PDB Short entry for 2BQZ HEADER TRANSFERASE 28-APR-05 2BQZ TITLE CRYSTAL STRUCTURE OF A TERNARY COMPLEX OF THE HUMAN HISTONE TITLE 2 METHYLTRANSFERASE PR-SET7 (ALSO KNOWN AS SET8) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SET8 PROTEIN; COMPND 3 CHAIN: A, E; COMPND 4 FRAGMENT: SET-DOMAIN, RESIDUES 192-352; COMPND 5 SYNONYM: HISTONE-LYSINE METHYLTRANSFERASE PR-SET7; COMPND 6 EC: 2.1.1.43; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: HISTONE H4; COMPND 10 CHAIN: B, F; COMPND 11 FRAGMENT: RESIDUES 17-25 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606 KEYWDS HISTONE H4 METHYLTRANSFERSAE, LYSINE METHYLTRANSFERASE, SET KEYWDS 2 DOMAIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR B.XIAO,C.JING,G.KELLY,P.A.WALKER,F.W.MUSKETT,T.A.FRENKIEL, AUTHOR 2 S.R.MARTIN,K.SARMA,D.REINBERG,S.J.GAMBLIN,J.R.WILSON REVDAT 3 24-FEB-09 2BQZ 1 VERSN REVDAT 2 23-JUN-05 2BQZ 1 SOURCE JRNL REVDAT 1 08-JUN-05 2BQZ 0 JRNL AUTH B.XIAO,C.JING,G.KELLY,P.A.WALKER,F.W.MUSKETT, JRNL AUTH 2 T.A.FRENKIEL,S.R.MARTIN,K.SARMA,D.REINBERG, JRNL AUTH 3 S.J.GAMBLIN,J.R.WILSON JRNL TITL SPECIFICITY AND MECHANISM OF THE HISTONE JRNL TITL 2 METHYLTRANSFERASE PR-SET7 JRNL REF GENES DEV. V. 19 1444 2005 JRNL REFN ISSN 0890-9369 JRNL PMID 15933069 JRNL DOI 10.1101/GAD.1315905 REMARK 2 REMARK 2 RESOLUTION. 1.5 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 3 NUMBER OF REFLECTIONS : 50828 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2663 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3734 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2550 REMARK 3 BIN FREE R VALUE SET COUNT : 202 REMARK 3 BIN FREE R VALUE : 0.3090 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2754 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 613 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.79000 REMARK 3 B22 (A**2) : -1.87000 REMARK 3 B33 (A**2) : -0.24000 REMARK 3 B12 (A**2) : 0.58000 REMARK 3 B13 (A**2) : -0.10000 REMARK 3 B23 (A**2) : 0.41000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.121 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.084 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.074 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.934 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2870 ; 0.011 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2568 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3840 ; 1.579 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5988 ; 0.722 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 334 ; 4.432 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 537 ;16.125 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 408 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3136 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 592 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 639 ; 0.322 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2633 ; 0.229 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1 ; 0.139 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 479 ; 0.211 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 