PDB Short entry for 2BPC HEADER NUCLEOTIDYLTRANSFERASE 08-JUL-94 2BPC TITLE CRYSTAL STRUCTURE OF RAT DNA POLYMERASE BETA: EVIDENCE FOR A COMMON TITLE 2 POLYMERASE MECHANISM COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE BETA; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.7.7; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: BACTERIAL KEYWDS NUCLEOTIDYLTRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.R.SAWAYA,H.PELLETIER,A.KUMAR,S.H.WILSON,J.KRAUT REVDAT 3 14-FEB-24 2BPC 1 REMARK REVDAT 2 24-FEB-09 2BPC 1 VERSN REVDAT 1 31-AUG-94 2BPC 0 JRNL AUTH M.R.SAWAYA,H.PELLETIER,A.KUMAR,S.H.WILSON,J.KRAUT JRNL TITL CRYSTAL STRUCTURE OF RAT DNA POLYMERASE BETA: EVIDENCE FOR A JRNL TITL 2 COMMON POLYMERASE MECHANISM. JRNL REF SCIENCE V. 264 1930 1994 JRNL REFN ISSN 0036-8075 JRNL PMID 7516581 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.PELLETIER,M.R.SAWAYA,S.H.WILSON,J.KRAUT REMARK 1 TITL STRUCTURES OF TERNARY COMPLEXES OF RAT DNA POLYMERASE BETA, REMARK 1 TITL 2 A DNA TEMPLATE-PRIMER, AND DDCTP REMARK 1 REF SCIENCE V. 264 1891 1994 REMARK 1 REFN ISSN 0036-8075 REMARK 1 REFERENCE 2 REMARK 1 AUTH A.KUMAR,S.G.WIDEN,K.R.WILLIAMS,P.KEDAR,R.L.KARPEL,S.H.WILSON REMARK 1 TITL STUDIES OF THE DOMAIN STRUCTURE OF MAMMALIAN DNA POLYMERASE REMARK 1 TITL 2 BETA. IDENTIFICATION OF A DISCRETE TEMPLATE BINDING DOMAIN REMARK 1 REF J.BIOL.CHEM. V. 265 2124 1990 REMARK 1 REFN ISSN 0021-9258 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 6929 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1923 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 92 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.020 ; NULL ; NULL REMARK 3 BOND ANGLES (DEGREES) : 3.000 ; NULL ; NULL REMARK 3 TORSION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES (A) : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : NULL REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2BPC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000177849. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 59.90350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.31650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 59.90350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.31650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 DNA POLYMERASE BETA POSSESSES A PROTEOLYTICALLY SENSITIVE REMARK 400 REGION IN ITS AMINO ACID SEQUENCE (RESIDUES 80 - 90), AND REMARK 400 THE PRECISE CLEAVAGE SITE VARIES DEPENDING ON THE PROTEASE REMARK 400 OR THE CHEMICAL REAGENT USED IN THE CLEAVAGE REACTION (SEE REMARK 400 A. KUMAR ET AL., J. BIOL. CHEM. 265, 2124 (1990)). THE REMARK 400 AUTHORS SUSPECT THAT A BACTERIAL PROTEASE OF UNKNOWN ORIGIN REMARK 400 UNEXPECTEDLY CLEAVED THEIR INTACT ENZYME DURING THE REMARK 400 CRYSTALLIZATION PROCESS, RESULTING IN CRYSTALS OF THE REMARK 400 PROTEIN STRUCTURE REPORTED IN THIS ENTRY - THE 31-KD REMARK 400 COOH-TERMINAL DOMAIN (RESIDUES 88 - 335) OF DNA POLYMERASE REMARK 400 BETA. BECAUSE THE AUTHORS HAVE NOT DONE AN N-TERMINAL REMARK 400 ANALYSIS ON THE PROTEIN IN THEIR CRYSTALS, THEIR CHOICE OF REMARK 400 THE CLEAVAGE SITE (BETWEEN RESIDUES 87 AND 88) IS RATHER REMARK 400 ARBITRARY, AND IN FACT, THERE MAY EVEN BE VARIABLE REMARK 400 N-TERMINAL RESIDUES WITHIN ANY GIVEN CRYSTAL OF THIS REMARK 400 CLEAVED PROTEIN. REMARK 400 REMARK 400 PLEASE NOTE THAT THE STRUCTURE PRESENTED IN THIS ENTRY IS REMARK 400 ONLY THE 31 KD DOMAIN AND THE FIRST 8 KD DOMAIN IS NOT REMARK 400 PRESENT IN THIS STRUCTURE. