PDB Short entry for 2B4M HEADER TRANSPORT PROTEIN 26-SEP-05 2B4M TITLE CRYSTAL STRUCTURE OF THE BINDING PROTEIN OPUAC IN COMPLEX WITH PROLINE TITLE 2 BETAINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCINE BETAINE-BINDING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: OPUAC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PBKB76 KEYWDS SUBSTRATE-BINDING PROTEIN, CLOSED LIGANDED, ABC-TRANSPORTER, KEYWDS 2 COMPATIBLE SOLUTES, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.HORN,L.SOHN-BOESSER,J.BREED,W.WELTE,L.SCHMITT,E.BREMER REVDAT 4 23-AUG-23 2B4M 1 REMARK REVDAT 3 13-JUL-11 2B4M 1 VERSN REVDAT 2 24-FEB-09 2B4M 1 VERSN REVDAT 1 21-MAR-06 2B4M 0 JRNL AUTH C.HORN,L.SOHN-BOESSER,J.BREED,W.WELTE,L.SCHMITT,E.BREMER JRNL TITL MOLECULAR DETERMINANTS FOR SUBSTRATE SPECIFICITY OF THE JRNL TITL 2 LIGAND-BINDING PROTEIN OPUAC FROM BACILLUS SUBTILIS FOR THE JRNL TITL 3 COMPATIBLE SOLUTES GLYCINE BETAINE AND PROLINE BETAINE. JRNL REF J.MOL.BIOL. V. 357 592 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16445940 JRNL DOI 10.1016/J.JMB.2005.12.085 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0000 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 82.4 REMARK 3 NUMBER OF REFLECTIONS : 10300 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 546 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 671 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3690 REMARK 3 BIN FREE R VALUE SET COUNT : 25 REMARK 3 BIN FREE R VALUE : 0.4100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4122 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.27000 REMARK 3 B22 (A**2) : -1.16000 REMARK 3 B33 (A**2) : 2.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 5.49000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.544 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.405 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 47.945 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.909 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.865 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4212 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5702 ; 1.133 ; 1.947 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 526 ; 5.759 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 162 ;39.522 ;25.926 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 770 ;19.143 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ; 9.138 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 634 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3072 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1807 ; 0.197 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 136 ; 0.140 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 45 ; 0.240 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.185 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2704 ; 0.226 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4242 ; 0.378 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1771 ; 0.549 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1460 ; 0.919 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 9 A 272 1 REMARK 3 1 B 9 B 272 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 2053 ; 0.02 ; 0.05 REMARK 3 TIGHT THERMAL 1 A (A**2): 2053 ; 0.04 ; 0.