PDB Short entry for 2C98 HEADER TRANSCRIPTION REGULATION 09-DEC-05 2C98 TITLE STRUCTURAL BASIS OF THE NUCLEOTIDE DRIVEN CONFORMATIONAL CHANGES IN TITLE 2 THE AAA DOMAIN OF TRANSCRIPTION ACTIVATOR PSPF COMPND MOL_ID: 1; COMPND 2 MOLECULE: PSP OPERON TRANSCRIPTIONAL ACTIVATOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: AAA DOMAIN, RESIDUES 1-265; COMPND 5 SYNONYM: PSPF, PHAGE SHOCK PROTEIN F; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: ADP SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B834; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET28B KEYWDS BACTERIAL SIGMA54 ACTIVATOR, ATPASE, ATP-BINDING, DNA-BINDING, KEYWDS 2 SENSORY TRANSDUCTION, TRANSCRIPTION REGULATION, TWO-COMPONENT KEYWDS 3 REGULATORY SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR M.RAPPAS,J.SCHUMACHER,H.NIWA,M.BUCK,X.ZHANG REVDAT 6 13-DEC-23 2C98 1 REMARK REVDAT 5 27-MAR-13 2C98 1 REMARK REVDAT 4 13-JUL-11 2C98 1 VERSN REVDAT 3 24-FEB-09 2C98 1 VERSN REVDAT 2 08-MAR-06 2C98 1 JRNL REVDAT 1 01-FEB-06 2C98 0 JRNL AUTH M.RAPPAS,J.SCHUMACHER,H.NIWA,M.BUCK,X.ZHANG JRNL TITL STRUCTURAL BASIS OF THE NUCLEOTIDE DRIVEN CONFORMATIONAL JRNL TITL 2 CHANGES IN THE AAA(+) DOMAIN OF TRANSCRIPTION ACTIVATOR JRNL TITL 3 PSPF. JRNL REF J.MOL.BIOL. V. 357 481 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16430918 JRNL DOI 10.1016/J.JMB.2005.12.052 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 100.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 21639 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1121 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1544 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1550 REMARK 3 BIN FREE R VALUE SET COUNT : 69 REMARK 3 BIN FREE R VALUE : 0.1940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1939 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 197 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.22000 REMARK 3 B22 (A**2) : -0.22000 REMARK 3 B33 (A**2) : 0.33000 REMARK 3 B12 (A**2) : -0.11000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.128 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.124 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.078 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.565 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2006 ; 0.019 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1862 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2722 ; 1.747 ; 1.996 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4311 ; 0.917 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 242 ; 5.042 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 303 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2209 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 407 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 407 ; 0.216 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2135 ; 0.252 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1210 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 121 ; 0.155 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 17 ; 0.128 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 82 ; 0.307 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.140 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1217 ; 1.246 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1956 ; 2.336 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 789 ; 3.763 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 766 ; 6.308 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 8 A 179 REMARK 3 ORIGIN FOR THE GROUP (A): 23.0994 -19.3071 -4.8782 REMARK 