PDB Short entry for 2BQ8 HEADER HYDROLASE 27-APR-05 2BQ8 TITLE CRYSTAL STRUCTURE OF HUMAN PURPLE ACID PHOSPHATASE WITH AN INHIBITORY TITLE 2 CONFORMATION OF THE REPRESSION LOOP COMPND MOL_ID: 1; COMPND 2 MOLECULE: TARTRATE-RESISTANT ACID PHOSPHATASE TYPE 5; COMPND 3 CHAIN: X; COMPND 4 SYNONYM: PURPLE ACID PHOSPHATASE, TR-AP, TRATPASE, TARTRATE-RESISTANT COMPND 5 ACID ATPASE; COMPND 6 EC: 3.1.3.2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS METALLOPHOSPHATASE, DINUCLEAR METAL SITE, TRAP, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR N.STRAETER,B.JASPER,B.KREBS REVDAT 4 13-DEC-23 2BQ8 1 LINK REVDAT 3 24-JUL-19 2BQ8 1 REMARK REVDAT 2 24-FEB-09 2BQ8 1 VERSN REVDAT 1 24-OCT-05 2BQ8 0 JRNL AUTH N.STRATER,B.JASPER,M.SCHOLTE,B.KREBS,A.P.DUFF,D.B.LANGLEY, JRNL AUTH 2 R.HAN,B.A.AVERILL,H.C.FREEMAN,J.M.GUSS JRNL TITL CRYSTAL STRUCTURES OF RECOMBINANT HUMAN PURPLE ACID JRNL TITL 2 PHOSPHATASE WITH AND WITHOUT AN INHIBITORY CONFORMATION OF JRNL TITL 3 THE REPRESSION LOOP. JRNL REF J.MOL.BIOL. V. 351 233 2005 JRNL REFN ISSN 0022-2836 JRNL PMID 15993892 JRNL DOI 10.1016/J.JMB.2005.04.014 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0003 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 18826 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1014 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1360 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1480 REMARK 3 BIN FREE R VALUE SET COUNT : 77 REMARK 3 BIN FREE R VALUE : 0.1990 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2429 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 147 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.19000 REMARK 3 B22 (A**2) : -1.19000 REMARK 3 B33 (A**2) : 1.78000 REMARK 3 B12 (A**2) : -0.59000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.224 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.176 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.099 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.698 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2501 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3396 ; 1.383 ; 1.926 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 303 ; 6.745 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 122 ;36.432 ;22.869 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 398 ;13.902 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;19.776 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 360 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1943 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1115 ; 0.202 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1685 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 171 ; 0.205 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 43 ; 0.209 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.211 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1558 ; 0.859 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2436 ; 1.393 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1090 ; 2.161 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 960 ; 3.374 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 1 X 304 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0000 0.0000 0.0000 REMARK 3 T TENSOR REMARK 3 T11: 0.0000 T22: 0.0000 REMARK 3 T33: 0.0000 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: 0.0000 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2BQ8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-APR-05. REMARK 100 THE DEPOSITION ID IS D_1290023804. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8122 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 1988 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 19.40 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 28.