PDB Short entry for 2B9R HEADER CELL CYCLE 12-OCT-05 2B9R TITLE CRYSTAL STRUCTURE OF HUMAN CYCLIN B1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HUMAN CYCLIN B1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 165-433; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)CODONPLUS RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-28 A+ KEYWDS CYCLIN, CELL CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR R.BASAVAPPA,E.PETRI REVDAT 6 23-AUG-23 2B9R 1 REMARK REVDAT 5 20-OCT-21 2B9R 1 SEQADV REVDAT 4 13-JUL-11 2B9R 1 VERSN REVDAT 3 24-FEB-09 2B9R 1 VERSN REVDAT 2 19-JUN-07 2B9R 1 JRNL REVDAT 1 17-OCT-06 2B9R 0 JRNL AUTH E.T.PETRI,A.ERRICO,L.ESCOBEDO,T.HUNT,R.BASAVAPPA JRNL TITL THE CRYSTAL STRUCTURE OF HUMAN CYCLIN B. JRNL REF CELL CYCLE V. 6 1342 2007 JRNL REFN ISSN 1538-4101 JRNL PMID 17495533 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 16278 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.249 REMARK 3 R VALUE (WORKING SET) : 0.243 REMARK 3 FREE R VALUE : 0.308 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1773 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1153 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.69 REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : 131 REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3936 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 94 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 88.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 3.707 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.463 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.380 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 38.658 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.927 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.895 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4016 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5451 ; 1.363 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 507 ; 6.050 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 154 ;36.787 ;23.831 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 699 ;21.407 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;18.974 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 644 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2937 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2673 ; 0.316 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2869 ; 0.342 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 346 ; 0.297 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 56 ; 0.234 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.376 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2596 ; 4.653 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4084 ; 6.460 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1581 ; 3.634 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1367 ; 5.753 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : B A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 3 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 B 37 B 114 2 REMARK 3 1 A 37 A 114 2 