PDB Short entry for 2C5R
HEADER    DNA-BINDING PROTEIN/DNA                 31-OCT-05   2C5R              
TITLE     THE STRUCTURE OF PHAGE PHI29 REPLICATION ORGANIZER PROTEIN P16.7 IN   
TITLE    2 COMPLEX WITH DOUBLE STRANDED DNA                                     
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: EARLY PROTEIN P16.7;                                       
COMPND   3 CHAIN: A, B, C, D, E, F;                                             
COMPND   4 FRAGMENT: RESIDUES 64-130;                                           
COMPND   5 ENGINEERED: YES;                                                     
COMPND   6 OTHER_DETAILS: DSDNA AND SSDNA BINDING PROTEIN;                      
COMPND   7 MOL_ID: 2;                                                           
COMPND   8 MOLECULE: 5'-D(*TP*CP*CP*AP*CP*CP*GP*GP)-3';                         
COMPND   9 CHAIN: Y;                                                            
COMPND  10 ENGINEERED: YES;                                                     
COMPND  11 MOL_ID: 3;                                                           
COMPND  12 MOLECULE: 5'-D(*CP*CP*GP*GP*TP*GP*GP*AP)-3';                         
COMPND  13 CHAIN: Z;                                                            
COMPND  14 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: BACILLUS PHAGE PHI29;                           
SOURCE   3 ORGANISM_TAXID: 10756;                                               
SOURCE   4 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   5 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   6 MOL_ID: 2;                                                           
SOURCE   7 SYNTHETIC: YES;                                                      
SOURCE   8 MOL_ID: 3;                                                           
SOURCE   9 SYNTHETIC: YES                                                       
KEYWDS    DNA-BINDING PROTEIN-DNA COMPLEX, DNA-BINDING PROTEIN, COMPLEX (DNA-   
KEYWDS   2 BINDING PROTEIN-DNA)                                                 
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    A.ALBERT,M.JIMENEZ,D.MUNOZ-ESPIN,J.L.ASENSIO,J.A.HERMOSO,M.SALAS,     
AUTHOR   2 W.J.J.MEIJER                                                         
REVDAT   6   13-DEC-23 2C5R    1       REMARK                                   
REVDAT   5   13-JUL-11 2C5R    1       VERSN                                    
REVDAT   4   24-FEB-09 2C5R    1       VERSN                                    
REVDAT   3   04-JAN-06 2C5R    1       JRNL                                     
REVDAT   2   17-NOV-05 2C5R    1       JRNL                                     
REVDAT   1   08-NOV-05 2C5R    0                                                
JRNL        AUTH   A.ALBERT,D.MUNOZ-ESPIN,M.JIMENEZ,J.L.ASENSIO,J.A.HERMOSO,    
JRNL        AUTH 2 M.SALAS,W.J.J.MEIJER                                         
JRNL        TITL   STRUCTURAL BASIS FOR MEMBRANE ANCHORAGE OF VIRAL PHI 29 DNA  
JRNL        TITL 2 DURING REPLICATION.                                          
JRNL        REF    J.BIOL.CHEM.                  V. 280 42486 2005              
JRNL        REFN                   ISSN 0021-9258                               
JRNL        PMID   16275651                                                     
JRNL        DOI    10.1074/JBC.C500429200                                       
REMARK   2                                                                      
REMARK   2 RESOLUTION.    2.90 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : REFMAC 5.1.24                                        
REMARK   3   AUTHORS     : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,              
REMARK   3               : NICHOLLS,WINN,LONG,VAGIN                             
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : MAXIMUM LIKELIHOOD                            
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 50.00                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : NULL                           
REMARK   3   COMPLETENESS FOR RANGE        (%) : 95.8                           
REMARK   3   NUMBER OF REFLECTIONS             : 12386                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : THROUGHOUT                      
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                          
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.254                           
REMARK   3   R VALUE            (WORKING SET) : 0.251                           
REMARK   3   FREE R VALUE                     : 0.292                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 7.200                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 960                             
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : 20                           
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : 2.90                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : 2.98                         
REMARK   3   REFLECTION IN BIN     (WORKING SET) : 864                          
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : NULL                         
REMARK   3   BIN R VALUE           (WORKING SET) : 0.3150                       
REMARK   3   BIN FREE R VALUE SET COUNT          : 67                           
REMARK   3   BIN FREE R VALUE                    : 0.3940                       
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 3156                                    
REMARK   3   NUCLEIC ACID ATOMS       : 328                                     
REMARK   3   HETEROGEN ATOMS          : 0                                       
REMARK   3   SOLVENT ATOMS            : 51                                      
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   B VALUE TYPE : LIKELY RESIDUAL                                     
REMARK   3   FROM WILSON PLOT           (A**2) : NULL                           
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 51.71                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : -2.67000                                             
REMARK   3    B22 (A**2) : -0.14000                                             
REMARK   3    B33 (A**2) : 2.81000                                              
REMARK   3    B12 (A**2) : 0.00000                                              
REMARK   3    B13 (A**2) : 0.00000                                              
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  ESTIMATED OVERALL COORDINATE ERROR.                                 
