PDB Short entry for 2BUG HEADER HYDROLASE 13-JUN-05 2BUG TITLE SOLUTION STRUCTURE OF THE TPR DOMAIN FROM PROTEIN PHOSPHATASE 5 IN TITLE 2 COMPLEX WITH HSP90 DERIVED PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE PROTEIN PHOSPHATASE 5; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TETRATRICOPEPTIDE DOMAIN, RESIDUES 19-147; COMPND 5 SYNONYM: PROTEIN PHOSPHATASE 5, PP5, PPT; COMPND 6 EC: 3.1.3.16; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 OTHER_DETAILS: RESIDUES 19-147 WITH N-TERMINAL HIS-TAG; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: HSP90; COMPND 12 CHAIN: B; COMPND 13 FRAGMENT: C-TERMINAL PENTAPEPTIDE, RESIDUES 1-5; COMPND 14 SYNONYM: DSCR1; COMPND 15 ENGINEERED: YES; COMPND 16 OTHER_DETAILS: N-TERMINALLY ACETYLATED SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PQE31; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606 KEYWDS TETRATRICOPEPTIDE DOMAIN, PROTEIN PHOSPHATASE, HSP90 BINDING, KEYWDS 2 HYDROLASE, IRON, MANGANESE, METAL-BINDING EXPDTA SOLUTION NMR NUMMDL 19 AUTHOR M.J.CLIFF,R.HARRIS,D.BARFORD,J.E.LADBURY,M.A.WILLIAMS REVDAT 3 15-JAN-20 2BUG 1 LINK REVDAT 2 24-FEB-09 2BUG 1 VERSN REVDAT 1 16-MAR-06 2BUG 0 JRNL AUTH M.J.CLIFF,R.HARRIS,D.BARFORD,J.E.LADBURY,M.A.WILLIAMS JRNL TITL CONFORMATIONAL DIVERSITY IN THE TPR DOMAIN-MEDIATED JRNL TITL 2 INTERACTION OF PROTEIN PHOSPHATASE 5 WITH HSP90. JRNL REF STRUCTURE V. 14 415 2006 JRNL REFN ISSN 0969-2126 JRNL PMID 16531226 JRNL DOI 10.1016/J.STR.2005.12.009 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS, GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, RICE, REMARK 3 SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN REMARK 3 JOURNAL CITATION ABOVE REMARK 4 REMARK 4 2BUG COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-JUN-05. REMARK 100 THE DEPOSITION ID IS D_1290024024. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.0; 298.0; 298.0; 298.0 REMARK 210 PH : 6.0; 6.0; 6.0; 6.0 REMARK 210 IONIC STRENGTH : 55; 55; 55; 55 REMARK 210 PRESSURE : 1.0 ATM; 1.0 ATM; 1.0 ATM; 1.0 REMARK 210 ATM REMARK 210 SAMPLE CONTENTS : 50MM MES, 5MM DTT (PH6.0) REMARK 210 10%D2O, 90% H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : HNCA; HNCO; CBCACONH; 1H15N- REMARK 210 TOWNY-HSQC; HNHB; 1H15N- REMARK 210 NOESYHSQC; 1H13CNOESYHSQC; TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ARIA 1.2 REMARK 210 METHOD USED : ARIA REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 19 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST RESTRAINT ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 4 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING DISTANCE RESTRAINTS REMARK 210 DETERMINED FROM 1H13C-NOESYHSQC (13C,15N- LABELLED PROTEIN) AND REMARK 210 1H15N-NOESYHSQC EXPERIMENTS (15N- LABELLED PROTEIN), AND ALSO REMARK 210 HYDROGEN BOND RESTRAINTS FROM HYDROGEN EXCHANGE DATE, ANGLE REMARK 210 RESTRAINTS DERIVED FROM CHEMICAL SHIFT DATA BY TALOS. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, GLY 83 TO ASN REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-19 REMARK 465 RES C SSSEQI REMARK 465 MET A 8 REMARK 465 SER A 9 REMARK 465 GLY A 10 REMARK 465 HIS A 11 REMARK 465 HIS A 12 REMARK 465 HIS A 13 REMARK 465 HIS A 14 REMARK 465 HIS A 15 REMARK 465 HIS A 16 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ1 LYS A 135 OE2 GLU A 138 1.58 REMARK 500 HZ3 LYS A 40 OE2 GLU B 2 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 14 TYR A 80 CE1 TYR A 80 CZ 0.104 REMARK 500 14 TYR A 80 CZ TYR A 80 CE2 -0.106 REMARK 500 15 TYR A 99 CE1 TYR A 99 CZ 0.109 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 22 -101.39 -38.51 REMARK 500 1 PRO A 59 -64.60 -107.81 