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 88 REMARK 465 ARG A 89 REMARK 465 GLN A 90 REMARK 465 ASP A 246 REMARK 465 GLU A 247 REMARK 465 ASN A 248 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 91 CG OD1 OD2 REMARK 470 ASP A 92 CG OD1 OD2 REMARK 470 SER A 109 OG REMARK 470 ILE A 119 CG1 CG2 CD1 REMARK 470 GLU A 123 CG CD OE1 OE2 REMARK 470 LYS A 131 CG CD CE NZ REMARK 470 LYS A 220 CG CD CE NZ REMARK 470 SER A 243 OG REMARK 470 GLU A 244 CG CD OE1 OE2 REMARK 470 ASN A 245 CG OD1 ND2 REMARK 470 LYS A 280 CG CD CE NZ REMARK 470 VAL A 303 CG1 CG2 REMARK 470 THR A 304 OG1 CG2 REMARK 470 VAL A 306 CG1 CG2 REMARK 470 ARG A 326 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 117 CD GLU A 117 OE2 0.083 REMARK 500 GLU A 129 CD GLU A 129 OE2 0.086 REMARK 500 GLU A 144 CD GLU A 144 OE2 0.097 REMARK 500 GLU A 147 CD GLU A 147 OE2 0.082 REMARK 500 GLU A 153 CD GLU A 153 OE2 0.088 REMARK 500 GLU A 154 CD GLU A 154 OE2 0.093 REMARK 500 GLU A 165 CD GLU A 165 OE2 0.081 REMARK 500 GLU A 172 CD GLU A 172 OE2 0.084 REMARK 500 GLU A 186 CD GLU A 186 OE2 0.078 REMARK 500 GLU A 203 CD GLU A 203 OE2 0.083 REMARK 500 GLU A 216 CD GLU A 216 OE2 0.089 REMARK 500 GLU A 232 CD GLU A 232 OE2 0.086 REMARK 500 GLU A 249 CD GLU A 249 OE2 0.078 REMARK 500 GLU A 288 CD GLU A 288 OE2 0.081 REMARK 500 GLU A 295 CD GLU A 295 OE2 0.087 REMARK 500 GLU A 316 CD GLU A 316 OE2 0.067 REMARK 500 GLU A 329 CD GLU A 329 OE2 0.081 REMARK 500 GLU A 335 CD GLU A 335 OE2 0.095 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 182 NE - CZ - NH1 ANGL. DEV. = 4.9 DEGREES REMARK 500 ASP A 190 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP A 190 CB - CG - OD2 ANGL. DEV. = -8.1 DEGREES REMARK 500 ASP A 192 N - CA - CB ANGL. DEV. = 17.3 DEGREES REMARK 500 PRO A 208 C - N - CD ANGL. DEV. = -14.2 DEGREES REMARK 500 ASP A 226 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP A 226 CB - CG - OD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ARG A 253 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 258 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 258 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 TYR A 265 CB - CG - CD2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 299 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 PRO A 310 C - N - CA ANGL. DEV. = 14.1 DEGREES REMARK 500 PRO A 310 C - N - CD ANGL. DEV. = -17.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 92 44.20 -50.98 REMARK 500 THR A 93 -34.99 -138.84 REMARK 500 ARG A 126 -38.23 -38.25 REMARK 500 ASN A 128 40.74 -144.76 REMARK 500 PHE A 143 -65.59 -29.76 REMARK 500 ASP A 170 110.69 -175.54 REMARK 500 CYS A 178 -144.06 -91.16 REMARK 500 ARG A 183 22.02 -73.12 REMARK 500 ALA A 185 136.20 -35.74 REMARK 500 ASP A 192 104.54 -163.17 REMARK 500 SER A 202 18.55 -67.33 REMARK 500 SER A 205 -12.00 62.91 REMARK 500 LYS A 206 58.59 -108.60 REMARK 500 ARG A 222 42.74 77.56 REMARK 500 PHE A 223 -77.75 -97.66 REMARK 500 LEU A 228 -68.13 -96.67 REMARK 500 GLN A 240 134.09 -175.83 REMARK 500 LEU A 301 -138.50 -81.82 REMARK 500 VAL A 306 84.34 -39.05 REMARK 500 GLU A 309 94.52 -179.61 REMARK 500 PRO A 310 108.29 -35.11 REMARK 500 GLN A 324 79.63 36.75 REMARK 500 ARG A 333 64.63 -108.