REMARK   3   ESU BASED ON R VALUE                            (A): NULL          
REMARK   3   ESU BASED ON FREE R VALUE                       (A): 0.470         
REMARK   3   ESU BASED ON MAXIMUM LIKELIHOOD                 (A): 0.418         
REMARK   3   ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 22.380        
REMARK   3                                                                      
REMARK   3 CORRELATION COEFFICIENTS.                                            
REMARK   3   CORRELATION COEFFICIENT FO-FC      : 0.930                         
REMARK   3   CORRELATION COEFFICIENT FO-FC FREE : 0.906                         
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES        COUNT    RMS    WEIGHT      
REMARK   3   BOND LENGTHS REFINED ATOMS        (A):  3558 ; 0.028 ; 0.021       
REMARK   3   BOND LENGTHS OTHERS               (A):  NULL ;  NULL ;  NULL       
REMARK   3   BOND ANGLES REFINED ATOMS   (DEGREES):  4874 ; 2.218 ; 2.087       
REMARK   3   BOND ANGLES OTHERS          (DEGREES):  NULL ;  NULL ;  NULL       
REMARK   3   TORSION ANGLES, PERIOD 1    (DEGREES):   372 ; 7.900 ; 5.000       
REMARK   3   TORSION ANGLES, PERIOD 2    (DEGREES):  NULL ;  NULL ;  NULL       
REMARK   3   TORSION ANGLES, PERIOD 3    (DEGREES):  NULL ;  NULL ;  NULL       
REMARK   3   TORSION ANGLES, PERIOD 4    (DEGREES):  NULL ;  NULL ;  NULL       
REMARK   3   CHIRAL-CENTER RESTRAINTS       (A**3):   540 ; 0.146 ; 0.200       
REMARK   3   GENERAL PLANES REFINED ATOMS      (A):  2580 ; 0.009 ; 0.020       
REMARK   3   GENERAL PLANES OTHERS             (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED CONTACTS REFINED ATOMS (A):  1598 ; 0.279 ; 0.200       
REMARK   3   NON-BONDED CONTACTS OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED TORSION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED TORSION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3   H-BOND (X...Y) REFINED ATOMS      (A):   117 ; 0.252 ; 0.200       
REMARK   3   H-BOND (X...Y) OTHERS             (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION REFINED ATOMS (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY VDW REFINED ATOMS        (A):    62 ; 0.251 ; 0.200       
REMARK   3   SYMMETRY VDW OTHERS               (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY H-BOND REFINED ATOMS     (A):     7 ; 0.477 ; 0.200       
REMARK   3   SYMMETRY H-BOND OTHERS            (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.     COUNT   RMS    WEIGHT      
REMARK   3   MAIN-CHAIN BOND REFINED ATOMS  (A**2):  1890 ; 0.397 ; 1.500       
REMARK   3   MAIN-CHAIN BOND OTHER ATOMS    (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   MAIN-CHAIN ANGLE REFINED ATOMS (A**2):  3066 ; 0.707 ; 2.000       
REMARK   3   MAIN-CHAIN ANGLE OTHER ATOMS   (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN BOND REFINED ATOMS  (A**2):  1668 ; 1.128 ; 3.000       
REMARK   3   SIDE-CHAIN BOND OTHER ATOMS    (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN ANGLE REFINED ATOMS (A**2):  1808 ; 1.762 ; 4.500       
REMARK   3   SIDE-CHAIN ANGLE OTHER ATOMS   (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   LONG RANGE B REFINED ATOMS     (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   LONG RANGE B OTHER ATOMS       (A**2):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3 ANISOTROPIC THERMAL FACTOR RESTRAINTS.    COUNT   RMS   WEIGHT       