REMARK 3 2 B 116 B 143 2 REMARK 3 2 A 116 A 143 2 REMARK 3 3 B 148 B 193 2 REMARK 3 3 A 148 A 193 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 B (A): 608 ; 0.05 ; 0.05 REMARK 3 MEDIUM POSITIONAL 1 B (A): 613 ; 0.55 ; 0.50 REMARK 3 TIGHT THERMAL 1 B (A**2): 608 ; 0.09 ; 0.50 REMARK 3 MEDIUM THERMAL 1 B (A**2): 613 ; 0.94 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 260 REMARK 3 ORIGIN FOR THE GROUP (A): -74.0010 59.4180 -5.7740 REMARK 3 T TENSOR REMARK 3 T11: -0.2930 T22: 0.5855 REMARK 3 T33: -0.0794 T12: 0.1088 REMARK 3 T13: 0.0156 T23: -0.3068 REMARK 3 L TENSOR REMARK 3 L11: 6.1005 L22: 4.7511 REMARK 3 L33: 3.5964 L12: -2.4978 REMARK 3 L13: -2.8549 L23: 2.0232 REMARK 3 S TENSOR REMARK 3 S11: -0.1790 S12: -1.7021 S13: 0.9551 REMARK 3 S21: 0.4525 S22: 0.6042 S23: -0.5360 REMARK 3 S31: 0.2905 S32: 0.5242 S33: -0.4252 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 7 B 260 REMARK 3 ORIGIN FOR THE GROUP (A): -57.8650 24.0120 -16.6940 REMARK 3 T TENSOR REMARK 3 T11: -0.2211 T22: 0.0522 REMARK 3 T33: -0.2794 T12: -0.0391 REMARK 3 T13: -0.1738 T23: -0.0762 REMARK 3 L TENSOR REMARK 3 L11: 3.7323 L22: 2.8750 REMARK 3 L33: 3.1790 L12: -1.2331 REMARK 3 L13: 0.7465 L23: -0.4303 REMARK 3 S TENSOR REMARK 3 S11: 0.2420 S12: -0.1280 S13: -0.1278 REMARK 3 S21: -0.0932 S22: 0.2272 S23: -0.2692 REMARK 3 S31: 0.3709 S32: 0.1411 S33: -0.4692 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2B9R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-OCT-05. REMARK 100 THE DEPOSITION ID IS D_1000034852. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-AUG-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 5 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.920 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18101 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 29.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 6.390 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.59 REMARK 200 R MERGE FOR SHELL (I) : 0.38000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1FIN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 8.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 131.79000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 65.89500 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 131.79000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 65.89500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 131.79000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 65.89500 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 131.79000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 65.89500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 311 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 1 REMARK 465 LEU A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 GLU A 5 REMARK 465 TYR A 6 REMARK 465 ASP A 261 REMARK 465 LEU A 262 REMARK 465 ALA A 263 REMARK 465 LYS A 264 REMARK 465 ALA A 265 REMARK 465 VAL A 266 REMARK 465 ALA A 267 REMARK 465 LYS A 268 REMARK 465 VAL A 269 REMARK 465 ASN B 1 REMARK 465 LEU B 2 REMARK 465 SER B 3 REMARK 465 SER B 4 REMARK 465 