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 9 A 272 REMARK 3 ORIGIN FOR THE GROUP (A): 26.9030 0.0370 7.1210 REMARK 3 T TENSOR REMARK 3 T11: 0.2829 T22: 0.1465 REMARK 3 T33: 0.1333 T12: 0.0282 REMARK 3 T13: -0.1086 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 2.6778 L22: 1.1662 REMARK 3 L33: 0.9594 L12: 0.6295 REMARK 3 L13: 0.7075 L23: 0.2023 REMARK 3 S TENSOR REMARK 3 S11: 0.0132 S12: 0.1177 S13: -0.0278 REMARK 3 S21: -0.0270 S22: 0.0321 S23: -0.0972 REMARK 3 S31: -0.0155 S32: 0.0710 S33: -0.0453 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 9 B 272 REMARK 3 ORIGIN FOR THE GROUP (A): 14.7690 7.4510 46.7190 REMARK 3 T TENSOR REMARK 3 T11: 0.1903 T22: 0.3373 REMARK 3 T33: 0.1750 T12: -0.0293 REMARK 3 T13: -0.0970 T23: 0.0105 REMARK 3 L TENSOR REMARK 3 L11: 1.4809 L22: 1.5881 REMARK 3 L33: 2.2104 L12: -0.3098 REMARK 3 L13: 1.1193 L23: -0.3955 REMARK 3 S TENSOR REMARK 3 S11: 0.0960 S12: -0.2940 S13: 0.0279 REMARK 3 S21: 0.0598 S22: -0.0501 S23: -0.1686 REMARK 3 S31: 0.0410 S32: 0.1448 S33: -0.0459 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2B4M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-OCT-05. REMARK 100 THE DEPOSITION ID IS D_1000034668. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.25 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MPG/DESY, HAMBURG REMARK 200 BEAMLINE : BW6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.05 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10846 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 83.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 70.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.31200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 2B4L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS, AMMONIUM ACETATE, PEG 4000, PH REMARK 280 8.25, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 274K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 14.15900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 5 REMARK 465 GLU A 6 REMARK 465 ASN A 7 REMARK 465 ALA A 8 REMARK 465 ASP B 5 REMARK 465 GLU B 6 REMARK 465 ASN B 7 REMARK 465 ALA B 8 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG B 104 OE1 GLU B 110 1.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CD LYS A 140 OE2 GLU A 158 1565 1.89 REMARK 500 NH1 ARG B 63 OE2 GLU B 137 2556 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 39 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP A 243 CB - CG - OD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 ASP A 269 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP B 39 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP B 179 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP B 243 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP B 269 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 21 -147.25 -108.63 REMARK 500 ALA A 48 -116.15 -148.06 REMARK 500 PRO A 74 80.01 -52.73 REMARK 500 ASP A 88 75.32 -115.13 REMARK 500 ALA A 96 42.51 36.20 REMARK 500 ALA A 177 41.49 -79.79 REMARK 500 ILE B 21 -146.69 -108.79 REMARK 500 ALA B 48 -114.85 -150.88 REMARK 500 PRO B 74 78.29 -55.16 REMARK 500 ASP B 88 77.36 -116.19 REMARK 500 ALA B 96 40.11 38.68 REMARK 500 ALA B 177 40.74 -78.