PDB Short entry for 2BOT HEADER CONTRACTILE PROTEIN 13-APR-05 2BOT TITLE HOMOLOGY-BASED MODEL OF THE DYNEIN COILED-COIL STALK IN THE TITLE 2 22:19 CONFIGURATION. COMPND MOL_ID: 1; COMPND 2 MOLECULE: DYNEIN HEAVY CHAIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: STALK, RESIDUES 3197-3296; COMPND 5 SYNONYM: DYHC, CYTOPLASMIC DYNEIN HEAVY CHAIN 1, DYHC1; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DYNEIN HEAVY CHAIN; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: STALK, RESIDUES 3398-3497; COMPND 10 SYNONYM: DYHC, CYTOPLASMIC DYNEIN HEAVY CHAIN 1, DYHC1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 6 ORGANISM_COMMON: HUMAN KEYWDS DYNEIN STALK, 14 HEPTAD ANTIPARALLEL COILED-COIL, 22:19 KEYWDS 2 CONFIGURATION, CONTRACTILE PROTEIN EXPDTA THEORETICAL MODEL AUTHOR I.R.GIBBONS,J.E.GARBARINO,C.E.TAN,S.L.RECK-PETERSON, AUTHOR 2 R.D.VALE,A.P.CARTER REVDAT 2 22-JUN-05 2BOT 1 JRNL REVDAT 1 18-APR-05 2BOT 0 JRNL AUTH I.R.GIBBONS,J.E.GARBARINO,C.E.TAN, JRNL AUTH 2 S.L.RECK-PETERSON,R.D.VALE,A.P.CARTER JRNL TITL THE AFFINITY OF THE DYNEIN MICROTUBULE-BINDING JRNL TITL 2 DOMAIN IS MODULATED BY THE CONFORMATION OF ITS JRNL TITL 3 COILED-COIL STALK JRNL REF J.BIOL.CHEM. V. 280 23960 2005 JRNL REFN ASTM JBCHA3 FR ISSN 0021-9258 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ENERGY MINIMIZATION AND MANUAL REMARK 3 ADJUSTMENT REMARK 4 REMARK 4 2BOT COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY EBI ON 14-APR-2005. REMARK 100 THE EBI ID CODE IS EBI-23620. REMARK 220 REMARK 220 EXPERIMENTAL DETAILS REMARK 220 EXPERIMENT TYPE : THEORETICAL MODELLING REMARK 220 REMARK 220 REMARK: THE ATOMIC-LEVEL MODEL OF THE DYNEIN COILED-COIL STALK REMARK 220 WAS CONSTRUCTED BY INITIALLY CONSTRUCTING A 15- HEPTAD REMARK 220 COILED COIL REGION USING THE 2.5-HEPTAD OF THE HEPATITIS REMARK 220 DELTA ANTIGENOLIGOMERIZATION DOMAIN AS A TEMPLATE (PDB: REMARK 220 1A92). AMINO-ACID SEQUENCES OF CC1 AND CC2 FROM MOUSE REMARK 220 CYTOPLASMIC DYNEIN WERE THREADED ONTO THE 15- HEPTAD REMARK 220 TEMPLATE REMARK 225 REMARK 225 THEORETICAL MODEL REMARK 225 THE COORDINATES IN THIS ENTRY REPRESENT A MODEL STRUCTURE. REMARK 225 PROTEIN DATA BANK CONVENTIONS REQUIRE THAT CRYST1 AND REMARK 225 SCALE RECORDS BE INCLUDED, BUT THE VALUES ON THESE REMARK 225 RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI REMARK 500 CE2 TYR B 54 CD1 ILE B 58 1.86 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1991 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR B 50 CB - CG - CD1 ANGL. DEV. =-15.2 DEGREES REMARK 500 SER B 78 CA - C - O ANGL. DEV. =-15.8 DEGREES REMARK 500 THR B 95 CA - CB - CG2 ANGL. DEV. = 17.8 DEGREES REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2BOR RELATED DB: PDB REMARK 900 HOMOLOGY-BASED MODEL OF THE DYNEIN COILED- REMARK 900 COIL STALK IN THE 19:19 CONFIGURATION. DBREF 2BOT A 20 119 UNP Q14204 DYHC_HUMAN 3197 3296 DBREF 2BOT B 1 100 UNP Q14204 DYHC_HUMAN 3398 3497 SEQRES 1 A 100 GLN GLN MET HIS LEU ASN VAL GLY LEU ARG LYS ILE LYS SEQRES 2 A 100 GLU THR VAL ASP GLN VAL GLU GLU LEU ARG ARG ASP LEU SEQRES 3 A 100 ARG ILE LYS SER GLN GLU LEU GLU VAL LYS ASN ALA ALA SEQRES 4 A 100 ALA ASN ASP LYS LEU LYS LYS MET VAL LYS ASP GLN GLN SEQRES 5 A 100 GLU ALA GLU LYS LYS LYS VAL MET SER GLN GLU ILE GLN SEQRES 6 A 100 GLU GLN LEU HIS LYS GLN GLN GLU VAL ILE ALA ASP LYS SEQRES 7 A 100 GLN MET SER VAL LYS GLU ASP LEU ASP LYS VAL GLU PRO SEQRES 8 A 100 ALA VAL ILE GLU ALA GLN ASN ALA VAL SEQRES 1 B 100 ALA GLN LEU ASN TYR ALA ASP MET LEU LYS ARG VAL GLU SEQRES 2 B 100 PRO LEU ARG ASN GLU LEU GLN LYS LEU GLU ASP ASP ALA SEQRES 3 B 100 LYS ASP ASN GLN GLN LYS ALA ASN GLU VAL GLU GLN MET SEQRES 4 B 100 ILE ARG ASP LEU GLU ALA SER ILE ALA ARG TYR LYS GLU SEQRES 5 B 100 GLU TYR ALA VAL LEU ILE SER GLU ALA GLN ALA ILE LYS SEQRES 6 B 100 ALA ASP LEU ALA ALA VAL GLU ALA LYS VAL ASN ARG SER SEQRES 7 B 100 THR ALA LEU LEU LYS SER LEU SER ALA GLU ARG GLU ARG SEQRES 8 B 100 TRP GLU LYS THR SER GLU THR PHE LYS HELIX 1 1 GLN A 20 VAL A 119 1 100 HELIX 2 2 ALA B 1 LYS B 100 1 100 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000