GLU B 5 REMARK 465 TYR B 6 REMARK 465 LEU B 262 REMARK 465 ALA B 263 REMARK 465 LYS B 264 REMARK 465 ALA B 265 REMARK 465 VAL B 266 REMARK 465 ALA B 267 REMARK 465 LYS B 268 REMARK 465 VAL B 269 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 8 CG CD CE NZ REMARK 470 ASP A 9 CG OD1 OD2 REMARK 470 ILE A 10 CG1 CG2 CD1 REMARK 470 TYR A 13 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 15 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 16 CG CD OE1 NE2 REMARK 470 GLN A 21 CG CD OE1 NE2 REMARK 470 LYS A 26 CG CD CE NZ REMARK 470 ASN A 36 CG OD1 ND2 REMARK 470 LYS A 78 CG CD CE NZ REMARK 470 ASN A 111 CG OD1 ND2 REMARK 470 PHE A 131 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 144 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 147 CG CD CE NZ REMARK 470 ASP A 152 CG OD1 OD2 REMARK 470 GLU A 196 CG CD OE1 OE2 REMARK 470 TRP A 197 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 197 CZ3 CH2 REMARK 470 THR A 200 OG1 CG2 REMARK 470 GLN A 202 CG CD OE1 NE2 REMARK 470 LEU A 205 CG CD1 CD2 REMARK 470 GLN A 217 CG CD OE1 NE2 REMARK 470 LYS A 232 CG CD CE NZ REMARK 470 ASN A 238 CG OD1 ND2 REMARK 470 LYS B 8 CG CD CE NZ REMARK 470 ASP B 9 CG OD1 OD2 REMARK 470 ILE B 10 CG1 CG2 CD1 REMARK 470 TYR B 13 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG B 15 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 16 CG CD OE1 NE2 REMARK 470 GLN B 21 CG CD OE1 NE2 REMARK 470 LYS B 26 CG CD CE NZ REMARK 470 LYS B 78 CG CD CE NZ REMARK 470 ASN B 111 CG OD1 ND2 REMARK 470 LYS B 115 CG CD CE NZ REMARK 470 PHE B 131 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP B 152 CG OD1 OD2 REMARK 470 ASN B 194 CB CG OD1 ND2 REMARK 470 GLU B 196 CG CD OE1 OE2 REMARK 470 ASN B 238 CG OD1 ND2 REMARK 470 LYS B 247 CG CD CE NZ REMARK 470 ASP B 261 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O MET A 70 N ASN A 72 1.58 REMARK 500 O MET B 70 N ASN B 72 1.63 REMARK 500 O LEU B 254 N SER B 256 1.94 REMARK 500 N SER B 178 O HOH B 308 1.96 REMARK 500 NZ LYS A 77 O HOH A 306 2.02 REMARK 500 NZ LYS B 124 O HOH B 283 2.02 REMARK 500 O LEU A 254 N SER A 256 2.08 REMARK 500 N GLY B 132 O HOH B 273 2.09 REMARK 500 O ALA B 257 N VAL B 259 2.12 REMARK 500 O MET B 163 OG1 THR B 166 2.12 REMARK 500 O ALA A 257 N VAL A 259 2.13 REMARK 500 NH2 ARG B 143 NZ LYS B 160 2.15 REMARK 500 CE MET B 79 O HOH B 317 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 7 N VAL A 7 CA 0.170 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 8 -107.24 85.45 REMARK 500 ASP A 9 -151.81 -87.17 REMARK 500 ILE A 10 -110.85 101.18 REMARK 500 ALA A 12 -85.49 -60.31 REMARK 500 TYR A 13 9.23 -58.19 REMARK 500 ALA A 19 -17.75 -44.19 REMARK 500 ALA A 22 -101.60 52.28 REMARK 500 VAL A 23 112.60 77.24 REMARK 500 ARG A 31 151.82 -49.42 REMARK 500 MET A 70 -84.96 -73.29 REMARK 500 GLN A 71 -6.82 -8.30 REMARK 500 ASP A 110 74.49 50.24 REMARK 500 LEU A 129 32.10 -79.76 REMARK 500 ASN A 130 19.26 43.89 REMARK 500 PHE A 131 85.85 74.24 REMARK 500 GLU A 150 174.84 71.05 REMARK 500 VAL A 151 -30.31 -145.80 REMARK 500 ASP A 152 128.26 -33.24 REMARK 