REMARK 500 1 CYS A 77 36.62 -89.64 REMARK 500 2 ASP A 22 -101.10 -39.10 REMARK 500 2 PRO A 59 -79.28 -107.86 REMARK 500 2 THR A 75 -84.64 -83.37 REMARK 500 2 GLU A 76 22.85 -175.73 REMARK 500 3 ASP A 22 30.07 -79.83 REMARK 500 3 PRO A 59 -79.80 -108.97 REMARK 500 3 THR A 75 33.60 -88.99 REMARK 500 3 GLU B 2 -153.15 -84.22 REMARK 500 3 GLU B 3 156.21 75.20 REMARK 500 4 ASP A 18 -178.26 -65.32 REMARK 500 4 ASP A 22 -101.61 -38.91 REMARK 500 4 PRO A 59 -82.22 -108.27 REMARK 500 4 SER A 60 45.65 -83.72 REMARK 500 4 THR A 75 -83.98 -77.02 REMARK 500 4 GLU A 76 17.99 -174.64 REMARK 500 5 ASP A 18 -178.69 -64.26 REMARK 500 5 ASP A 22 -100.87 -39.05 REMARK 500 5 PRO A 59 -74.97 -108.39 REMARK 500 5 THR A 75 -83.40 -76.41 REMARK 500 5 GLU A 76 21.73 -177.11 REMARK 500 6 ASP A 22 -100.16 -39.64 REMARK 500 6 PRO A 59 -71.25 -106.21 REMARK 500 6 CYS A 77 35.43 -95.77 REMARK 500 7 ASP A 18 -178.45 -68.31 REMARK 500 7 ASP A 22 -100.89 -39.56 REMARK 500 7 LEU A 57 -60.45 -96.41 REMARK 500 7 PRO A 59 -87.65 -109.11 REMARK 500 7 CYS A 77 36.44 -98.64 REMARK 500 8 ASP A 22 30.32 -80.35 REMARK 500 8 PRO A 59 -85.06 -108.57 REMARK 500 8 THR A 75 -84.91 -76.41 REMARK 500 8 GLU A 76 23.24 -175.25 REMARK 500 8 VAL B 4 -85.18 41.72 REMARK 500 9 ASP A 22 -99.15 -39.45 REMARK 500 9 PRO A 59 -83.43 -109.02 REMARK 500 9 CYS A 77 36.02 -94.15 REMARK 500 9 GLU B 2 66.16 -158.46 REMARK 500 9 VAL B 4 70.18 43.05 REMARK 500 10 ASP A 22 29.68 -78.96 REMARK 500 10 LYS A 42 9.14 80.76 REMARK 500 10 PRO A 59 -78.56 -108.90 REMARK 500 10 THR A 75 -83.13 -76.37 REMARK 500 10 GLU A 76 29.32 -179.22 REMARK 500 10 GLU B 2 -81.55 -165.66 REMARK 500 10 GLU B 3 -33.92 -178.89 REMARK 500 10 VAL B 4 -86.99 26.57 REMARK 500 11 ASP A 22 -100.65 -39.11 REMARK 500 REMARK 500 THIS ENTRY HAS 100 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 15 TYR A 99 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1A17 RELATED DB: PDB REMARK 900 TETRATRICOPEPTIDE REPEATS OF PROTEIN PHOSPHATASE 5 REMARK 900 RELATED ID: 1S95 RELATED DB: PDB REMARK 900 STRUCTURE OF SERINE/THREONINE PROTEIN PHOSPHATASE 5 REMARK 900 RELATED ID: 1WAO RELATED DB: PDB REMARK 900 PP5 STRUCTURE REMARK 900 RELATED ID: 6696 RELATED DB: BMRB REMARK 999 REMARK 999 SEQUENCE REMARK 999 G83N MUTATION AND N-TERMINAL HIS TAG DBREF 2BUG A 8 18 PDB 2BUG 2BUG 8 18 DBREF 2BUG A 19 147 UNP P53041 PPP5_HUMAN 19 147 DBREF 2BUG B 0 0 PDB 2BUG 2BUG 0 0 DBREF 2BUG B 1 5 UNP Q9H2A1 Q9H2A1_HUMAN 1 5 SEQADV 2BUG ASN A 83 UNP P53041 GLY 83 ENGINEERED MUTATION SEQRES 1 A 140 MET SER GLY HIS HIS HIS HIS HIS HIS THR ASP PRO PRO SEQRES 2 A 140 ALA ASP GLY ALA LEU LYS ARG ALA GLU GLU LEU LYS THR SEQRES 3 A 140 GLN ALA ASN ASP TYR PHE LYS ALA LYS ASP TYR GLU ASN SEQRES 4 A 140 ALA ILE LYS PHE TYR SER GLN ALA ILE GLU LEU ASN PRO SEQRES 5 A 140 SER ASN ALA ILE TYR TYR GLY ASN ARG SER LEU ALA TYR SEQRES 6 A 140 LEU ARG THR GLU CYS TYR GLY TYR ALA LEU ASN ASP ALA SEQRES 7 A 140 THR ARG ALA ILE GLU LEU ASP LYS LYS TYR ILE LYS GLY SEQRES 8 A 140 TYR TYR ARG ARG ALA ALA SER ASN MET ALA LEU GLY LYS SEQRES 9 A 140 PHE ARG ALA ALA LEU ARG ASP TYR GLU THR VAL VAL LYS SEQRES 10 A 140 VAL LYS PRO HIS ASP LYS ASP ALA LYS MET LYS TYR GLN SEQRES 11 A 140 GLU CYS ASN LYS ILE VAL LYS GLN LYS ALA SEQRES 1 B 6 ACE MET GLU GLU VAL ASP HET ACE B 0 6 HETNAM ACE ACETYL GROUP FORMUL 2 ACE C2 H4 O HELIX 1 1 ALA A 21 ALA A 41 1 21 HELIX 2 2 ASP A 43 ASN A 58 1 16 HELIX 3 3 ASN A 61 THR A 75 1 15 HELIX 4 4 CYS A 77 ASP A 92 1 16 HELIX 5 5 TYR A 95 GLY A 110 1 16 HELIX 6 6 LYS A 111 LYS A 126 1 16 HELIX 7 7 ASP A 129 LYS A 146 1 18 LINK C ACE B 0 N MET B 1 1555 1555 1.34 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000