3 T TENSOR REMARK 3 T11: 0.0201 T22: 0.0188 REMARK 3 T33: 0.0104 T12: -0.0026 REMARK 3 T13: 0.0052 T23: 0.0123 REMARK 3 L TENSOR REMARK 3 L11: 0.5583 L22: 0.3108 REMARK 3 L33: 0.3230 L12: -0.0686 REMARK 3 L13: 0.0125 L23: 0.0831 REMARK 3 S TENSOR REMARK 3 S11: 0.0170 S12: 0.0536 S13: -0.0029 REMARK 3 S21: -0.0023 S22: -0.0272 S23: -0.0245 REMARK 3 S31: 0.0073 S32: -0.0378 S33: 0.0102 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 180 A 257 REMARK 3 ORIGIN FOR THE GROUP (A): 46.8771 2.1447 1.3305 REMARK 3 T TENSOR REMARK 3 T11: 0.0048 T22: 0.0210 REMARK 3 T33: 0.0324 T12: 0.0028 REMARK 3 T13: -0.0013 T23: -0.0032 REMARK 3 L TENSOR REMARK 3 L11: 0.8429 L22: 0.1702 REMARK 3 L33: 0.4077 L12: -0.0096 REMARK 3 L13: 0.1614 L23: -0.1513 REMARK 3 S TENSOR REMARK 3 S11: 0.0067 S12: -0.0266 S13: -0.0114 REMARK 3 S21: -0.0098 S22: -0.0120 S23: -0.0249 REMARK 3 S31: -0.0006 S32: -0.0201 S33: 0.0053 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 400 A 400 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0000 0.0000 0.0000 REMARK 3 T TENSOR REMARK 3 T11: 0.0298 T22: 0.0298 REMARK 3 T33: 0.0298 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: 0.0000 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. DISORDERED REGION HAVE NOT BEEN MODELLED AND REMARK 3 DISORDERED RESIDUES HAVE BEEN MODELLED AS ALANINES REMARK 4 REMARK 4 2C98 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-DEC-05. REMARK 100 THE DEPOSITION ID IS D_1290026768. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-NOV-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9330 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22773 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 0.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2BJW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M AMMONIUM FORMATE, 0.1 M HEPES PH REMARK 280 8.0, 5% MPD, PH 8.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 26.26667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 13.13333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 19.70000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 6.56667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 32.83333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 TRANSCRIPTIONAL ACTIVATOR FOR THE PHAGE SHOCK PROTEIN REMARK 400 (PSP) OPERON (PSPABCE) REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLU A 3 REMARK 465 TYR A 4 REMARK 465 LYS A 5 REMARK 465 ASP A 6 REMARK 465 ASN A 7 REMARK 465 GLY A 83 REMARK 465 ALA A 84 REMARK 465 PHE A 85 REMARK 465 THR A 86 REMARK 465 GLY A 87 REMARK 465 ALA A 88 REMARK 465 PRO A 259 REMARK 465 PRO A 260 REMARK 465 GLU A 261 REMARK 465 ASP A 262 REMARK 465 ALA A 263 REMARK 465 ILE A 264 REMARK 465 ALA A 265 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 89 CG CD OE1 NE2 REMARK 470 LYS A 90 CG CD CE NZ REMARK 470 ARG A 257 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 258 CA C O CB CG CD NE REMARK 470 ARG A 258 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 38 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ASP A 74 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG A 182 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 182 40.17 -108.47 REMARK 500 GLU A 183 -120.50 55.50 REMARK 500 ASN A 225 -131.15 47.61 REMARK 500 ARG A 257 -29.29 -155.