PDB Short entry for 2B9G HEADER LIGASE 11-OCT-05 2B9G TITLE IN SILICO ANALYSIS IDENTIFIES A NOVEL C3HC4 RING FINGER TITLE 2 DOMAIN OF AN E3 UBIQUITIN-PROTEIN LIGASE LOCATED AT THE C- TITLE 3 TERMINUS OF A POLYGLUTAMINE-CONTAINING PROTEIN (AJ277365, TITLE 4 AF525300, AY879229) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN C14ORF4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RING FINGER DOMAIN; COMPND 5 SYNONYM: E3 - RAT UBIQUITIN-PROTEIN LIGASE; COMPND 6 EC: 6.3.2.19 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN KEYWDS C3HC4-RING FINGER DOMAIN OF E3 EXPDTA THEORETICAL MODEL AUTHOR T.SCIOR REVDAT 1 29-NOV-05 2B9G 0 JRNL AUTH T.SCIOR,F.LUNA,C.MASTRONARDI,C.H.ROTH,S.R.OJEDA, JRNL AUTH 2 W.KOCH,J.F.SANCHEZ-RUIZ JRNL TITL IN SILICO ANALYSIS IDENTIFIES A NOVEL C3HC4 RING JRNL TITL 2 FI DOMAIN OF AN E3 UBIQUITIN-PROTEIN LIGASE JRNL TITL 3 LOCATED AT C-TERMINUS OF A JRNL TITL 4 POLYGLUTAMINE-CONTAINING PROTEIN, AJ277365, JRNL TITL 5 AF525300, AY879229 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SCWRL 3 REMARK 3 AUTHORS : A. A. CANUTESCU, A. A. SHELENKOV, AND R. L. REMARK 3 DUNBRACK, JR. A , HTTP://DUNBRACK.FCCC.EDU/ REMARK 3 SCWRL3.PHP REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2B9G COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-OCT-2005. REMARK 100 THE RCSB ID CODE IS RCSB034841. REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: HOMOLOGY MODELING MODELING PROGRAMS: WHAT-IF, SWISS-PDB REMARK 220 -VIEWER, REBUILT WITH THE MOLECULAR PACKAGE MOE. THIS REMARK 220 MODEL IS BASED UPON THE COORDINATES 1IYM (EL5 - RING-H2 REMARK 220 FINGER DOMAIN OF ORYZA SATIVA). REMOTE HOMOLOGY 3D-MODEL REMARK 220 WAS GENERATED MANUALLY AND REFINED BY MOE-AMBER94 AND BY REMARK 220 MOE-MMFF94 TO CURATE ZINC FINGER. REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 735 CA - C - N ANGL. DEV. = 17.6 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 724 160.25 94.01 REMARK 500 THR A 725 135.82 124.28 REMARK 500 VAL A 728 -59.11 31.16 REMARK 500 SER A 735 -111.72 176.86 REMARK 500 GLU A 762 -151.65 95.29 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 761 GLU A 762 -131.54 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1IYM RELATED DB: PDB REMARK 900 UBIQUITIN-LIGASE ACTIVITY, EL5. RING FINGER IS THE E2 REMARK 900 BINDING SITE OF EL5 REMARK 900 RELATED ID: 1BOR RELATED DB: PDB REMARK 900 RING FINGER DOMAIN FROM THE ACUTE PROMYELOCYTIC LEUKAEMIA REMARK 900 PROTO-ONCOPROTEIN REMARK 900 RELATED ID: 1RMD RELATED DB: PDB REMARK 900 RING FINGER DOMAIN FROM THE ACUTE PROMYELOCYTIC LEUKAEMIA REMARK 900 PROTO-ONCOPROTEIN DBREF 2B9G A 708 771 UNP Q9H1B7 CN004_HUMAN 708 771 SEQRES 1 A 64 ALA ASN SER GLY PRO LEU CYS CYS THR ILE CYS HIS GLU SEQRES 2 A 64 ARG LEU GLU ASP THR HIS PHE VAL GLN CYS PRO SER VAL SEQRES 3 A 64 PRO SER HIS LYS PHE CYS PHE PRO CYS SER ARG GLU SER SEQRES 4 A 64 ILE LYS ALA GLN GLY ALA THR GLY GLU VAL TYR CYS PRO SEQRES 5 A 64 SER GLY GLU LYS CYS PRO LEU VAL GLY SER ASN VAL HET ZN 1 1 HET ZN 2 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) HELIX 1 1 GLN A 729 VAL A 733 5 5 HELIX 2 2 CYS A 739 LYS A 748 1 10 CISPEP 1 SER A 735 HIS A 736 0 -7.48 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000