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PBE B 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PBE A 311 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2B4L RELATED DB: PDB DBREF 2B4M A 5 272 UNP P46922 OPUAC_BACSU 26 293 DBREF 2B4M B 5 272 UNP P46922 OPUAC_BACSU 26 293 SEQRES 1 A 268 ASP GLU ASN ALA SER ALA ALA GLU GLN VAL ASN LYS THR SEQRES 2 A 268 ILE ILE GLY ILE ASP PRO GLY SER GLY ILE MET SER LEU SEQRES 3 A 268 THR ASP LYS ALA MET LYS ASP TYR ASP LEU ASN ASP TRP SEQRES 4 A 268 THR LEU ILE SER ALA SER SER ALA ALA MET THR ALA THR SEQRES 5 A 268 LEU LYS LYS SER TYR ASP ARG LYS LYS PRO ILE ILE ILE SEQRES 6 A 268 THR GLY TRP THR PRO HIS TRP MET PHE SER ARG TYR LYS SEQRES 7 A 268 LEU LYS TYR LEU ASP ASP PRO LYS GLN SER TYR GLY SER SEQRES 8 A 268 ALA GLU GLU ILE HIS THR ILE THR ARG LYS GLY PHE SER SEQRES 9 A 268 LYS GLU GLN PRO ASN ALA ALA LYS LEU LEU SER GLN PHE SEQRES 10 A 268 LYS TRP THR GLN ASP GLU MET GLY GLU ILE MET ILE LYS SEQRES 11 A 268 VAL GLU GLU GLY GLU LYS PRO ALA LYS VAL ALA ALA GLU SEQRES 12 A 268 TYR VAL ASN LYS HIS LYS ASP GLN ILE ALA GLU TRP THR SEQRES 13 A 268 LYS GLY VAL GLN LYS VAL LYS GLY ASP LYS ILE ASN LEU SEQRES 14 A 268 ALA TYR VAL ALA TRP ASP SER GLU ILE ALA SER THR ASN SEQRES 15 A 268 VAL ILE GLY LYS VAL LEU GLU ASP LEU GLY TYR GLU VAL SEQRES 16 A 268 THR LEU THR GLN VAL GLU ALA GLY PRO MET TRP THR ALA SEQRES 17 A 268 ILE ALA THR GLY SER ALA ASP ALA SER LEU SER ALA TRP SEQRES 18 A 268 LEU PRO ASN THR HIS LYS ALA TYR ALA ALA LYS TYR LYS SEQRES 19 A 268 GLY LYS TYR ASP ASP ILE GLY THR SER MET THR GLY VAL SEQRES 20 A 268 LYS MET GLY LEU VAL VAL PRO GLN TYR MET LYS ASN VAL SEQRES 21 A 268 ASN SER ILE GLU ASP LEU LYS LYS SEQRES 1 B 268 ASP GLU ASN ALA SER ALA ALA GLU GLN VAL ASN LYS THR SEQRES 2 B 268 ILE ILE GLY ILE ASP PRO GLY SER GLY ILE MET SER LEU SEQRES 3 B 268 THR ASP LYS ALA MET LYS ASP TYR ASP LEU ASN ASP TRP SEQRES 4 B 268 THR LEU ILE SER ALA SER SER ALA ALA MET THR ALA THR SEQRES 5 B 268 LEU LYS LYS SER TYR ASP ARG LYS LYS PRO ILE ILE ILE SEQRES 6 B 268 THR GLY TRP THR PRO HIS TRP MET PHE SER ARG TYR LYS SEQRES 7 B 268 LEU LYS TYR LEU ASP ASP PRO LYS GLN SER TYR GLY SER SEQRES 8 B 268 ALA GLU GLU ILE HIS THR ILE THR ARG LYS GLY PHE SER SEQRES 9 B 268 LYS GLU GLN PRO ASN ALA ALA LYS LEU LEU SER GLN PHE SEQRES 10 B 268 LYS TRP THR GLN ASP GLU MET GLY GLU ILE MET ILE LYS SEQRES 11 B 268 VAL GLU GLU GLY GLU LYS PRO ALA LYS VAL ALA ALA GLU SEQRES 12 B 268 TYR VAL ASN LYS HIS LYS ASP GLN ILE ALA GLU TRP THR SEQRES 13 B 268 LYS GLY VAL GLN LYS VAL LYS GLY ASP LYS ILE ASN LEU SEQRES 14 B 268 ALA TYR VAL