PDB Short entry for 2AYK HEADER METALLOPROTEASE 06-NOV-97 2AYK TITLE INHIBITOR-FREE CATALYTIC FRAGMENT OF HUMAN FIBROBLAST COLLAGENASE, TITLE 2 NMR, MINIMIZED AVERAGE STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: COLLAGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MMP-1, FIBROBLAST COLLAGENASE; COMPND 5 EC: 3.4.24.7; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 CELL_LINE: BL21; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET-21A(+); SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNOT-3A KEYWDS MATRIX METALLOPROTEINASE, HYDROLASE, METALLOPROTEASE, GLYCOPROTEIN EXPDTA SOLUTION NMR AUTHOR R.POWERS,F.J.MOY REVDAT 3 09-MAR-22 2AYK 1 REMARK LINK REVDAT 2 24-FEB-09 2AYK 1 VERSN REVDAT 1 25-FEB-98 2AYK 0 JRNL AUTH F.J.MOY,P.K.CHANDA,S.COSMI,M.R.PISANO,C.URBANO,J.WILHELM, JRNL AUTH 2 R.POWERS JRNL TITL HIGH-RESOLUTION SOLUTION STRUCTURE OF THE INHIBITOR-FREE JRNL TITL 2 CATALYTIC FRAGMENT OF HUMAN FIBROBLAST COLLAGENASE JRNL TITL 3 DETERMINED BY MULTIDIMENSIONAL NMR. JRNL REF BIOCHEMISTRY V. 37 1495 1998 JRNL REFN ISSN 0006-2960 JRNL PMID 9484219 JRNL DOI 10.1021/BI972181W REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH F.J.MOY,M.R.PISANO,P.K.CHANDA,C.URBANO,L.M.KILLAR,M.-L.SUNG, REMARK 1 AUTH 2 R.POWERS REMARK 1 TITL ASSIGNMENTS, SECONDARY STRUCTURE AND DYNAMICS OF THE REMARK 1 TITL 2 INHIBITOR-FREE CATALYTIC FRAGMENT OF HUMAN FIBROBLAST REMARK 1 TITL 3 COLLAGENASE REMARK 1 REF J.BIOMOL.NMR V. 1 9 1997 REMARK 1 REFN ISSN 0925-2738 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.84 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN THE REMARK 3 JRNL CITATION ABOVE. REMARK 4 REMARK 4 2AYK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000177800. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 10 MM TRIS BASE, 100 MM NACL, 5 REMARK 210 MM CACL2, 0.1 MM ZNCL2, 2MM NAN3, REMARK 210 10 MM DEUTERATED DTT, 90% H2O/ REMARK 210 10%D2O OR 100% D2O REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY; COSY; TOCSY; TRIPLE REMARK 210 -RESONANCE; ETC. REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AMX2600 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR REMARK 210 METHOD USED : HYBRID DISTANCE GEOMETRY REMARK 210 -DYNAMICAL SIMULATED ANNEALING REMARK 210 METHOD REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY, LOWEST REMARK 210 VIOLATIONS, CONSISTENT FOLD REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 RES C SSSEQI REMARK 465 VAL A 1 REMARK 465 LEU A 2 REMARK 465 THR A 3 REMARK 465 GLU A 4 REMARK 465 GLY A 5 REMARK 465 ASN A 6 REMARK 465 GLN A 164 REMARK 465 ASN A 165 REMARK 465 PRO A 166 REMARK 465 VAL A 167 REMARK 465 GLN A 168 REMARK 465 PRO A 169 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 23 0.45 -62.87 REMARK 500 PRO A 46 7.96 -65.91 REMARK 500 ASP A 75 66.01 -102.56 REMARK 500 PRO A 77 1.01 -64.01 REMARK 500 PRO A 87 97.44 -60.64 REMARK 500 ASP A 98 96.11 -69.03 REMARK 500 ARG A 108 -153.84 -60.27 REMARK 500 HIS A 128 170.67 -56.39 REMARK 500 TYR A 160 -60.56 -100.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 171 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 68 NE2 REMARK 620 2 ASP A 70 OD2 74.9 REMARK 620 3 HIS A 83 NE2 121.6 136.8 REMARK 620 4 HIS A 96 ND1 100.4 99.4 114.