REMARK   3   RIGID-BOND RESTRAINTS          (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; FREE ATOMS         (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; BONDED ATOMS       (A**2):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS STATISTICS                                           
REMARK   3   NUMBER OF DIFFERENT NCS GROUPS : 1                                 
REMARK   3                                                                      
REMARK   3  NCS GROUP NUMBER               : 1                                  
REMARK   3     CHAIN NAMES                    : A B C D E F                     
REMARK   3     NUMBER OF COMPONENTS NCS GROUP : 1                               
REMARK   3       COMPONENT C  SSSEQI  TO  C   SSSEQI   CODE                     
REMARK   3           1     A      8       A      62      6                      
REMARK   3           1     B      8       B      62      6                      
REMARK   3           1     C      8       C      62      6                      
REMARK   3           1     D      8       D      62      6                      
REMARK   3           1     E      8       E      62      6                      
REMARK   3           1     F      8       F      62      6                      
REMARK   3                   GROUP CHAIN        COUNT   RMS     WEIGHT          
REMARK   3   LOOSE POSITIONAL   1    A    (A):    459 ;  0.19 ;  5.00           
REMARK   3   LOOSE POSITIONAL   1    B    (A):    459 ;  0.21 ;  5.00           
REMARK   3   LOOSE POSITIONAL   1    C    (A):    459 ;  0.19 ;  5.00           
REMARK   3   LOOSE POSITIONAL   1    D    (A):    459 ;  0.22 ;  5.00           
REMARK   3   LOOSE POSITIONAL   1    E    (A):    459 ;  0.21 ;  5.00           
REMARK   3   LOOSE POSITIONAL   1    F    (A):    459 ;  0.35 ;  5.00           
REMARK   3   LOOSE THERMAL      1    A (A**2):    459 ;  1.17 ; 10.00           
REMARK   3   LOOSE THERMAL      1    B (A**2):    459 ;  1.20 ; 10.00           
REMARK   3   LOOSE THERMAL      1    C (A**2):    459 ;  1.02 ; 10.00           
REMARK   3   LOOSE THERMAL      1    D (A**2):    459 ;  1.02 ; 10.00           
REMARK   3   LOOSE THERMAL      1    E (A**2):    459 ;  1.18 ; 10.00           
REMARK   3   LOOSE THERMAL      1    F (A**2):    459 ;  1.25 ; 10.00           
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : 2                                          
REMARK   3                                                                      
REMARK   3   TLS GROUP : 1                                                      
REMARK   3    NUMBER OF COMPONENTS GROUP : 6                                    
REMARK   3    COMPONENTS        C SSSEQI   TO  C SSSEQI                         
REMARK   3    RESIDUE RANGE :   A     7        A    69                          
REMARK   3    RESIDUE RANGE :   B     7        B    69                          
REMARK   3    RESIDUE RANGE :   C     7        C    69                          
REMARK   3    RESIDUE RANGE :   D     7        D    69                          
REMARK   3    RESIDUE RANGE :   E     7        E    69                          
REMARK   3    RESIDUE RANGE :   F     7        F    69                          