ALA TRP ASP SER GLU ILE ALA SER THR ASN SEQRES 15 B 268 VAL ILE GLY LYS VAL LEU GLU ASP LEU GLY TYR GLU VAL SEQRES 16 B 268 THR LEU THR GLN VAL GLU ALA GLY PRO MET TRP THR ALA SEQRES 17 B 268 ILE ALA THR GLY SER ALA ASP ALA SER LEU SER ALA TRP SEQRES 18 B 268 LEU PRO ASN THR HIS LYS ALA TYR ALA ALA LYS TYR LYS SEQRES 19 B 268 GLY LYS TYR ASP ASP ILE GLY THR SER MET THR GLY VAL SEQRES 20 B 268 LYS MET GLY LEU VAL VAL PRO GLN TYR MET LYS ASN VAL SEQRES 21 B 268 ASN SER ILE GLU ASP LEU LYS LYS HET PBE A 311 10 HET PBE B 310 10 HETNAM PBE 1,1-DIMETHYL-PROLINIUM HETSYN PBE PROLINE BETAINE FORMUL 3 PBE 2(C7 H14 N O2 1+) HELIX 1 1 SER A 9 ASN A 15 1 7 HELIX 2 2 SER A 25 TYR A 38 1 14 HELIX 3 3 SER A 49 LYS A 64 1 16 HELIX 4 4 TRP A 76 TYR A 81 1 6 HELIX 5 5 GLY A 106 GLN A 111 1 6 HELIX 6 6 GLN A 111 PHE A 121 1 11 HELIX 7 7 THR A 124 GLU A 137 1 14 HELIX 8 8 LYS A 140 ASN A 150 1 11 HELIX 9 9 HIS A 152 THR A 160 1 9 HELIX 10 10 TRP A 178 LEU A 195 1 18 HELIX 11 11 GLY A 207 THR A 215 1 9 HELIX 12 12 HIS A 230 TYR A 237 1 8 HELIX 13 13 SER A 266 LYS A 271 5 6 HELIX 14 14 SER B 9 ASN B 15 1 7 HELIX 15 15 SER B 25 TYR B 38 1 14 HELIX 16 16 SER B 49 ARG B 63 1 15 HELIX 17 17 TRP B 76 TYR B 81 1 6 HELIX 18 18 GLY B 106 GLN B 111 1 6 HELIX 19 19 GLN B 111 PHE B 121 1 11 HELIX 20 20 THR B 124 GLU B 137 1 14 HELIX 21 21 LYS B 140 ASN B 150 1 11 HELIX 22 22 HIS B 152 THR B 160 1 9 HELIX 23 23 TRP B 178 LEU B 195 1 18 HELIX 24 24 GLY B 207 THR B 215 1 9 HELIX 25 25 HIS B 230 TYR B 237 1 8 HELIX 26 26 SER B 266 LYS B 271 5 6 SHEET 1 A 2 THR A 17 ILE A 19 0 SHEET 2 A 2 THR A 44 ILE A 46 1 O ILE A 46 N ILE A 18 SHEET 1 B 3 ILE A 69 TRP A 72 0 SHEET 2 B 3 MET A 253 PRO A 258 -1 O GLY A 254 N GLY A 71 SHEET 3 B 3 LEU A 83 TYR A 85 -1 N LYS A 84 O VAL A 257 SHEET 1 C 5 GLU A 198 VAL A 204 0 SHEET 2 C 5 LYS A 170 VAL A 176 1 N LEU A 173 O THR A 200 SHEET 3 C 5 ALA A 220 LEU A 226 1 O ALA A 220 N ALA A 174 SHEET 4 C 5 GLU A 97 ARG A 104 -1 N HIS A 100 O ALA A 224 SHEET 5 C 5 TYR A 241 VAL A 251 -1 O GLY A 245 N THR A 101 SHEET 1 D 2 THR B 17 ILE B 19 0 SHEET 2 D 2 THR B 44 ILE B 46 1 O THR B 44 N ILE B 18 SHEET 1 E 3 ILE B 69 TRP B 72 0 SHEET 2 E 3 MET B 253 PRO B 258 -1 O VAL B 256 N ILE B 69 SHEET 3 E 3 LEU B 83 TYR B 85 -1 N LYS B 84 O VAL B 257 SHEET 1 F 5 GLU B 198 GLN B 203 0 SHEET 2 F 5 LYS B 170 TYR B 175 1 N LEU B 173 O THR B 200 SHEET 3 F 5 ALA B 220 LEU B 226 1 O ALA B 220 N ALA B 174 SHEET 4 F 5 GLU B 97 ARG B 104 -1 N HIS B 100 O ALA B 224 SHEET 5 F 5 TYR B 241 VAL B 251 -1 O GLY B 245 N THR B 101 CISPEP 1 LEU A 226 PRO A 227 0 1.80 CISPEP 2 LEU B 226 PRO B 227 0 0.37 SITE 1 AC1 8 ILE B 21 SER B 25 GLY B 26 ILE B 27 SITE 2 AC1 8 TRP B 72 TRP B 178 TRP B 225 THR B 229 SITE 1 AC2 7 SER A 25 GLY A 26 ILE A 27 TRP A 72 SITE 2 AC2 7 TRP A 178 TRP A 225 THR A 229 CRYST1 88.562 28.318 102.826 90.00 93.87 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011292 0.000000 0.000764 0.00000 SCALE2 0.000000 0.035313 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009747 0.00000