58 ; 0.267 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 114 ; 0.352 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 46 ; 0.258 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1694 ; 0.893 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2696 ; 1.580 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1176 ; 2.112 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1144 ; 3.299 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 192 A 352 REMARK 3 RESIDUE RANGE : B 17 B 26 REMARK 3 ORIGIN FOR THE GROUP (A): -2.8050 0.7050 1.9790 REMARK 3 T TENSOR REMARK 3 T11: 0.3989 T22: 0.5214 REMARK 3 T33: 0.4322 T12: -0.0297 REMARK 3 T13: -0.0190 T23: -0.0244 REMARK 3 L TENSOR REMARK 3 L11: 1.5402 L22: 1.7726 REMARK 3 L33: 1.5966 L12: 0.2290 REMARK 3 L13: -0.1745 L23: -0.0687 REMARK 3 S TENSOR REMARK 3 S11: -0.0472 S12: -0.0387 S13: -0.1173 REMARK 3 S21: -0.0102 S22: 0.0294 S23: 0.0137 REMARK 3 S31: 0.0422 S32: -0.0663 S33: 0.0177 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 192 E 352 REMARK 3 RESIDUE RANGE : F 17 F 26 REMARK 3 ORIGIN FOR THE GROUP (A): 14.1550 26.9770 20.1650 REMARK 3 T TENSOR REMARK 3 T11: 0.4327 T22: 0.5326 REMARK 3 T33: 0.4111 T12: -0.0875 REMARK 3 T13: 0.0116 T23: -0.0141 REMARK 3 L TENSOR REMARK 3 L11: 1.5824 L22: 1.6109 REMARK 3 L33: 2.3888 L12: 0.2192 REMARK 3 L13: 0.8310 L23: 0.7914 REMARK 3 S TENSOR REMARK 3 S11: 0.0145 S12: -0.0078 S13: 0.0454 REMARK 3 S21: 0.0666 S22: 0.0286 S23: -0.1147 REMARK 3 S31: -0.1309 S32: 0.1389 S33: -0.0431 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : W 1 W 613 REMARK 3 ORIGIN FOR THE GROUP (A): 3.9830 12.2940 10.3700 REMARK 3 T TENSOR REMARK 3 T11: 0.1487 T22: 0.2792 REMARK 3 T33: 0.1570 T12: -0.0264 REMARK 3 T13: -0.0046 T23: -0.0061 REMARK 3 L TENSOR REMARK 3 L11: 0.5180 L22: 0.8035 REMARK 3 L33: 0.8133 L12: 0.3728 REMARK 3 L13: 0.2167 L23: 0.3249 REMARK 3 S TENSOR REMARK 3 S11: 0.0287 S12: -0.0274 S13: -0.0673 REMARK 3 S21: -0.0098 S22: -0.0156 S23: 0.0136 REMARK 3 S31: -0.0115 S32: -0.0037 S33: -0.0132 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 2BQZ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-APR-05. REMARK 100 THE PDBE ID CODE IS EBI-23835. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63273 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 19.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.1 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK 300 DETAILS:THE DIMER IN THIS ENTRY IS FORMED BY THE REMARK 300 COMPLEXOF CHAIN A WITH A PEPTIDE CHAIN B AND REMARK 300 CHAIN E WITHPEPTIDE CHAIN F. CHAINS A AND E REMARK 300 ARE MONOMERIC IN THEPHYSIOLOGICAL STATE. REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 305 - O HOH A 2238 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 REMARK 500 OE2 GLU A 197 NH2 ARG E 238 1455 2.12 REMARK 500 NH2 ARG E 238 OE2 GLU A 197 1655 2.12 REMARK 500 O HOH A 2167 O HOH A 2196 1456 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 265 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 313 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG A 324 NE - CZ - NH2 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG E 192 CB - CA - C ANGL. DEV. = -14.7 DEGREES REMARK 500 LYS E 193 N - CA - C ANGL. DEV. = -25.1 DEGREES REMARK 500 ASP E 313 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASN F 25 N - CA - C ANGL. DEV. = 16.