PDB Short entry for 2C7S HEADER HYDROLASE 28-NOV-05 2C7S TITLE CRYSTAL STRUCTURE OF HUMAN PROTEIN TYROSINE PHOSPHATASE KAPPA AT 1.95A TITLE 2 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE KAPPA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 865-1154; COMPND 5 SYNONYM: HUMAN PROTEIN TYROSINE PHOSPHATASE KAPPA, PROTEIN-TYROSINE COMPND 6 PHOSPHATASE KAPPA, R-PTP-KAPPA; COMPND 7 EC: 3.1.3.48; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS RECEPTOR TYPE TYROSINE PHOSPHATASE KAPPA, PTPRK, GLYCOPROTEIN, KEYWDS 2 HYDROLASE, IMMUNOGLOBULIN DOMAIN, PROTEIN PHOSPHATASE, RECEPTOR, KEYWDS 3 TRANSMEMBRANE EXPDTA X-RAY DIFFRACTION AUTHOR J.E.DEBRECZENI,E.UGOCHUKWU,J.ESWARAN,A.BARR,S.DAS,N.BURGESS, AUTHOR 2 O.GILEADI,E.LONGMAN,F.VON DELFT,S.KNAPP,M.SUNDSTRON,C.ARROWSMITH, AUTHOR 3 J.WEIGELT,A.EDWARDS REVDAT 7 13-DEC-23 2C7S 1 REMARK REVDAT 6 08-MAY-19 2C7S 1 REMARK REVDAT 5 28-FEB-18 2C7S 1 TITLE SOURCE JRNL REVDAT 4 24-JAN-18 2C7S 1 AUTHOR REVDAT 3 13-JUL-11 2C7S 1 VERSN REVDAT 2 24-FEB-09 2C7S 1 VERSN REVDAT 1 02-JAN-07 2C7S 0 JRNL AUTH J.ESWARAN,J.E.DEBRECZENI,E.LONGMAN,A.J.BARR,S.KNAPP JRNL TITL THE CRYSTAL STRUCTURE OF HUMAN RECEPTOR PROTEIN TYROSINE JRNL TITL 2 PHOSPHATASE KAPPA PHOSPHATASE DOMAIN 1. JRNL REF PROTEIN SCI. V. 15 1500 2006 JRNL REFN ISSN 0961-8368 JRNL PMID 16672235 JRNL DOI 10.1110/PS.062128706 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 69.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 31191 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1635 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1982 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2760 REMARK 3 BIN FREE R VALUE SET COUNT : 85 REMARK 3 BIN FREE R VALUE : 0.3290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2299 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 138 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.59000 REMARK 3 B22 (A**2) : 0.59000 REMARK 3 B33 (A**2) : -1.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.136 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.123 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.095 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.609 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2371 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1588 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3222 ; 1.202 ; 1.938 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3849 ; 0.864 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 291 ; 6.255 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 113 ;33.479 ;23.628 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 384 ;13.931 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;16.465 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 347 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2660 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 502 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 439 ; 0.189 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1619 ; 0.192 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1135 ; 0.179 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1211 ; 0.082 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 120 ; 0.142 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 11 ; 0.170 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 27 ; 0.290 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.150 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1517 ; 0.624 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2343 ; 0.997 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1025 ; 1.397 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 877 ; 2.042 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 865 A 1155 REMARK 3 ORIGIN FOR THE GROUP (A): 35.4260 21.2930 34.9410 REMARK 3 T TENSOR REMARK 3 T11: -0.1057 T22: -0.1199 REMARK 3 T33: -0.2326 T12: -0.0105 REMARK 3 T13: 0.0013 T23: 0.0175 REMARK 3 L TENSOR REMARK 3 L11: 2.0365 L22: 2.5095 REMARK 3 L33: 4.1060 L12: -1.1337 REMARK 3 L13: -1.4595 L23: 2.1641 REMARK 3 S TENSOR REMARK 3 S11: 0.1985 S12: 0.0793 S13: 0.0318 REMARK 3 S21: -0.2263 S22: -0.0454 S23: -0.0419 REMARK 3 S31: -0.1569 S32: 0.0409 S33: -0.1531 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2C7S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-NOV-05. REMARK 100 THE DEPOSITION ID IS D_1290026580. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978978 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32866 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 52.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.1400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.29000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1RPM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SITTING DROP, 0.2M NANO3, 20% PEG3350, REMARK 280 10% ETHYLENE GLYCOL, VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.20750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 45.68650 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 45.68650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 81.31125 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 45.68650 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 45.68650 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 27.10375 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 45.68650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.68650 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 81.31125 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 45.68650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.68650 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 27.10375 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 54.20750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 REGULATES PROCESSES INVOLVING CELL CONTACT AND ADHESION REMARK 400 SUCH AS GROWTH CONTROL, TUMOR INVASION, AND METASTASIS REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 843 REMARK 465 HIS A 844 REMARK 465 HIS A 845 REMARK 465 HIS A 846 REMARK 465 HIS A 847 REMARK 465 HIS A 848 REMARK 465 HIS A 849 REMARK 465 SER A 850 REMARK 465 SER A 851 REMARK 465 GLY A 852 REMARK 465 VAL A 853 REMARK 465 ASP A 854 REMARK 465 LEU A 855 REMARK 465 GLY A 856 REMARK 465 THR A 857 REMARK 465 GLU A 858 REMARK 465 ASN A 859 REMARK 465 LEU A 860 REMARK 465 TYR A 861 REMARK 465 PHE A 862 REMARK 465 GLN A 863 REMARK 465 SER A 864 REMARK 465 GLU A 934 REMARK 465 ASP A 935 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 884 CG OD1 OD2 REMARK 470 SER A 885 OG REMARK 470 LYS A 889 CE NZ REMARK 470 GLU A 897 OE1 OE2 REMARK 470 ARG A 912 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 931 CG CD OE1 NE2 REMARK 470 VAL A 933 CG1 CG2 REMARK 470 ARG A 952 NH1 NH2 REMARK 470 VAL A 991 CG1 CG2 REMARK 470 TYR A1056 CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A1104 CD OE1 OE2 REMARK 470 ARG A1105 CZ NH1 NH2 REMARK 470 THR A1148 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 991 -126.00 63.61 REMARK 500 ASP A1003 -86.69 -120.26 REMARK 500 CYS A1083 -118.97 -123.06 REMARK 500 SER A1084 -67.30 -97.90 REMARK 500 VAL A1126 86.78 68.