRES 6 C 73 ILE ILE ASP LYS LEU GLU GLU ASP SEQRES 1 D 73 LYS ASN VAL THR LEU THR ILE ARG LEU LEU MSE HIS GLY SEQRES 2 D 73 LYS GLU VAL GLY SER ILE ILE GLY LYS LYS GLY GLU SER SEQRES 3 D 73 VAL LYS LYS MSE ARG GLU GLU SER GLY ALA ARG ILE ASN SEQRES 4 D 73 ILE SER GLU GLY ASN CYS PRO GLU ARG ILE ILE THR LEU SEQRES 5 D 73 ALA GLY PRO THR ASN ALA ILE PHE LYS ALA PHE ALA MSE SEQRES 6 D 73 ILE ILE ASP LYS LEU GLU GLU ASP MODRES 2AXY MSE A 20 MET SELENOMETHIONINE MODRES 2AXY MSE A 39 MET SELENOMETHIONINE MODRES 2AXY MSE A 74 MET SELENOMETHIONINE MODRES 2AXY MSE B 20 MET SELENOMETHIONINE MODRES 2AXY MSE B 39 MET SELENOMETHIONINE MODRES 2AXY MSE B 74 MET SELENOMETHIONINE MODRES 2AXY MSE C 20 MET SELENOMETHIONINE MODRES 2AXY MSE C 39 MET SELENOMETHIONINE MODRES 2AXY MSE C 74 MET SELENOMETHIONINE MODRES 2AXY MSE D 20 MET SELENOMETHIONINE MODRES 2AXY MSE D 39 MET SELENOMETHIONINE MODRES 2AXY MSE D 74 MET SELENOMETHIONINE HET MSE A 20 8 HET MSE A 39 8 HET MSE A 74 8 HET MSE B 20 8 HET MSE B 39 8 HET MSE B 74 8 HET MSE C 20 8 HET MSE C 39 8 HET MSE C 74 8 HET MSE D 20 8 HET MSE D 39 8 HET MSE D 74 8 HETNAM MSE SELENOMETHIONINE FORMUL 5 MSE 12(C5 H11 N O2 SE) FORMUL 9 HOH *222(H2 O) HELIX 1 1 GLY A 22 GLY A 30 1 9 HELIX 2 2 GLY A 33 GLY A 44 1 12 HELIX 3 3 PRO A 64 GLU A 81 1 18 HELIX 4 4 GLY B 22 GLY B 30 1 9 HELIX 5 5 GLY B 33 GLY B 44 1 12 HELIX 6 6 THR B 65 GLU B 80 1 16 HELIX 7 7 GLY C 22 GLY C 30 1 9 HELIX 8 8 GLY C 33 GLY C 44 1 12 HELIX 9 9 PRO C 64 GLU C 81 1 18 HELIX 10 10 GLY D 22 GLY D 30 1 9 HELIX 11 11 GLY D 33 GLY D 44 1 12 HELIX 12 12 THR D 65 GLU D 80 1 16 SHEET 1 A 6 ARG A 46 ILE A 49 0 SHEET 2 A 6 GLU A 56 GLY A 63 -1 O THR A 60 N ASN A 48 SHEET 3 A 6 LEU A 14 HIS A 21 -1 N ILE A 16 O LEU A 61 SHEET 4 A 6 THR B 13 HIS B 21 -1 O LEU B 19 N ARG A 17 SHEET 5 A 6 GLU B 56 PRO B 64 -1 O ARG B 57 N MSE B 20 SHEET 6 A 6 ARG B 46 ILE B 49 -1 N ASN B 48 O THR B 60 SHEET 1 B 6 ARG C 46 ILE C 49 0 SHEET 2 B 6 GLU C 56 GLY C 63 -1 O THR C 60 N ASN C 48 SHEET 3 B 6 LEU C 14 HIS C 21 -1 N MSE C 20 O ARG C 57 SHEET 4 B 6 THR D 13 HIS D 21 -1 O ARG D 17 N LEU C 19 SHEET 5 B 6 GLU D 56 PRO D 64 -1 O ARG D 57 N MSE D 20 SHEET 6 B 6 ARG D 46 ILE D 49 -1 N ASN D 48 O THR D 60 LINK C LEU A 19 N MSE A 20 1555 1555 1.33 LINK C MSE A 20 N HIS A 21 1555 1555 1.33 LINK C LYS A 38 N MSE A 39 1555 1555 1.33 LINK C MSE A 39 N ARG A 40 1555 1555 1.32 LINK C ALA A 73 N MSE A 74 1555 1555 1.33 LINK C MSE A 74 N ILE A 75 1555 1555 1.32 LINK C LEU B 19 N MSE B 20 1555 1555 1.34 LINK C MSE B 20 N HIS B 21 1555 1555 1.33 LINK C LYS B 38 N MSE B 39 1555 1555 1.33 LINK C MSE B 39 N ARG B 40 1555 1555 1.33 LINK C ALA B 73 N MSE B 74 1555 1555 1.33 LINK C MSE B 74 N ILE B 75 1555 1555 1.33 LINK C LEU C 19 N MSE C 20 1555 1555 1.33 LINK C MSE C 20 N HIS C 21 1555 1555 1.33 LINK C LYS C 38 N MSE C 39 1555 1555 1.34 LINK C MSE C 39 N ARG C 40 1555 1555 1.32 LINK C ALA C 73 N MSE C 74 1555 1555 1.34 LINK C MSE C 74 N ILE C 75 1555 1555 1.33 LINK C LEU D 19 N MSE D 20 1555 1555 1.33 LINK C MSE D 20 N HIS D 21 1555 1555 1.33 LINK C LYS D 38 N MSE D 39 1555 1555 1.33 LINK C MSE D 39 N ARG D 40 1555 1555 1.33 LINK C ALA D 73 N MSE D 74 1555 1555 1.33 LINK C MSE D 74 N ILE D 75 1555 1555 1.33 CRYST1 66.603 115.176 45.525 90.00 90.00 90.00 P 21 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015014 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008682 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021966 0.00000