REMARK   3    ORIGIN FOR THE GROUP (A):  20.1400   9.7025  14.2285              
REMARK   3    T TENSOR                                                          
REMARK   3      T11:   0.0542 T22:   0.3400                                     
REMARK   3      T33:   0.1975 T12:  -0.0566                                     
REMARK   3      T13:   0.1014 T23:  -0.0584                                     
REMARK   3    L TENSOR                                                          
REMARK   3      L11:   2.0447 L22:   4.3077                                     
REMARK   3      L33:   2.7576 L12:  -1.2069                                     
REMARK   3      L13:  -0.3363 L23:   1.4267                                     
REMARK   3    S TENSOR                                                          
REMARK   3      S11:  -0.2690 S12:  -0.1114 S13:  -0.0341                       
REMARK   3      S21:  -0.0558 S22:   0.1239 S23:   0.0500                       
REMARK   3      S31:   0.0022 S32:  -0.1843 S33:   0.1451                       
REMARK   3                                                                      
REMARK   3   TLS GROUP : 2                                                      
REMARK   3    NUMBER OF COMPONENTS GROUP : 2                                    
REMARK   3    COMPONENTS        C SSSEQI   TO  C SSSEQI                         
REMARK   3    RESIDUE RANGE :   Y     9        Y    16                          
REMARK   3    RESIDUE RANGE :   Z     1        Z     8                          
REMARK   3    ORIGIN FOR THE GROUP (A):  19.9246  18.0440  -1.5662              
REMARK   3    T TENSOR                                                          
REMARK   3      T11:   1.3280 T22:   0.7389                                     
REMARK   3      T33:   0.7471 T12:   0.1334                                     
REMARK   3      T13:  -0.0731 T23:  -0.0205                                     
REMARK   3    L TENSOR                                                          
REMARK   3      L11:  79.1442 L22:  30.5486                                     
REMARK   3      L33:  30.0794 L12:   3.3714                                     
REMARK   3      L13:  -8.6290 L23:   0.2633                                     
REMARK   3    S TENSOR                                                          
REMARK   3      S11:  -2.1194 S12:  -0.2170 S13:   1.2836                       
REMARK   3      S21:  -0.7267 S22:   1.3863 S23:  -1.3732                       
REMARK   3      S31:  -0.9213 S32:   0.0255 S33:   0.7330                       
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED : MASK                                                 
REMARK   3   PARAMETERS FOR MASK CALCULATION                                    
REMARK   3   VDW PROBE RADIUS   : 1.40                                          
REMARK   3   ION PROBE RADIUS   : 0.80                                          
REMARK   3   SHRINKAGE RADIUS   : 0.80                                          
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING   
REMARK   3  POSITIONS.                                                          
REMARK   4                                                                      
REMARK   4 2C5R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-OCT-05.                  
