PDB Short entry for 2BAU HEADER SIGNALING PROTEIN 14-OCT-05 2BAU TITLE SOLUTION NMR STRUCTURE OF THE MICELLE-BOUND MYRISTOYLATED N-TERMINAL TITLE 2 ARF6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADP-RIBOSYLATION FACTOR 6; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL PEPTIDE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THIS SEQUENCE IS THE N-TERMINAL PEPTIDE OF A PROTEIN SOURCE 4 WHICH OCCURS NATURALLY IN HOMO SAPIENS (HUMAN). KEYWDS MICELLE-BOUND, MYRISTOYLATED PEPTIDE, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 12 AUTHOR D.GIZACHEW REVDAT 3 09-MAR-22 2BAU 1 REMARK LINK REVDAT 2 24-FEB-09 2BAU 1 VERSN REVDAT 1 25-JUL-06 2BAU 0 JRNL AUTH D.GIZACHEW,R.OSWALD JRNL TITL NMR STRUCTURAL STUDIES OF THE MYRISTOYLATED N-TERMINUS OF JRNL TITL 2 ADP RIBOSYLATION FACTOR 6 (ARF6). JRNL REF FEBS LETT. V. 580 4296 2006 JRNL REFN ISSN 0014-5793 JRNL PMID 16839550 JRNL DOI 10.1016/J.FEBSLET.2006.06.086 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH-2.9.9 REMARK 3 AUTHORS : LAKOWSKI REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2BAU COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-OCT-05. REMARK 100 THE DEPOSITION ID IS D_1000034888. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5 REMARK 210 IONIC STRENGTH : 7 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 5MM MYRISTOYLATED N-TERMINAL REMARK 210 ARF6; 5MM ACETATE BUFFER, 100MM REMARK 210 FULLY DEUTERATED REMARK 210 DODECYLPHOSPHOCHOLINE (DPC) REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D TOCSY; 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 12 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG22 VAL A 4 H LEU A 5 1.20 REMARK 500 N LEU A 5 H SER A 6 1.34 REMARK 500 O VAL A 4 H ILE A 8 1.42 REMARK 500 C VAL A 4 H SER A 6 1.43 REMARK 500 CA VAL A 4 H LYS A 7 1.53 REMARK 500 O VAL A 4 H GLY A 10 1.59 REMARK 500 O LYS A 3 N LYS A 7 1.98 REMARK 500 O VAL A 4 N LYS A 7 2.04 REMARK 500 C VAL A 4 N SER A 6 2.07 REMARK 500 O VAL A 4 N SER A 6 2.11 REMARK 500 O VAL A 4 N ILE A 8 2.15 REMARK 500 N GLY A 2 O1 MYR A 1 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 VAL A 4 CA VAL A 4 CB -0.141 REMARK 500 2 VAL A 4 CA VAL A 4 CB -0.139 REMARK 500 4 VAL A 4 CB VAL A 4 CG2 -0.132 REMARK 500 5 VAL A 4 CA VAL A 4 CB -0.140 REMARK 500 6 VAL A 4 CB VAL A 4 CG2 -0.137 REMARK 500 7 VAL A 4 CA VAL A 4 CB -0.130 REMARK 500 8 VAL A 4 CB VAL A 4 CG2 -0.137 REMARK 500 8 LEU A 5 CA LEU A 5 CB -0.151 REMARK 500 9 VAL A 4 CA VAL A 4 CB -0.135 REMARK 500 9 LEU A 5 CA LEU A 5 CB -0.140 REMARK 500 10 VAL A 4 CA VAL A 4 CB -0.142 REMARK 500 11 ILE A 8 N ILE A 8 CA -0.122 REMARK 500 12 ILE A 8 N ILE A 8 CA -0.124 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 LEU A 5 N - CA - CB ANGL. DEV. = -17.7 DEGREES REMARK 500 1 LEU A 5 CA - C - N ANGL. DEV. = -15.8 DEGREES REMARK 500 1 SER A 6 N - CA - CB ANGL. DEV. = -11.6 DEGREES REMARK 500 1 PHE A 9 N - CA - CB ANGL. DEV. = -14.2 DEGREES REMARK 500 2 VAL A 4 CA - CB - CG2 ANGL. DEV. = -9.3 DEGREES REMARK 500 2 LEU A 5 N - CA - CB ANGL. DEV. = -17.1 DEGREES REMARK 500 2 LEU A 5 CA - C - N ANGL. DEV. = -16.2 DEGREES REMARK 500 2 SER A 6 N - CA - CB ANGL. DEV. = -12.1 DEGREES REMARK 500 2 PHE A 9 N - CA - CB ANGL. DEV. = -13.9 DEGREES REMARK 500 3 LEU A 5 CB - CG - CD2 ANGL. DEV. = -10.8 DEGREES REMARK 500 4 VAL A 4 CA - CB - CG2 ANGL. DEV. = -9.8 DEGREES REMARK 500 4 LEU A 5 N - CA - CB ANGL. DEV. = -17.7 DEGREES REMARK 500 4 LEU A 5 CA - C - N ANGL. DEV. = -14.7 DEGREES REMARK 500 4 SER A 6 N - CA - CB ANGL. DEV. = -10.6 DEGREES REMARK 500 4 PHE A 9 N - CA - CB ANGL. DEV. = -15.2 DEGREES REMARK 500 5 VAL A 4 CA - CB - CG2 ANGL. DEV. = -9.2 DEGREES REMARK 500 5 LEU A 5 N - CA - CB ANGL. DEV. = -17.5 DEGREES REMARK 500 5 LEU A 5 CA - C - N ANGL. DEV. = -15.5 DEGREES REMARK 500 5 SER A 6 N - CA - CB ANGL. DEV. = -12.3 DEGREES REMARK 500 5 PHE A 9 N - CA - CB ANGL. DEV. = -13.7 DEGREES REMARK 500 6 VAL A 4 CA - CB - CG2 ANGL. DEV. = -9.5 DEGREES REMARK 500 6 VAL A 4 CA - C - N ANGL. DEV. = -13.2 DEGREES REMARK 500 6 LEU A 5 N - CA - CB ANGL. DEV. = -15.4 DEGREES REMARK 500 6 LEU A 5 CA - C - N ANGL. DEV. = -15.1 DEGREES REMARK 500 6 SER A 6 N - CA - CB ANGL. DEV. = -9.7 DEGREES REMARK 500 6 PHE A 9 N - CA - CB ANGL. DEV. = -12.6 DEGREES REMARK 500 7 LEU A 5 N - CA - CB ANGL. DEV. = -17.1 DEGREES REMARK 500 7 LEU A 5 CA - C - N ANGL. DEV. = -14.2 DEGREES REMARK 500 7 SER A 6 N - CA - CB ANGL. DEV. = -10.5 DEGREES REMARK 500 7 PHE A 9 N - CA - CB ANGL. DEV. = -14.4 DEGREES REMARK 500 8 VAL A 4 CA - CB - CG2 ANGL. DEV. = -10.8 DEGREES REMARK 500 8 LEU A 5 N - CA - CB ANGL. DEV. = -15.7 DEGREES REMARK 500 8 LEU A 5 CA - C - N ANGL. DEV. = -16.1 DEGREES REMARK 500 8 SER A 6 N - CA - CB ANGL. DEV. = -10.4 DEGREES REMARK 500 8 PHE A 9 N - CA - CB ANGL. DEV. = -15.6 DEGREES REMARK 500 9 LEU A 5 N - CA - CB ANGL. DEV. = -17.5 DEGREES REMARK 500 9 LEU A 5 CA - C - N ANGL. DEV. = -14.8 DEGREES REMARK 500 9 SER A 6 N - CA - CB ANGL. DEV. = -10.5 DEGREES REMARK 500 9 PHE A 9 N - CA - CB ANGL. DEV. = -14.4 DEGREES REMARK 500 10 VAL A 4 CA - CB - CG2 ANGL. DEV. = -9.1 DEGREES REMARK 500 10 LEU A 5 N - CA - CB ANGL. DEV. = -17.4 DEGREES REMARK 500 10 LEU A 5 CA - C - N ANGL. DEV. = -15.9 DEGREES REMARK 500 10 SER A 6 N - CA - CB ANGL. DEV. = -13.5 DEGREES REMARK 500 10 PHE A 9 N - CA - CB ANGL. DEV. = -14.1 DEGREES REMARK 500 11 VAL A 4 N - CA - CB ANGL. DEV. = -15.5 DEGREES REMARK 500 11 LEU A 5 N - CA - CB ANGL. DEV. = -15.9 DEGREES REMARK 500 11 SER A 6 N - CA - CB ANGL. DEV. = -11.7 DEGREES REMARK 500 12 VAL A 4 N - CA - CB ANGL. DEV. = -14.8 DEGREES REMARK 500 12 VAL A 4 CA - CB - CG2 ANGL. DEV. = -10.3 DEGREES REMARK 500 12 LEU A 5 N - CA - CB ANGL. DEV. = -14.9 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 51 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 5 -15.58 -43.39 REMARK 500 1 ILE A 8 -61.07 -104.00 REMARK 500 2 LEU A 5 -14.42 -43.74 REMARK 500 3 LEU A 5 -12.87 -44.74 REMARK 500 5 LEU A 5 -14.49 -43.78 REMARK 500 5 ILE A 8 -60.70 -103.71 REMARK 500 7 LEU A 5 -18.87 -41.55 REMARK 500 7 ILE A 8 -61.11 -105.33 REMARK 500 9 LEU A 5 -18.68 -41.06 REMARK 500 9 ILE A 8 -61.34 -103.09 REMARK 500 10 LEU A 5 -13.49 -43.99 REMARK 500 10 ILE A 8 -60.96 -100.45 REMARK 500 11 ILE A 8 -71.70 -73.40 REMARK 500 12 ILE A 8 -72.04 -73.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MYR A 1 DBREF 2BAU A 2 11 UNP P62330 ARF6_HUMAN 1 10 SEQRES 1 A 10 GLY LYS VAL LEU SER LYS ILE PHE GLY ASN HET MYR A 1 42 HETNAM MYR MYRISTIC ACID FORMUL 2 MYR C14 H28 O2 LINK C1 MYR A 1 N GLY A 2 1555 1555 1.31 SITE 1 AC1 4 GLY A 2 VAL A 4 LEU A 5 PHE A 9 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000