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2027 DISTANCE = 6.25 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 400 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2BJV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PSPF(1-275) R168A MUTANT REMARK 900 RELATED ID: 2BJW RELATED DB: PDB REMARK 900 PSPF AAA DOMAIN REMARK 900 RELATED ID: 2C96 RELATED DB: PDB REMARK 900 STRUCTURAL BASIS OF THE NUCLEOTIDE DRIVEN CONFORMATIONAL CHANGES IN REMARK 900 THE AAA DOMAIN OF TRANSCRIPTION ACTIVATOR PSPF REMARK 900 RELATED ID: 2C99 RELATED DB: PDB REMARK 900 STRUCTURAL BASIS OF THE NUCLEOTIDE DRIVEN CONFORMATIONAL CHANGES IN REMARK 900 THE AAA DOMAIN OF TRANSCRIPTION ACTIVATOR PSPF REMARK 900 RELATED ID: 2C9C RELATED DB: PDB REMARK 900 STRUCTURAL BASIS OF THE NUCLEOTIDE DRIVEN CONFORMATIONAL CHANGES IN REMARK 900 THE AAA DOMAIN OF TRANSCRIPTION ACTIVATOR PSPF REMARK 999 REMARK 999 SEQUENCE REMARK 999 DISORDERED RESIDUES HAVE BEEN MODELLED AS ALANINES DBREF 2C98 A 1 265 UNP P37344 PSPF_ECOLI 1 265 SEQRES 1 A 265 MET ALA GLU TYR LYS ASP ASN LEU LEU GLY GLU ALA ASN SEQRES 2 A 265 SER PHE LEU GLU VAL LEU GLU GLN VAL SER HIS LEU ALA SEQRES 3 A 265 PRO LEU ASP LYS PRO VAL LEU ILE ILE GLY GLU ARG GLY SEQRES 4 A 265 THR GLY LYS GLU LEU ILE ALA SER ARG LEU HIS TYR LEU SEQRES 5 A 265 SER SER ARG TRP GLN GLY PRO PHE ILE SER LEU ASN CYS SEQRES 6 A 265 ALA ALA LEU ASN GLU ASN LEU LEU ASP SER GLU LEU PHE SEQRES 7 A 265 GLY HIS GLU ALA GLY ALA PHE THR GLY ALA GLN LYS ARG SEQRES 8 A 265 HIS PRO GLY ARG PHE GLU ARG ALA ASP GLY GLY THR LEU SEQRES 9 A 265 PHE LEU ASP GLU LEU ALA THR ALA PRO MET MET VAL GLN SEQRES 10 A 265 GLU LYS LEU LEU ARG VAL ILE GLU TYR GLY GLU LEU GLU SEQRES 11 A 265 ARG VAL GLY GLY SER GLN PRO LEU GLN VAL ASN VAL ARG SEQRES 12 A 265 LEU VAL CYS ALA THR ASN ALA ASP LEU PRO ALA MET VAL SEQRES 13 A 265 ASN GLU GLY THR PHE ARG ALA ASP LEU LEU ASP ARG LEU SEQRES 14 A 265 ALA PHE ASP VAL VAL GLN LEU PRO PRO LEU ARG GLU ARG SEQRES 15 A 265 GLU SER ASP ILE MET LEU MET ALA GLU TYR PHE ALA ILE SEQRES 16 A 265 GLN MET CYS ARG GLU ILE LYS LEU PRO LEU PHE PRO GLY SEQRES 17 A 265 PHE THR GLU ARG ALA ARG GLU THR LEU LEU ASN TYR ARG SEQRES 18 A 265 TRP PRO GLY ASN ILE ARG GLU LEU LYS ASN VAL VAL GLU SEQRES 19 A 265 ARG SER VAL TYR ARG HIS GLY THR SER ASP TYR PRO LEU SEQRES 20 A 265 ASP ASP ILE ILE ILE ASP PRO PHE LYS ARG ARG PRO PRO SEQRES 21 A 265 GLU ASP ALA ILE ALA HET ADP A 400 27 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 HOH *197(H2 O) HELIX 1 1 ALA A 12 ALA A 26 1 15 HELIX 2 2 GLY A 41 LEU A 52 1 12 HELIX 3 3 ALA A 66 LEU A 68 5 3 HELIX 4 4 ASN A 69 GLY A 79 1 11 HELIX 5 5 GLY A 94 ALA A 99 1 6 HELIX 6 6 GLU A 108 ALA A 112 5 5 HELIX 7 7 PRO A 113 GLY A 127 1 15 HELIX 8 8 ASP A 151 GLU A 158 1 8 HELIX 9 9 ARG A 162 ALA A 170 1 9 HELIX 10 10 PRO A 178 ARG A 182 5 5 HELIX 11 11 SER A 184 ILE A 201 1 18 HELIX 12 12 THR A 210 TYR A 220 1 11 HELIX 13 13 GLY A 224 GLY A 241 1 18 SHEET 1 AA 5 PHE A 60 ASN A 64 0 SHEET 2 AA 5 THR A 103 ASP A 107 1 O THR A 103 N ILE A 61 SHEET 3 AA 5 ARG A 143 THR A 148 1 O ARG A 143 N LEU A 104 SHEET 4 AA 5 VAL A 32 ILE A 35 1 O VAL A 32 N CYS A 146 SHEET 5 AA 5 ASP A 172 GLN A 175 1 O ASP A 172 N LEU A 33 SHEET 1 AB 2 HIS A 80 GLU A 81 0 SHEET 2 AB 2 ARG A 91 HIS A 92 -1 O HIS A 92 N HIS A 80 SHEET 1 AC 2 GLU A 128 LEU A 129 0 SHEET 2 AC 2 LEU A 138 GLN A 139 -1 O LEU A 138 N LEU A 129 SITE 1 AC1 17 LEU A 9 PHE A 15 GLY A 39 THR A 40 SITE 2 AC1 17 GLY A 41 LYS A 42 GLU A 43 LEU A 44 SITE 3 AC1 17 ILE A 226 ARG A 227 HOH A2110 HOH A2190 SITE 4 AC1 17 HOH A2191 HOH A2192 HOH A2193 HOH A2195 SITE 5 AC1 17 HOH A2196 CRYST1 113.097 113.097 39.400 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008842 0.005105 0.000000 0.00000 SCALE2 0.000000 0.010210 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025381 0.00000