REMARK 100 THE DEPOSITION ID IS D_1290025645.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : NULL                               
REMARK 200  TEMPERATURE           (KELVIN) : 173.0                              
REMARK 200  PH                             : NULL                               
REMARK 200  NUMBER OF CRYSTALS USED        : NULL                               
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : ESRF                               
REMARK 200  BEAMLINE                       : BM16                               
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 0.91                               
REMARK 200  MONOCHROMATOR                  : NULL                               
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : MARRESEARCH                        
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : MOSFLM                             
REMARK 200  DATA SCALING SOFTWARE          : SCALA                              
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 12368                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 2.900                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 50.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : 0.000                              
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 96.2                               
REMARK 200  DATA REDUNDANCY                : 4.900                              
REMARK 200  R MERGE                    (I) : 0.06000                            
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 8.0000                             
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 3.06                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 90.7                               
REMARK 200  DATA REDUNDANCY IN SHELL       : 4.10                               
REMARK 200  R MERGE FOR SHELL          (I) : 0.36000                            
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 2.100                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: AMORE                                                 
REMARK 200 STARTING MODEL: PDB ENTRY 2BNK                                       
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 59.20                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.04                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: NULL                                     
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21                       
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X+1/2,-Y,Z+1/2                                         
REMARK 290       3555   -X,Y+1/2,-Z+1/2                                         
REMARK 290       4555   X+1/2,-Y+1/2,-Z                                         
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000       32.75250            
REMARK 290   SMTRY2   2  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000       63.68000            
REMARK 290   SMTRY1   3 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   3  0.000000  1.000000  0.000000       36.05550            
REMARK 290   SMTRY3   3  0.000000  0.000000 -1.000000       63.68000            
REMARK 290   SMTRY1   4  1.000000  0.000000  0.000000       32.75250            
REMARK 290   SMTRY2   4  0.000000 -1.000000  0.000000       36.05550            
REMARK 290   SMTRY3   4  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC                         
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC                  
REMARK 350 SOFTWARE USED: PQS                                                   
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, Y, Z                
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     LYS A    63                                                      
REMARK 465     THR A    64                                                      
REMARK 465     VAL A    65                                                      
REMARK 465     LYS B    63                                                      
REMARK 465     THR B    64                                                      
REMARK 465     VAL B    65                                                      
REMARK 465     LYS C    63                                                      
REMARK 465     THR C    64                                                      
REMARK 465     VAL C    65                                                      
REMARK 465     LYS D    63                                                      
REMARK 465     THR D    64                                                      
REMARK 465     VAL D    65                                                      