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.41000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 6.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1UTE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M HEPES PH6.0, 2 M AMMONIUM REMARK 280 SULFATE, 10% PEG400, 0.05M ZINC SULFATE, PH 6.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.00233 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 96.00467 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 72.00350 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 120.00583 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 24.00117 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 48.00233 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 96.00467 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 120.00583 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 72.00350 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 24.00117 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH X2014 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH X 2089 O HOH X 2092 1.95 REMARK 500 NE2 HIS X 249 O HOH X 2123 2.08 REMARK 500 O HOH X 2013 O HOH X 2042 2.12 REMARK 500 O HOH X 2047 O HOH X 2106 2.16 REMARK 500 O HOH X 2087 O HOH X 2089 2.16 REMARK 500 OE1 GLU X 265 O HOH X 2131 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP X 62 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP X 135 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP X 177 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP X 220 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP X 50 60.26 60.13 REMARK 500 ASP X 59 -179.69 -175.12 REMARK 500 PHE X 69 -68.54 -104.97 REMARK 500 PHE X 73 59.23 -93.78 REMARK 500 SER X 148 62.16 -103.12 REMARK 500 GLU X 152 -73.74 -57.88 REMARK 500 ALA X 191 -148.00 -98.99 REMARK 500 HIS X 219 -48.68 73.32 REMARK 500 ASN X 241 -39.06 -150.94 REMARK 500 PHE X 294 141.28 -170.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 X1305 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP X 12 OD1 REMARK 620 2 ASP X 50 OD2 94.0 REMARK 620 3 TYR X 53 OH 97.5 100.8 REMARK 620 4 ASP X 145 OD2 158.6 77.3 103.3 REMARK 620 5 HIS X 221 NE2 94.8 166.2 88.6 90.8 REMARK 620 6 HOH X2080 O 80.8 78.8 178.2 78.4 92.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN X1307 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS X 22 NE2 REMARK 620 2 GLU X 67 OE2 126.5 REMARK 620 3 ASP X 71 OD2 100.4 102.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 X1306 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP X 50 OD2 REMARK 620 2 ASP X 145 OD1 89.3 REMARK 620 3 HIS X 184 NE2 87.8 176.8 REMARK 620 4 HIS X 219 ND1 166.9 94.9 87.7 REMARK 620 5 HOH X2080 O 78.1 77.1 100.9 90.7 REMARK 620 6 HOH X2110 O 104.4 89.8 92.2 88.1 166.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 X1305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 X1306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN X1307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 X1308 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2BQ8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN PURPLE ACID PHOSPHATASE WITH AN REMARK 900 INHIBITORY CONFORMATION OF THE REPRESSION LOOP DBREF 2BQ8 X 1 304 UNP P13686 PPA5_HUMAN 22 325 SEQRES 1 X 304 ALA THR PRO ALA LEU ARG PHE VAL ALA VAL GLY ASP TRP SEQRES 2 X 304 GLY GLY VAL PRO ASN ALA PRO PHE HIS THR ALA ARG GLU SEQRES 3 X 304 MET ALA ASN ALA LYS GLU ILE ALA ARG THR VAL GLN ILE SEQRES 4 X 304 LEU GLY ALA ASP PHE ILE LEU SER LEU GLY ASP ASN PHE SEQRES 5 X 304 TYR PHE THR GLY VAL GLN ASP ILE ASN ASP LYS ARG PHE SEQRES 6 X 304 GLN GLU THR PHE GLU ASP VAL PHE SER ASP ARG SER LEU SEQRES 7 X 304 ARG LYS VAL PRO TRP TYR VAL LEU ALA GLY ASN HIS ASP SEQRES 8 X 304 HIS LEU GLY ASN VAL SER ALA GLN