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 194 172.63 -56.63 REMARK 500 GLU A 215 65.38 -119.67 REMARK 500 VAL A 242 -60.72 -107.09 REMARK 500 ASP B 24 113.58 -4.43 REMARK 500 ASN B 25 52.88 -145.37 REMARK 500 LYS E 193 -155.81 60.97 REMARK 500 VAL E 242 -60.43 -106.29 REMARK 500 ASP F 24 -99.77 172.52 REMARK 500 ASN F 25 164.89 64.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 LYS E 193 47.3 L L OUTSIDE RANGE REMARK 500 ASN F 25 22.8 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 SAH A 1354 REMARK 610 SAH E 1354 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH A1354 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAH E1354 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE OF CHAINS A AND E CORRESPONDS MOST CLOSELY TO REMARK 999 THE NCBI ENTRY NP_065115. THERE IS A SINGLE SEQUENCE DIFFERENCE REMARK 999 BETWEEN NP_065115 AND UNIPROT ENTRY Q86W83, AT POSITION 316, REMARK 999 WHICH IS GIVEN AS PRO IN THE NCBI ENTRY BUT ARG IN UNIPROT. DBREF 2BQZ A 192 352 UNP Q86W83 Q86W83_HUMAN 192 352 DBREF 2BQZ E 192 352 UNP Q86W83 Q86W83_HUMAN 192 352 DBREF 2BQZ B 17 25 UNP P62805 H4_HUMAN 17 25 DBREF 2BQZ B 26 26 PDB 2BQZ 2BQZ 26 26 DBREF 2BQZ F 17 25 UNP P62805 H4_HUMAN 17 25 DBREF 2BQZ F 26 26 PDB 2BQZ 2BQZ 26 26 SEQADV 2BQZ PRO A 316 UNP Q86W83 ARG 316 CONFLICT SEE REMARK 999 SEQADV 2BQZ PRO E 316 UNP Q86W83 ARG 316 CONFLICT SEE REMARK 999 SEQRES 1 A 161 ARG LYS SER LYS ALA GLU LEU GLN SER GLU GLU ARG LYS SEQRES 2 A 161 ARG ILE ASP GLU LEU ILE GLU SER GLY LYS GLU GLU GLY SEQRES 3 A 161 MET LYS ILE ASP LEU ILE ASP GLY LYS GLY ARG GLY VAL SEQRES 4 A 161 ILE ALA THR LYS GLN PHE SER ARG GLY ASP PHE VAL VAL SEQRES 5 A 161 GLU TYR HIS GLY ASP LEU ILE GLU ILE THR ASP ALA LYS SEQRES 6 A 161 LYS ARG GLU ALA LEU TYR ALA GLN ASP PRO SER THR GLY SEQRES 7 A 161 CYS TYR MET TYR TYR PHE GLN TYR LEU SER LYS THR TYR SEQRES 8 A 161 CYS VAL ASP ALA THR ARG GLU THR ASN ARG LEU GLY ARG SEQRES 9 A 161 LEU ILE ASN HIS SER LYS CYS GLY ASN CYS GLN THR LYS SEQRES 10 A 161 LEU HIS ASP ILE ASP GLY VAL PRO HIS LEU ILE LEU ILE SEQRES 11 A 161 ALA SER ARG ASP ILE ALA ALA GLY GLU GLU LEU LEU TYR SEQRES 12 A 161 ASP TYR GLY ASP ARG SER LYS ALA SER ILE GLU ALA HIS SEQRES 13 A 161 PRO TRP LEU LYS HIS SEQRES 1 B 10 ARG HIS ARG MLZ VAL LEU ARG ASP ASN TYR SEQRES 1 E 161 ARG LYS SER LYS ALA GLU LEU GLN SER GLU GLU ARG LYS SEQRES 2 E 161 ARG ILE ASP GLU LEU ILE GLU SER GLY LYS GLU GLU GLY SEQRES 3 E 161 MET LYS ILE ASP LEU ILE ASP GLY LYS GLY ARG GLY VAL SEQRES 4 E 161 ILE ALA THR LYS GLN PHE SER ARG GLY ASP PHE VAL VAL SEQRES 5 E 161 GLU TYR HIS GLY ASP LEU ILE GLU ILE THR ASP ALA LYS SEQRES 6 E 161 LYS ARG GLU ALA LEU TYR ALA GLN ASP PRO SER THR GLY SEQRES 7 E 161 CYS TYR MET TYR TYR PHE GLN TYR LEU SER LYS THR TYR SEQRES 8 E 161 CYS VAL