500 TYR A 161 -70.48 -63.91 REMARK 500 MET A 172 26.45 -147.94 REMARK 500 SER A 178 -49.86 82.60 REMARK 500 ASN A 194 11.20 93.43 REMARK 500 TRP A 197 92.68 -58.57 REMARK 500 PRO A 199 8.44 -54.10 REMARK 500 SER A 206 77.80 0.07 REMARK 500 ALA A 220 -72.05 -53.12 REMARK 500 LYS A 221 -53.31 -25.82 REMARK 500 GLN A 228 -60.28 -161.48 REMARK 500 LEU A 230 -116.84 -92.80 REMARK 500 THR A 231 92.17 39.91 REMARK 500 HIS A 233 77.57 -109.04 REMARK 500 TYR A 240 31.21 -94.26 REMARK 500 LYS A 244 8.16 -67.14 REMARK 500 HIS A 245 20.85 -148.79 REMARK 500 LYS A 247 36.68 27.37 REMARK 500 THR A 250 64.20 -115.55 REMARK 500 PRO A 252 20.25 -57.76 REMARK 500 GLN A 253 -38.83 -34.36 REMARK 500 LEU A 254 26.86 -61.08 REMARK 500 ASN A 255 50.26 -50.97 REMARK 500 SER A 256 -2.89 65.85 REMARK 500 ALA A 257 35.95 32.87 REMARK 500 LEU A 258 25.00 22.17 REMARK 500 VAL A 259 118.30 26.64 REMARK 500 ASP B 9 -27.57 176.78 REMARK 500 ILE B 10 -81.92 -26.34 REMARK 500 ALA B 22 -119.36 53.36 REMARK 500 VAL B 23 108.65 82.59 REMARK 500 LEU B 29 -70.97 -5.40 REMARK 500 MET B 70 -85.26 -70.40 REMARK 500 REMARK 500 THIS ENTRY HAS 77 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 VAL A 7 15.53 REMARK 500 REMARK 500 REMARK: NULL DBREF 2B9R A 1 269 UNP P14635 CCNB1_HUMAN 165 433 DBREF 2B9R B 1 269 UNP P14635 CCNB1_HUMAN 165 433 SEQADV 2B9R SER A 3 UNP P14635 CYS 167 ENGINEERED MUTATION SEQADV 2B9R ALA A 19 UNP P14635 GLU 183 ENGINEERED MUTATION SEQADV 2B9R ALA A 20 UNP P14635 GLU 184 ENGINEERED MUTATION SEQADV 2B9R SER A 74 UNP P14635 CYS 238 ENGINEERED MUTATION SEQADV 2B9R SER A 186 UNP P14635 CYS 350 ENGINEERED MUTATION SEQADV 2B9R SER B 3 UNP P14635 CYS 167 ENGINEERED MUTATION SEQADV 2B9R ALA B 19 UNP P14635 GLU 183 ENGINEERED MUTATION SEQADV 2B9R ALA B 20 UNP P14635 GLU 184 ENGINEERED MUTATION SEQADV 2B9R SER B 74 UNP P14635 CYS 238 ENGINEERED MUTATION SEQADV 2B9R SER B 186 UNP P14635 CYS 350 ENGINEERED MUTATION SEQRES 1 A 269 ASN LEU SER SER GLU TYR VAL LYS ASP ILE TYR ALA TYR SEQRES 2 A 269 LEU ARG GLN LEU GLU ALA ALA GLN ALA VAL ARG PRO LYS SEQRES 3 A 269 TYR LEU LEU GLY ARG GLU VAL THR GLY ASN MET ARG ALA SEQRES 4 A 269 ILE LEU ILE ASP TRP LEU VAL GLN VAL GLN MET LYS PHE SEQRES 5 A 269 ARG LEU LEU GLN GLU THR MET TYR MET THR VAL SER ILE SEQRES 6 A 269 ILE ASP ARG PHE MET GLN ASN ASN SER VAL PRO LYS LYS SEQRES 7 A 269 MET LEU GLN LEU VAL GLY VAL THR ALA MET PHE ILE ALA SEQRES 8 A 269 SER LYS TYR GLU GLU MET TYR PRO PRO GLU ILE GLY ASP SEQRES 9 A 269 PHE ALA PHE VAL THR ASP ASN THR TYR THR LYS HIS GLN SEQRES 10 A 269 ILE ARG GLN MET GLU MET LYS ILE LEU ARG ALA LEU ASN SEQRES 11 A 269 PHE GLY LEU GLY ARG PRO LEU PRO LEU HIS PHE LEU ARG SEQRES 12 A 269 ARG ALA SER LYS ILE GLY GLU VAL ASP VAL GLU GLN HIS SEQRES 13 A 269 THR LEU ALA LYS TYR LEU MET GLU LEU THR MET LEU ASP SEQRES 14 A 269 TYR ASP MET VAL HIS PHE PRO PRO SER GLN ILE ALA ALA SEQRES 15 A 269 GLY ALA PHE SER LEU ALA LEU LYS ILE LEU ASP ASN GLY SEQRES 16 A 269 GLU TRP THR PRO THR LEU GLN HIS TYR LEU SER TYR THR SEQRES 17 A 269 GLU GLU SER LEU LEU PRO VAL MET GLN HIS LEU ALA LYS SEQRES 