REMARK 465     LYS E    63                                                      
REMARK 465     THR E    64                                                      
REMARK 465     VAL E    65                                                      
REMARK 465     LYS F    63                                                      
REMARK 465     THR F    64                                                      
REMARK 465     VAL F    65                                                      
REMARK 470                                                                      
REMARK 470 MISSING ATOM                                                         
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;           
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;          
REMARK 470 I=INSERTION CODE):                                                   
REMARK 470   M RES CSSEQI  ATOMS                                                
REMARK 470     LYS A 129    CA   C    O    CB   CG   CD   CE                    
REMARK 470     LYS A 129    NZ                                                  
REMARK 470     LYS B 129    CA   C    O    CB   CG   CD   CE                    
REMARK 470     LYS B 129    NZ                                                  
REMARK 470     LYS C 129    CA   C    O    CB   CG   CD   CE                    
REMARK 470     LYS C 129    NZ                                                  
REMARK 470     LYS D 129    CA   C    O    CB   CG   CD   CE                    
REMARK 470     LYS D 129    NZ                                                  
REMARK 470     LYS E 129    CA   C    O    CB   CG   CD   CE                    
REMARK 470     LYS E 129    NZ                                                  
REMARK 470     LYS F 129    CA   C    O    CB   CG   CD   CE                    
REMARK 470     LYS F 129    NZ                                                  
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT                     
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500   O    SER A   127     N    LYS A   129              1.64            
REMARK 500   N2    DG Z     6     O    HOH Z  2003              2.05            
REMARK 500   OE2  GLU F   118     O    HOH F  2004              2.17            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS                                      
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)               
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   RES CSSEQI ATM2   DEVIATION                     
REMARK 500    SER B  68   CB    SER B  68   OG      0.089                       
REMARK 500    GLU B  71   CG    GLU B  71   CD      0.126                       
REMARK 500    SER D  68   CB    SER D  68   OG      0.106                       
REMARK 500     DC Y  10   C2     DC Y  10   N3      0.049                       
REMARK 500     DC Y  10   N3     DC Y  10   C4     -0.046                       
REMARK 500     DC Y  13   C2     DC Y  13   N3      0.049                       
REMARK 500     DC Y  14   C2     DC Y  14   N3      0.050                       
REMARK 500     DC Z   1   C2     DC Z   1   N3      0.052                       
REMARK 500     DC Z   2   C2     DC Z   2   N3      0.056                       
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                       
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)              
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                     
REMARK 500    ASP A  88   CB  -  CG  -  OD2 ANGL. DEV. =   8.2 DEGREES          
REMARK 500    LEU A 128   CA  -  C   -  O   ANGL. DEV. =  27.9 DEGREES          
REMARK 500    LEU B  67   CA  -  CB  -  CG  ANGL. DEV. =  16.0 DEGREES          
REMARK 500    ASP B  92   CB  -  CG  -  OD2 ANGL. DEV. =   5.5 DEGREES          
REMARK 500    ARG B 112   NE  -  CZ  -  NH1 ANGL. DEV. =   3.6 DEGREES          
REMARK 500    ARG C 112   NE  -  CZ  -  NH1 ANGL. DEV. =   3.3 DEGREES          
REMARK 500    ASP D  92   CB  -  CG  -  OD2 ANGL. DEV. =   5.4 DEGREES          
REMARK 500    ARG D 112   NE  -  CZ  -  NH1 ANGL. DEV. =   3.1 DEGREES          
REMARK 500    ARG D 112   NE  -  CZ  -  NH2 ANGL. DEV. =  -3.2 DEGREES          
REMARK 500    ARG E 125   NE  -  CZ  -  NH2 ANGL. DEV. =   3.1 DEGREES          
REMARK 500    ARG F 112   NE  -  CZ  -  NH1 ANGL. DEV. =   4.0 DEGREES          
REMARK 500    LEU F 128   O   -  C   -  N   ANGL. DEV. = -10.8 DEGREES          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    ASN A  95       49.52    -68.77                                   
REMARK 500    GLN A  96       -3.50   -153.22                                   