ILE ALA TYR SER LYS SEQRES 9 X 304 ILE SER LYS ARG TRP ASN PHE PRO SER PRO PHE TYR ARG SEQRES 10 X 304 LEU HIS PHE LYS ILE PRO GLN THR ASN VAL SER VAL ALA SEQRES 11 X 304 ILE PHE MET LEU ASP THR VAL THR LEU CYS GLY ASN SER SEQRES 12 X 304 ASP ASP PHE LEU SER GLN GLN PRO GLU ARG PRO ARG ASP SEQRES 13 X 304 VAL LYS LEU ALA ARG THR GLN LEU SER TRP LEU LYS LYS SEQRES 14 X 304 GLN LEU ALA ALA ALA ARG GLU ASP TYR VAL LEU VAL ALA SEQRES 15 X 304 GLY HIS TYR PRO VAL TRP SER ILE ALA GLU HIS GLY PRO SEQRES 16 X 304 THR HIS CYS LEU VAL LYS GLN LEU ARG PRO LEU LEU ALA SEQRES 17 X 304 THR TYR GLY VAL THR ALA TYR LEU CYS GLY HIS ASP HIS SEQRES 18 X 304 ASN LEU GLN TYR LEU GLN ASP GLU ASN GLY VAL GLY TYR SEQRES 19 X 304 VAL LEU SER GLY ALA GLY ASN PHE MET ASP PRO SER LYS SEQRES 20 X 304 ARG HIS GLN ARG LYS VAL PRO ASN GLY TYR LEU ARG PHE SEQRES 21 X 304 HIS TYR GLY THR GLU ASP SER LEU GLY GLY PHE ALA TYR SEQRES 22 X 304 VAL GLU ILE SER SER LYS GLU MET THR VAL THR TYR ILE SEQRES 23 X 304 GLU ALA SER GLY LYS SER LEU PHE LYS THR ARG LEU PRO SEQRES 24 X 304 ARG ARG ALA ARG PRO HET FE2 X1305 1 HET FE2 X1306 1 HET ZN X1307 1 HET SO4 X1308 5 HETNAM FE2 FE (II) ION HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION FORMUL 2 FE2 2(FE 2+) FORMUL 4 ZN ZN 2+ FORMUL 5 SO4 O4 S 2- FORMUL 6 HOH *147(H2 O) HELIX 1 1 THR X 23 GLY X 41 1 19 HELIX 2 2 LYS X 63 PHE X 69 1 7 HELIX 3 3 ASP X 75 LYS X 80 1 6 HELIX 4 4 GLY X 88 LEU X 93 1 6 HELIX 5 5 ASN X 95 TYR X 102 1 8 HELIX 6 6 SER X 103 ILE X 105 5 3 HELIX 7 7 ASP X 135 GLY X 141 1 7 HELIX 8 8 ASP X 156 ALA X 174 1 19 HELIX 9 9 THR X 196 LEU X 203 1 8 HELIX 10 10 LEU X 203 TYR X 210 1 8 HELIX 11 11 HIS X 249 VAL X 253 5 5 SHEET 1 XA 7 TRP X 109 ASN X 110 0 SHEET 2 XA 7 TRP X 83 VAL X 85 1 O TRP X 83 N ASN X 110 SHEET 3 XA 7 PHE X 44 SER X 47 1 O ILE X 45 N TYR X 84 SHEET 4 XA 7 LEU X 5 VAL X 10 1 O VAL X 8 N LEU X 46 SHEET 5 XA 7 GLY X 270 ILE X 276 -1 O ALA X 272 N ALA X 9 SHEET 6 XA 7 GLU X 280 GLU X 287 -1 O THR X 282 N GLU X 275 SHEET 7 XA 7 SER X 292 PRO X 299 -1 N LEU X 293 O TYR X 285 SHEET 1 XB 7 TYR X 116 LYS X 121 0 SHEET 2 XB 7 SER X 128 MET X 133 -1 O VAL X 129 N PHE X 120 SHEET 3 XB 7 TYR X 178 ALA X 182 1 O TYR X 178 N ALA X 130 SHEET 4 XB 7 ALA X 214 CYS X 217 1 O ALA X 214 N VAL X 181 SHEET 5 XB 7 GLY X 233 SER X 237 1 O GLY X 233 N TYR X 215 SHEET 6 XB 7 LEU X 223 GLN X 227 -1 O GLN X 224 N LEU X 236 SHEET 7 XB 7 LEU X 258 TYR X 262 -1 N ARG X 259 O TYR X 225 SSBOND 1 CYS X 140 CYS X 198 1555 1555 2.06 LINK OD1 ASP X 12 FE FE2 X1305 1555 1555 2.12 LINK NE2 HIS X 22 ZN ZN X1307 10665 1555 2.04 LINK OD2 ASP X 50 FE FE2 X1305 1555 1555 2.26 LINK OD2 ASP X 50 FE FE2 X1306 1555 1555 2.26 LINK OH TYR X 53 FE FE2 X1305 1555 1555 1.83 LINK OE2 GLU X 67 ZN ZN X1307 1555 1555 2.02 LINK OD2 ASP X 71 ZN ZN X1307 1555 1555 1.82 LINK OD2 ASP X 145 FE FE2 X1305 1555 1555 2.03 LINK OD1 ASP X 145 FE FE2 X1306 1555 1555 2.10 LINK NE2 HIS X 184 FE FE2 X1306 1555 1555 2.14 LINK ND1 HIS X 219 FE FE2 X1306 1555 1555 2.15 LINK NE2 HIS X 221 FE FE2 X1305 1555 1555 2.21 LINK FE FE2 X1305 O HOH X2080 1555 1555 1.99 LINK FE FE2 X1306 O HOH X2080 1555 1555 2.03 LINK FE FE2 X1306 O HOH X2110 1555 1555 2.03 CISPEP 1 ALA X 19 PRO X 20 0 10.91 CISPEP 2 TYR X 53 PHE X 54 0 -0.92 SITE 1 AC1 7 ASP X 12 ASP X 50 TYR X 53 ASP X 145 SITE 2 AC1 7 HIS X 221 FE2 X1306 HOH X2080 SITE 1 AC2 7 ASP X 50 ASP X 145 HIS X 184 HIS X 219 SITE 2 AC2 7 FE2 X1305 HOH X2080 HOH X2110 SITE 1 AC3 3 HIS X 22 GLU X 67 ASP X 71 SITE 1 AC4 5 ARG X 79 SER X 106 LYS X 107 ARG X 108 SITE 2 AC4 5 HOH X2147 CRYST1 94.756 94.756 144.007 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010553 0.006093 0.000000 0.00000 SCALE2 0.000000 0.012186 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006944 0.00000