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 THE POSITION OF MN2+ IN THIS STRUCTURE, ALTHOUGH WEAKLY REMARK 600 OCCUPIED, CORRESPONDS TO THE MG2+ SITE B IN THE TERNARY REMARK 600 TEMPLATE-PRIMER-DDCTP COMPLEX, 2BPF. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 500 REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE ADVISORY NOTICE: REMARK 999 DIFFERENCE BETWEEN SWISS-PROT AND PDB SEQUENCE. REMARK 999 REMARK 999 SWISS-PROT ENTRY NAME: DPOB_RAT REMARK 999 REMARK 999 SWISS-PROT RESIDUE PDB SEQRES REMARK 999 NAME NUMBER NAME CHAIN SEQ/INSERT CODE REMARK 999 ARG 227 LEU 228 REMARK 999 REMARK 999 THE PAPER BY KUMAR, ET AL., J.BIOL.CHEM., 265, 2124, REMARK 999 (1990) REPORTS A CORRECTION TO THE SEQUENCE GIVEN IN REMARK 999 SWISS-PROT (SEE REFERENCE 3 ABOVE). DBREF 2BPC A 88 335 UNP P06766 DPOB_RAT 87 334 SEQRES 1 A 248 ILE ARG GLN ASP ASP THR SER SER SER ILE ASN PHE LEU SEQRES 2 A 248 THR ARG VAL THR GLY ILE GLY PRO SER ALA ALA ARG LYS SEQRES 3 A 248 LEU VAL ASP GLU GLY ILE LYS THR LEU GLU ASP LEU ARG SEQRES 4 A 248 LYS ASN GLU ASP LYS LEU ASN HIS HIS GLN ARG ILE GLY SEQRES 5 A 248 LEU LYS TYR PHE GLU ASP PHE GLU LYS ARG ILE PRO ARG SEQRES 6 A 248 GLU GLU MET LEU GLN MET GLN ASP ILE VAL LEU ASN GLU SEQRES 7 A 248 VAL LYS LYS LEU ASP PRO GLU TYR ILE ALA THR VAL CYS SEQRES 8 A 248 GLY SER PHE ARG ARG GLY ALA GLU SER SER GLY ASP MET SEQRES 9 A 248 ASP VAL LEU LEU THR HIS PRO ASN PHE THR SER GLU SER SEQRES 10 A 248 SER LYS GLN PRO LYS LEU LEU HIS ARG VAL VAL GLU GLN SEQRES 11 A 248 LEU GLN LYS VAL ARG PHE ILE THR ASP THR LEU SER LYS SEQRES 12 A 248 GLY GLU THR LYS PHE MET GLY VAL CYS GLN LEU PRO SER SEQRES 13 A 248 GLU ASN ASP GLU ASN GLU TYR PRO HIS ARG ARG ILE ASP SEQRES 14 A 248 ILE ARG LEU ILE PRO LYS ASP GLN TYR TYR CYS GLY VAL SEQRES 15 A 248 LEU TYR PHE THR GLY SER ASP ILE PHE ASN LYS ASN MET SEQRES 16 A 248 ARG ALA HIS ALA LEU GLU LYS GLY PHE THR ILE ASN GLU SEQRES 17 A 248 TYR THR ILE ARG PRO LEU GLY VAL THR GLY VAL ALA GLY SEQRES 18 A 248 GLU PRO LEU PRO VAL ASP SER GLU GLN ASP ILE PHE ASP SEQRES 19 A 248 TYR ILE GLN TRP ARG TYR ARG GLU PRO LYS ASP ARG SER SEQRES 20 A 248 GLU HET MN A 500 1 HETNAM MN MANGANESE (II) ION FORMUL 2 MN MN 2+ FORMUL 3 HOH *92(H2 O) HELIX 1 1 THR A 93 ARG A 102 1 10 HELIX 2 2 GLY A 107 ASP A 116 1 10 HELIX 3 3 LEU A 122 LYS A 127 1 6 HELIX 4 4 ASN A 128 LEU A 132 5 5 HELIX 5 5 ASN A 133 TYR A 142 1 10 HELIX 6 6 TYR A 142 LYS A 148 1 7 HELIX 7 7 ARG A 152 ASP A 170 1 19 HELIX 8 8 GLN A 207 ARG A 222 1 16 HELIX 9 9 GLN A 264 PHE A 272 1 9 HELIX 10 10 SER A 275 GLY A 290 1 16 HELIX 11 11 GLU A 316 ILE A 323 1 8 HELIX 12 12 GLU A 329 ARG A 333 5 5 SHEET 1 A 2 ILE A 150 PRO A 151 0 SHEET 2 A 2 SER A 187 SER A 188 -1 O SER A 188 N ILE A 150 SHEET 1 B 5 ILE A 174 VAL A 177 0 SHEET 2 B 5 MET A 191 THR A 196 -1 O LEU A 194 N THR A 176 SHEET 3 B 5 ARG A 253 LEU A 259 1 O ARG A 254 N MET A 191 SHEET 4 B 5 LYS A 234 CYS A 239 -1 N PHE A 235 O ILE A 257 SHEET 5 B 5 ILE A 224 LYS A 230 -1 N THR A 225 O VAL A 238 SHEET 1 C 2 PHE A 291 ILE A 293 0 SHEET 2 C 2 ILE A 298 PRO A 300 -1 N ARG A 299 O THR A 292 CISPEP 1 GLY A 274 SER A 275 0 -0.08 SITE 1 AC1 1 ASP A 190 CRYST1 119.807 62.633 37.085 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008347 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015966 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026965 0.00000