REMARK 500    ARG A  97       54.15     27.43                                   
REMARK 500    GLU B  91      -61.29    -26.52                                   
REMARK 500    ASN B  95       27.43    -65.44                                   
REMARK 500    GLN B  96       -3.17   -150.22                                   
REMARK 500    ARG B  97       46.31     35.52                                   
REMARK 500    LEU B 128      -20.81     35.57                                   
REMARK 500    ASN C  82       53.75     39.72                                   
REMARK 500    GLN C  96       -2.42   -159.45                                   
REMARK 500    ARG C  97       56.11     16.47                                   
REMARK 500    LEU C 128      -92.26     45.13                                   
REMARK 500    PRO D  86      150.87    -48.72                                   
REMARK 500    GLU D  91      -71.85    -36.33                                   
REMARK 500    ASN D  95       47.71    -76.52                                   
REMARK 500    GLN D  96       -6.12   -142.92                                   
REMARK 500    ARG D  97       39.86     37.18                                   
REMARK 500    SER D 127     -107.18    -75.04                                   
REMARK 500    LEU D 128      -34.09    113.90                                   
REMARK 500    ASN E  82       55.84     37.72                                   
REMARK 500    ASN E  95       48.22    -66.13                                   
REMARK 500    GLN E  96      -17.63   -144.87                                   
REMARK 500    ARG E  97       54.34     35.00                                   
REMARK 500    SER E 127      -72.37    -93.10                                   
REMARK 500    LEU E 128      121.44     45.19                                   
REMARK 500    ASN F  95       43.26    -60.85                                   
REMARK 500    GLN F  96      -13.26   -140.11                                   
REMARK 500    ARG F  97       47.98     33.29                                   
REMARK 500    LEU F 128       36.20   -173.70                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 1ZAE   RELATED DB: PDB                                   
REMARK 900 SOLUTION STRUCTURE OF THE FUNCTIONAL DOMAIN OF PHI29 REPLICATION     
REMARK 900 ORGANIZER P16.7C                                                     
REMARK 900 RELATED ID: 2BNK   RELATED DB: PDB                                   
REMARK 900 THE STRUCTURE OF PHAGE PHI29 REPLICATION ORGANIZER PROTEIN P16.7     
DBREF  2C5R A   63   129  UNP    P16517   VG167_BPPH2     64    130             
DBREF  2C5R B   63   129  UNP    P16517   VG167_BPPH2     64    130             
DBREF  2C5R C   63   129  UNP    P16517   VG167_BPPH2     64    130             
DBREF  2C5R D   63   129  UNP    P16517   VG167_BPPH2     64    130             
DBREF  2C5R E   63   129  UNP    P16517   VG167_BPPH2     64    130             
DBREF  2C5R F   63   129  UNP    P16517   VG167_BPPH2     64    130             
DBREF  2C5R Y    9    16  PDB    2C5R     2C5R             9     16             
DBREF  2C5R Z    1     8  PDB    2C5R     2C5R             1      8             
SEQRES   1 A   67  LYS THR VAL ASN LEU SER ALA CYS GLU VAL ALA VAL LEU          
SEQRES   2 A   67  ASP LEU TYR GLU GLN SER ASN ILE ARG ILE PRO SER ASP          
SEQRES   3 A   67  ILE ILE GLU ASP LEU VAL ASN GLN ARG LEU GLN SER GLU          
SEQRES   4 A   67  GLN GLU VAL LEU ASN TYR ILE GLU THR GLN ARG THR TYR          
SEQRES   5 A   67  TRP LYS LEU GLU ASN GLN LYS LYS LEU TYR ARG GLY SER          
SEQRES   6 A   67  LEU LYS                                                      
SEQRES   1 B   67  LYS THR VAL ASN LEU SER ALA CYS GLU VAL ALA VAL LEU          
SEQRES   2 B   67  ASP LEU TYR GLU GLN SER ASN ILE ARG ILE PRO SER ASP          
SEQRES   3 B   67  ILE ILE GLU ASP LEU VAL ASN GLN ARG LEU GLN SER GLU          
SEQRES   4 B   67  GLN GLU VAL LEU ASN TYR ILE GLU THR GLN ARG THR TYR          
SEQRES   5 B   67  TRP LYS LEU GLU ASN GLN LYS LYS LEU TYR ARG GLY SER          
SEQRES   6 B   67  LEU LYS                                                      
SEQRES   1 C   67  LYS THR VAL ASN LEU SER ALA CYS GLU VAL ALA VAL LEU          
SEQRES   2 C   67  ASP LEU TYR GLU GLN SER ASN ILE ARG ILE PRO SER ASP          
SEQRES   3 C   67  ILE ILE GLU ASP LEU VAL ASN GLN ARG LEU GLN SER GLU          
SEQRES   4 C   67  GLN GLU VAL LEU ASN TYR ILE GLU THR GLN ARG THR TYR          
SEQRES   5 C   67  TRP LYS LEU GLU ASN GLN LYS LYS LEU TYR ARG GLY SER          
SEQRES   6 C   67  LEU LYS                                                      