ASP ALA THR ARG GLU THR ASN ARG LEU GLY ARG SEQRES 9 E 161 LEU ILE ASN HIS SER LYS CYS GLY ASN CYS GLN THR LYS SEQRES 10 E 161 LEU HIS ASP ILE ASP GLY VAL PRO HIS LEU ILE LEU ILE SEQRES 11 E 161 ALA SER ARG ASP ILE ALA ALA GLY GLU GLU LEU LEU TYR SEQRES 12 E 161 ASP TYR GLY ASP ARG SER LYS ALA SER ILE GLU ALA HIS SEQRES 13 E 161 PRO TRP LEU LYS HIS SEQRES 1 F 10 ARG HIS ARG MLZ VAL LEU ARG ASP ASN TYR MODRES 2BQZ MLZ B 20 LYS N-METHYL-LYSINE MODRES 2BQZ MLZ F 20 LYS N-METHYL-LYSINE HET MLZ B 20 10 HET MLZ F 20 10 HET SAH A1354 25 HET SAH E1354 25 HETNAM MLZ N-METHYL-LYSINE HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE FORMUL 2 MLZ 2(C7 H16 N2 O2) FORMUL 5 SAH 2(C14 H20 N6 O5 S) FORMUL 7 HOH *613(H2 O1) HELIX 1 1 SER A 194 GLY A 213 1 20 HELIX 2 2 ILE A 252 GLN A 264 1 13 HELIX 3 3 LEU A 293 ILE A 297 5 5 HELIX 4 4 SER A 340 HIS A 347 1 8 HELIX 5 5 PRO A 348 HIS A 352 5 5 HELIX 6 6 SER E 194 GLY E 213 1 20 HELIX 7 7 ILE E 252 GLN E 264 1 13 HELIX 8 8 LEU E 293 ILE E 297 5 5 HELIX 9 9 SER E 340 HIS E 347 1 8 HELIX 10 10 PRO E 348 HIS E 352 5 5 SHEET 1 AA 2 MET A 218 ILE A 223 0 SHEET 2 AA 2 GLY A 227 ALA A 232 -1 O GLY A 227 N ILE A 223 SHEET 1 AB 3 PHE A 241 TYR A 245 0 SHEET 2 AB 3 VAL A 315 ALA A 322 -1 O LEU A 318 N TYR A 245 SHEET 3 AB 3 CYS A 305 ILE A 312 -1 O GLN A 306 N ILE A 321 SHEET 1 AC 3 ASP A 248 GLU A 251 0 SHEET 2 AC 3 LYS A 280 ASP A 285 -1 O CYS A 283 N ILE A 250 SHEET 3 AC 3 MET A 272 TYR A 277 -1 O TYR A 273 N VAL A 284 SHEET 1 AD 2 ASN A 298 HIS A 299 0 SHEET 2 AD 2 LEU A 333 TYR A 334 1 N TYR A 334 O ASN A 298 SHEET 1 EA 2 MET E 218 ILE E 223 0 SHEET 2 EA 2 GLY E 227 ALA E 232 -1 O GLY E 227 N ILE E 223 SHEET 1 EB 3 PHE E 241 GLU E 244 0 SHEET 2 EB 3 VAL E 315 ALA E 322 -1 O LEU E 320 N VAL E 242 SHEET 3 EB 3 CYS E 305 ILE E 312 -1 O GLN E 306 N ILE E 321 SHEET 1 EC 3 ASP E 248 GLU E 251 0 SHEET 2 EC 3 LYS E 280 ASP E 285 -1 O CYS E 283 N ILE E 250 SHEET 3 EC 3 MET E 272 TYR E 277 -1 O TYR E 273 N VAL E 284 SHEET 1 ED 2 ASN E 298 HIS E 299 0 SHEET 2 ED 2 LEU E 333 TYR E 334 1 N TYR E 334 O ASN E 298 LINK C ARG B 19 N MLZ B 20 1555 1555 1.34 LINK C MLZ B 20 N VAL B 21 1555 1555 1.44 LINK C ARG F 19 N MLZ F 20 1555 1555 1.31 LINK C MLZ F 20 N VAL F 21 1555 1555 1.39 SITE 1 AC1 16 GLY A 225 LYS A 226 ARG A 228 TYR A 271 SITE 2 AC1 16 ARG A 295 LEU A 296 ASN A 298 HIS A 299 SITE 3 AC1 16 TYR A 336 TRP A 349 HOH A2315 HOH A2317 SITE 4 AC1 16 HOH A2318 HIS B 18 MLZ B 20 HOH E2136 SITE 1 AC2 20 HOH A2159 ARG B 23 HOH B2012 GLY E 225 SITE 2 AC2 20 LYS E 226 ARG E 228 TYR E 271 ARG E 295 SITE 3 AC2 20 LEU E 296 ASN E 298 HIS E 299 TYR E 336 SITE 4 AC2 20 TRP E 349 HOH E2123 HOH E2245 HOH E2246 SITE 5 AC2 20 HOH E2247 HOH E2248 HIS F 18 MLZ F 20 CRYST1 42.179 46.322 51.998 64.74 86.66 90.61 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023708 0.000252 -0.001651 0.00000 SCALE2 0.000000 0.021589 -0.010227 0.00000 SCALE3 0.000000 0.000000 0.021316 0.00000 MTRIX1 1 -0.983220 -0.122620 0.135050 11.66670 1 MTRIX2 1 -0.047420 -0.543070 -0.838350 32.69479 1 MTRIX3 1 0.176140 -0.830690 0.528140 11.51827 1