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A2156 REMARK 999 REMARK 999 SEQUENCE REMARK 999 M865 CLONING ARTIFACT, PART OF HIS-TAG DBREF 2C7S A 843 865 PDB 2C7S 2C7S 843 865 DBREF 2C7S A 866 1155 UNP Q15262 PTPRK_HUMAN 865 1154 SEQRES 1 A 313 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 313 GLY THR GLU ASN LEU TYR PHE GLN SER MET PRO ALA ILE SEQRES 3 A 313 ARG VAL ALA ASP LEU LEU GLN HIS ILE ASN LEU MET LYS SEQRES 4 A 313 THR SER ASP SER TYR GLY PHE LYS GLU GLU TYR GLU SER SEQRES 5 A 313 PHE PHE GLU GLY GLN SER ALA SER TRP ASP VAL ALA LYS SEQRES 6 A 313 LYS ASP GLN ASN ARG ALA LYS ASN ARG TYR GLY ASN ILE SEQRES 7 A 313 ILE ALA TYR ASP HIS SER ARG VAL ILE LEU GLN PRO VAL SEQRES 8 A 313 GLU ASP ASP PRO SER SER ASP TYR ILE ASN ALA ASN TYR SEQRES 9 A 313 ILE ASP GLY TYR GLN ARG PRO SER HIS TYR ILE ALA THR SEQRES 10 A 313 GLN GLY PRO VAL HIS GLU THR VAL TYR ASP PHE TRP ARG SEQRES 11 A 313 MET ILE TRP GLN GLU GLN SER ALA CYS ILE VAL MET VAL SEQRES 12 A 313 THR ASN LEU VAL GLU VAL GLY ARG VAL LYS CYS TYR LYS SEQRES 13 A 313 TYR TRP PRO ASP ASP THR GLU VAL TYR GLY ASP PHE LYS SEQRES 14 A 313 VAL THR CYS VAL GLU MET GLU PRO LEU ALA GLU TYR VAL SEQRES 15 A 313 VAL ARG THR PHE THR LEU GLU ARG ARG GLY TYR ASN GLU SEQRES 16 A 313 ILE ARG GLU VAL LYS GLN PHE HIS PHE THR GLY TRP PRO SEQRES 17 A 313 ASP HIS GLY VAL PRO TYR HIS ALA THR GLY LEU LEU SER SEQRES 18 A 313 PHE ILE ARG ARG VAL LYS LEU SER ASN PRO PRO SER ALA SEQRES 19 A 313 GLY PRO ILE VAL VAL HIS CYS SER ALA GLY ALA GLY ARG SEQRES 20 A 313 THR GLY CYS TYR ILE VAL ILE ASP ILE MET LEU ASP MET SEQRES 21 A 313 ALA GLU ARG GLU GLY VAL VAL ASP ILE TYR ASN CYS VAL SEQRES 22 A 313 LYS ALA LEU ARG SER ARG ARG ILE ASN MET VAL GLN THR SEQRES 23 A 313 GLU GLU GLN TYR ILE PHE ILE HIS ASP ALA ILE LEU GLU SEQRES 24 A 313 ALA CYS LEU CYS GLY GLU THR ALA ILE PRO VAL CYS GLU SEQRES 25 A 313 PHE HET ACT A2156 4 HETNAM ACT ACETATE ION FORMUL 2 ACT C2 H3 O2 1- FORMUL 3 HOH *138(H2 O) HELIX 1 1 ASP A 872 LYS A 881 1 10 HELIX 2 2 GLY A 887 SER A 894 1 8 HELIX 3 3 TRP A 903 LYS A 908 1 6 HELIX 4 4 ASP A 909 ASN A 915 5 7 HELIX 5 5 TYR A 923 SER A 926 5 4 HELIX 6 6 ASP A 936 TYR A 941 5 6 HELIX 7 7 VAL A 963 GLU A 965 5 3 HELIX 8 8 THR A 966 GLN A 978 1 13 HELIX 9 9 ALA A 1058 ASN A 1072 1 15 HELIX 10 10 ALA A 1087 GLY A 1107 1 21 HELIX 11 11 ASP A 1110 ARG A 1122 1 13 HELIX 12 12 THR A 1128 GLY A 1146 1 19 SHEET 1 AA 2 ILE A 868 ARG A 869 0 SHEET 2 AA 2 VAL A1108 VAL A1109 -1 O VAL A1109 N ILE A 868 SHEET 1 AB 8 ALA A 944 GLY A 949 0 SHEET 2 AB 8 ARG A 952 THR A 959 -1 O ARG A 952 N GLY A 949 SHEET 3 AB 8 ILE A1079 HIS A1082 1 O ILE A1079 N ILE A 957 SHEET 4 AB 8 CYS A 981 MET A 984 1 O CYS A 981 N VAL A1080 SHEET 5 AB 8 ARG A1039 PHE A1046 1 O LYS A1042 N ILE A 982 SHEET 6 AB 8 TYR A1023 ARG A1032 -1 O VAL A1024 N HIS A1045 SHEET 7 AB 8 PHE A1010 PRO A1019 -1 O LYS A1011 N GLU A1031 SHEET 8 AB 8 THR A1004 TYR A1007 -1 O GLU A1005 N VAL A1012 SHEET 1 AC 2 VAL A 989 GLU A 990 0 SHEET 2 AC 2 ARG A 993 VAL A 994 -1 O ARG A 993 N GLU A 990 SSBOND 1 CYS A 1145 CYS A 1153 1555 1555 2.04 SITE 1 AC1 9 CYS A1083 SER A1084 ALA A1085 GLY A1086 SITE 2 AC1 9 ALA A1087 GLY A1088 ARG A1089 GLN A1127 SITE 3 AC1 9 HOH A2121 CRYST1 91.373 91.373 108.415 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010944 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010944 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009224 0.00000