18 A 269 ASN VAL VAL MET VAL ASN GLN GLY LEU THR LYS HIS MET SEQRES 19 A 269 THR VAL LYS ASN LYS TYR ALA THR SER LYS HIS ALA LYS SEQRES 20 A 269 ILE SER THR LEU PRO GLN LEU ASN SER ALA LEU VAL GLN SEQRES 21 A 269 ASP LEU ALA LYS ALA VAL ALA LYS VAL SEQRES 1 B 269 ASN LEU SER SER GLU TYR VAL LYS ASP ILE TYR ALA TYR SEQRES 2 B 269 LEU ARG GLN LEU GLU ALA ALA GLN ALA VAL ARG PRO LYS SEQRES 3 B 269 TYR LEU LEU GLY ARG GLU VAL THR GLY ASN MET ARG ALA SEQRES 4 B 269 ILE LEU ILE ASP TRP LEU VAL GLN VAL GLN MET LYS PHE SEQRES 5 B 269 ARG LEU LEU GLN GLU THR MET TYR MET THR VAL SER ILE SEQRES 6 B 269 ILE ASP ARG PHE MET GLN ASN ASN SER VAL PRO LYS LYS SEQRES 7 B 269 MET LEU GLN LEU VAL GLY VAL THR ALA MET PHE ILE ALA SEQRES 8 B 269 SER LYS TYR GLU GLU MET TYR PRO PRO GLU ILE GLY ASP SEQRES 9 B 269 PHE ALA PHE VAL THR ASP ASN THR TYR THR LYS HIS GLN SEQRES 10 B 269 ILE ARG GLN MET GLU MET LYS ILE LEU ARG ALA LEU ASN SEQRES 11 B 269 PHE GLY LEU GLY ARG PRO LEU PRO LEU HIS PHE LEU ARG SEQRES 12 B 269 ARG ALA SER LYS ILE GLY GLU VAL ASP VAL GLU GLN HIS SEQRES 13 B 269 THR LEU ALA LYS TYR LEU MET GLU LEU THR MET LEU ASP SEQRES 14 B 269 TYR ASP MET VAL HIS PHE PRO PRO SER GLN ILE ALA ALA SEQRES 15 B 269 GLY ALA PHE SER LEU ALA LEU LYS ILE LEU ASP ASN GLY SEQRES 16 B 269 GLU TRP THR PRO THR LEU GLN HIS TYR LEU SER TYR THR SEQRES 17 B 269 GLU GLU SER LEU LEU PRO VAL MET GLN HIS LEU ALA LYS SEQRES 18 B 269 ASN VAL VAL MET VAL ASN GLN GLY LEU THR LYS HIS MET SEQRES 19 B 269 THR VAL LYS ASN LYS TYR ALA THR SER LYS HIS ALA LYS SEQRES 20 B 269 ILE SER THR LEU PRO GLN LEU ASN SER ALA LEU VAL GLN SEQRES 21 B 269 ASP LEU ALA LYS ALA VAL ALA LYS VAL FORMUL 3 HOH *94(H2 O) HELIX 1 1 TYR A 13 ALA A 20 1 8 HELIX 2 2 THR A 34 PHE A 52 1 19 HELIX 3 3 LEU A 55 GLN A 71 1 17 HELIX 4 4 PRO A 76 LYS A 78 5 3 HELIX 5 5 MET A 79 GLU A 96 1 18 HELIX 6 6 GLU A 101 THR A 109 1 9 HELIX 7 7 THR A 114 LEU A 129 1 16 HELIX 8 8 LEU A 137 ILE A 148 1 12 HELIX 9 9 ASP A 152 THR A 166 1 15 HELIX 10 10 MET A 167 VAL A 173 5 7 HELIX 11 11 SER A 178 ASP A 193 1 16 HELIX 12 12 THR A 200 LEU A 205 1 6 HELIX 13 13 PRO A 214 VAL A 226 1 13 HELIX 14 14 MET A 234 TYR A 240 1 7 HELIX 15 15 ALA A 241 ALA A 246 5 6 HELIX 16 16 LYS A 247 LEU A 251 5 5 HELIX 17 17 ASN A 255 VAL A 259 5 5 HELIX 18 18 ASP B 9 ALA B 22 1 14 HELIX 19 19 THR B 34 PHE B 52 1 19 HELIX 20 20 LEU B 55 GLN B 71 1 17 HELIX 21 21 PRO B 76 LYS B 78 5 3 HELIX 22 22 MET B 79 GLU B 96 1 18 HELIX 23 23 GLU B 101 THR B 109 1 9 HELIX 24 24 THR B 114 LEU B 129 1 16 HELIX 25 25 LEU B 137 ILE B 148 1 12 HELIX 26 26 ASP B 152 THR B 166 1 15 HELIX 27 27 MET B 167 VAL B 173 5 7 HELIX 28 28 SER B 178 ASN B 194 1 17 HELIX 29 29 THR B 198 LEU B 205 1 8 HELIX 30 30 THR B 208 ASN B 227 1 20 HELIX 31 31 MET B 234 TYR B 240 1 7 HELIX 32 32 ALA B 241 ALA B 246 5 6 HELIX 33 33 LYS B 247 LEU B 251 5 5 CRYST1 117.169 117.169 197.685 90.00 90.00 120.00 P 62 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008535 0.004927 0.000000 0.00000 SCALE2 0.000000 0.009855 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005059 0.00000