SEQRES   1 D   67  LYS THR VAL ASN LEU SER ALA CYS GLU VAL ALA VAL LEU          
SEQRES   2 D   67  ASP LEU TYR GLU GLN SER ASN ILE ARG ILE PRO SER ASP          
SEQRES   3 D   67  ILE ILE GLU ASP LEU VAL ASN GLN ARG LEU GLN SER GLU          
SEQRES   4 D   67  GLN GLU VAL LEU ASN TYR ILE GLU THR GLN ARG THR TYR          
SEQRES   5 D   67  TRP LYS LEU GLU ASN GLN LYS LYS LEU TYR ARG GLY SER          
SEQRES   6 D   67  LEU LYS                                                      
SEQRES   1 E   67  LYS THR VAL ASN LEU SER ALA CYS GLU VAL ALA VAL LEU          
SEQRES   2 E   67  ASP LEU TYR GLU GLN SER ASN ILE ARG ILE PRO SER ASP          
SEQRES   3 E   67  ILE ILE GLU ASP LEU VAL ASN GLN ARG LEU GLN SER GLU          
SEQRES   4 E   67  GLN GLU VAL LEU ASN TYR ILE GLU THR GLN ARG THR TYR          
SEQRES   5 E   67  TRP LYS LEU GLU ASN GLN LYS LYS LEU TYR ARG GLY SER          
SEQRES   6 E   67  LEU LYS                                                      
SEQRES   1 F   67  LYS THR VAL ASN LEU SER ALA CYS GLU VAL ALA VAL LEU          
SEQRES   2 F   67  ASP LEU TYR GLU GLN SER ASN ILE ARG ILE PRO SER ASP          
SEQRES   3 F   67  ILE ILE GLU ASP LEU VAL ASN GLN ARG LEU GLN SER GLU          
SEQRES   4 F   67  GLN GLU VAL LEU ASN TYR ILE GLU THR GLN ARG THR TYR          
SEQRES   5 F   67  TRP LYS LEU GLU ASN GLN LYS LYS LEU TYR ARG GLY SER          
SEQRES   6 F   67  LEU LYS                                                      
SEQRES   1 Y    8   DT  DC  DC  DA  DC  DC  DG  DG                              
SEQRES   1 Z    8   DC  DC  DG  DG  DT  DG  DG  DA                              
FORMUL   9  HOH   *51(H2 O)                                                     
HELIX    1   1 SER A   68  SER A   81  1                                  14    
HELIX    2   2 PRO A   86  ASN A   95  1                                  10    
HELIX    3   3 SER A  100  ASN A  119  1                                  20    
HELIX    4   4 SER B   68  SER B   81  1                                  14    
HELIX    5   5 PRO B   86  ASN B   95  1                                  10    
HELIX    6   6 SER B  100  LYS B  121  1                                  22    
HELIX    7   7 SER C   68  SER C   81  1                                  14    
HELIX    8   8 PRO C   86  ASN C   95  1                                  10    
HELIX    9   9 SER C  100  LYS C  121  1                                  22    
HELIX   10  10 SER D   68  SER D   81  1                                  14    
HELIX   11  11 PRO D   86  ASN D   95  1                                  10    
HELIX   12  12 SER D  100  ASN D  119  1                                  20    
HELIX   13  13 SER E   68  SER E   81  1                                  14    
HELIX   14  14 PRO E   86  ASN E   95  1                                  10    
HELIX   15  15 SER E  100  LYS E  121  1                                  22    
HELIX   16  16 SER F   68  SER F   81  1                                  14    
HELIX   17  17 PRO F   86  ASN F   95  1                                  10    
HELIX   18  18 SER F  100  LYS F  121  1                                  22    
CRYST1   65.505   72.111  127.360  90.00  90.00  90.00 P 21 21 21   24          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.015266  0.000000  0.000000        0.00000                         
SCALE2      0.000000  0.013868  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.007852        0.00000                         
MTRIX1   1 -0.998550 -0.022810  0.048820       39.73845    1                    
MTRIX2   1 -0.028070 -0.553300 -0.832510       27.39048    1                    
MTRIX3   1  0.046010 -0.832670  0.551860       13.62338    1                    
MTRIX1   2 -0.998260 -0.026380 -0.052820       34.55003    1                    
MTRIX2   2  0.023690 -0.998420  0.050920       32.33890    1                    
MTRIX3   2 -0.054080  0.049580  0.997300       -0.19360    1                    
MTRIX1   3  0.993490  0.081240 -0.079820       -6.12134    1                    
MTRIX2   3  0.033380  0.462400  0.886040        6.05816    1                    
MTRIX3   3  0.108890 -0.882940  0.456680       13.32267    1                    
MTRIX1   4 -0.985940 -0.132660  0.101630       45.94772    1                    
MTRIX2   4 -0.158310  0.546680 -0.822240       12.68644    1                    
MTRIX3   4  0.053520 -0.826770 -0.559990       16.75061    1                    
MTRIX1   5  0.995660  0.047720  0.079880        4.79002    1                    
MTRIX2   5  0.050320  0.445920 -0.893660       10.35376    1                    
MTRIX3   5 -0.078270  0.893800  0.441580      -11.41956    1