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 172 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 76 O REMARK 620 2 GLY A 78 O 65.0 REMARK 620 3 ASN A 80 O 153.1 92.2 REMARK 620 4 ASP A 98 OD2 97.7 161.6 102.8 REMARK 620 5 GLU A 101 OE2 111.2 136.2 95.0 53.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 170 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 118 NE2 REMARK 620 2 HIS A 122 NE2 93.5 REMARK 620 3 HIS A 128 NE2 118.5 89.6 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: ZNA REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: ZN BINDING SITE. REMARK 800 REMARK 800 SITE_IDENTIFIER: ZNB REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: ZN BINDING SITE. REMARK 800 REMARK 800 SITE_IDENTIFIER: CAB REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: CA BINDING SITE. REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 170 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 171 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 172 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1AYK RELATED DB: PDB DBREF 2AYK A 1 169 UNP P03956 MMP1_HUMAN 101 269 SEQRES 1 A 169 VAL LEU THR GLU GLY ASN PRO ARG TRP GLU GLN THR HIS SEQRES 2 A 169 LEU THR TYR ARG ILE GLU ASN TYR THR PRO ASP LEU PRO SEQRES 3 A 169 ARG ALA ASP VAL ASP HIS ALA ILE GLU LYS ALA PHE GLN SEQRES 4 A 169 LEU TRP SER ASN VAL THR PRO LEU THR PHE THR LYS VAL SEQRES 5 A 169 SER GLU GLY GLN ALA ASP ILE MET ILE SER PHE VAL ARG SEQRES 6 A 169 GLY ASP HIS ARG ASP ASN SER PRO PHE ASP GLY PRO GLY SEQRES 7 A 169 GLY ASN LEU ALA HIS ALA PHE GLN PRO GLY PRO GLY ILE SEQRES 8 A 169 GLY GLY ASP ALA HIS PHE ASP GLU ASP GLU ARG TRP THR SEQRES 9 A 169 ASN ASN PHE ARG GLU TYR ASN LEU HIS ARG VAL ALA ALA SEQRES 10 A 169 HIS GLU LEU GLY HIS SER LEU GLY LEU SER HIS SER THR SEQRES 11 A 169 ASP ILE GLY ALA LEU MET TYR PRO SER TYR THR PHE SER SEQRES 12 A 169 GLY ASP VAL GLN LEU ALA GLN ASP ASP ILE ASP GLY ILE SEQRES 13 A 169 GLN ALA ILE TYR GLY ARG SER GLN ASN PRO VAL GLN PRO HET ZN A 170 1 HET ZN A 171 1 HET CA A 172 1 HETNAM ZN ZINC ION HETNAM CA CALCIUM ION FORMUL 2 ZN 2(ZN 2+) FORMUL 4 CA CA 2+ HELIX 1 1 ARG A 27 ASN A 43 1 17 HELIX 2 2 LEU A 112 SER A 123 1 12 HELIX 3 3 GLN A 150 ILE A 159 1 10 SHEET 1 A 5 THR A 48 LYS A 51 0 SHEET 2 A 5 HIS A 13 ILE A 18 1 N LEU A 14 O THR A 48 SHEET 3 A 5 ILE A 59 VAL A 64 1 N ILE A 59 O ARG A 17 SHEET 4 A 5 ALA A 95 ASP A 98 1 N ALA A 95 O SER A 62 SHEET 5 A 5 ALA A 82 ALA A 84 -1 N HIS A 83 O HIS A 96 LINK NE2 HIS A 68 ZN ZN A 171 1555 1555 1.98 LINK OD2 ASP A 70 ZN ZN A 171 1555 1555 2.21 LINK O GLY A 76 CA CA A 172 1555 1555 2.89 LINK O GLY A 78 CA CA A 172 1555 1555 2.88 LINK O ASN A 80 CA CA A 172 1555 1555 2.90 LINK NE2 HIS A 83 ZN ZN A 171 1555 1555 2.09 LINK ND1 HIS A 96 ZN ZN A 171 1555 1555 2.12 LINK OD2 ASP A 98 CA CA A 172 1555 1555 2.90 LINK OE2 GLU A 101 CA CA A 172 1555 1555 2.88 LINK NE2 HIS A 118 ZN ZN A 170 1555 1555 2.06 LINK NE2 HIS A 122 ZN ZN A 170 1555 1555 2.01 LINK NE2 HIS A 128 ZN ZN A 170 1555 1555 2.11 SITE 1 ZNA 3 HIS A 118 HIS A 122 HIS A 128 SITE 1 ZNB 3 HIS A 68 HIS A 83 HIS A 96 SITE 1 CAB 3 GLY A 76 GLY A 78 ASN A 80 SITE 1 AC1 3 HIS A 118 HIS A 122 HIS A 128 SITE 1 AC2 4 HIS A 68 ASP A 70 HIS A 83 HIS A 96 SITE 1 AC3 5 GLY A 76 GLY A 78 ASN A 80 ASP A 98 SITE 2 AC3 5 GLU A 101 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000