PDB Short entry for 2CDZ HEADER TRANSFERASE 31-JAN-06 2CDZ TITLE CRYSTAL STRUCTURE OF THE HUMAN P21-ACTIVATED KINASE 4 IN COMPLEX WITH TITLE 2 CGP74514A COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE PAK 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KINASE DOMAIN, RESIDUES 291-591; COMPND 5 SYNONYM: HUMAN P21-ACTIVATED KINASE 4; COMPND 6 EC: 2.7.1.37; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PGEX-6P2; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX6B-C001 KEYWDS TRANSFERASE, PROTEIN KINASE, STE20, PAK4, ATP-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR J.E.DEBRECZENI,E.UGOCHUKWU,J.ESWARAN,P.FILIPPAKOPOULOS,S.DAS, AUTHOR 2 O.FEDOROV,M.SUNDSTROM,C.ARROWSMITH,J.WEIGELT,A.EDWARDS,F.VON DELFT, AUTHOR 3 S.KNAPP REVDAT 8 13-DEC-23 2CDZ 1 LINK REVDAT 7 04-APR-18 2CDZ 1 REMARK REVDAT 6 24-JAN-18 2CDZ 1 AUTHOR REVDAT 5 13-JUL-11 2CDZ 1 VERSN REVDAT 4 24-FEB-09 2CDZ 1 VERSN REVDAT 3 29-JAN-08 2CDZ 1 JRNL REVDAT 2 10-APR-07 2CDZ 1 JRNL REVDAT 1 08-FEB-06 2CDZ 0 JRNL AUTH J.ESWARAN,W.H.LEE,J.E.DEBRECZENI,P.FILIPPAKOPOULOS, JRNL AUTH 2 A.TURNBULL,O.FEDOROV,S.W.DEACON,J.R.PETERSON,S.KNAPP JRNL TITL CRYSTAL STRUCTURES OF THE P21-ACTIVATED KINASES PAK4, PAK5, JRNL TITL 2 AND PAK6 REVEAL CATALYTIC DOMAIN PLASTICITY OF ACTIVE GROUP JRNL TITL 3 II PAKS. JRNL REF STRUCTURE V. 15 201 2007 JRNL REFN ISSN 0969-2126 JRNL PMID 17292838 JRNL DOI 10.1016/J.STR.2007.01.001 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 103.14 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 19821 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1060 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1413 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2340 REMARK 3 BIN FREE R VALUE SET COUNT : 105 REMARK 3 BIN FREE R VALUE : 0.3820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2246 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 117 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.56000 REMARK 3 B22 (A**2) : -1.56000 REMARK 3 B33 (A**2) : 3.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.229 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.203 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.141 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.088 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2356 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1604 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3210 ; 1.430 ; 2.000 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3894 ; 0.941 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 296 ; 5.499 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 98 ;32.360 ;23.367 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 401 ;16.226 ;15.037 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;17.733 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 368 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2580 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 453 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 484 ; 0.192 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1696 ; 0.197 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1135 ; 0.170 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1229 ; 0.089 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 94 ; 0.165 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 6 ; 0.191 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 21 ; 0.284 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.229 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1601 ; 1.713 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2370 ; 2.558 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 973 ; 4.483 ; 7.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 836 ; 6.170 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 299 A 398 REMARK 3 ORIGIN FOR THE GROUP (A): 56.5090 31.2670 26.7780 REMARK 3 T TENSOR REMARK 3 T11: -0.1742 T22: -0.0757 REMARK 3 T33: -0.0098 T12: -0.0110 REMARK 3 T13: -0.0113 T23: -0.0126 REMARK 3 L TENSOR REMARK 3 L11: 3.8255 L22: 1.3229 REMARK 3 L33: 3.6783 L12: 0.6878 REMARK 3 L13: 1.4303 L23: 0.2639 REMARK 3 S TENSOR REMARK 3 S11: -0.0438 S12: -0.1680 S13: 0.0994 REMARK 3 S21: -0.0265 S22: -0.0879 S23: 0.0626 REMARK 3 S31: -0.1562 S32: 0.0956 S33: 0.1317 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 399 A 590 REMARK 3 ORIGIN FOR THE GROUP (A): 42.2680 15.7810 13.8050 REMARK 3 T TENSOR REMARK 3 T11: -0.0814 T22: -0.1243 REMARK 3 T33: -0.0838 T12: 0.0146 REMARK 3 T13: -0.0355 T23: -0.0124 REMARK 3 L TENSOR REMARK 3 L11: 1.3654 L22: 4.1546 REMARK 3 L33: 1.6007 L12: -0.1723 REMARK 3 L13: 0.2851 L23: -0.6032 REMARK 3 S TENSOR REMARK 3 S11: 0.0032 S12: 0.1217 S13: -0.1093 REMARK 3 S21: -0.0231 S22: -0.0035 S23: -0.1061 REMARK 3 S31: 0.0575 S32: 0.0124 S33: 0.0004 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2CDZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-JAN-06. REMARK 100 THE DEPOSITION ID IS D_1290027512. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.542 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU IMAGE PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23590 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 6.760 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.67 REMARK 200 R MERGE FOR SHELL (I) : 0.41000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2BVA REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 21.19100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 72.90850 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 72.90850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 31.78650 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 72.90850 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 72.90850 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 10.59550 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 72.90850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 72.90850 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 31.78650 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 72.90850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 72.90850 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 10.59550 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 21.19100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 289 REMARK 465 SER A 290 REMARK 465 SER A 291 REMARK 465 PRO A 292 REMARK 465 GLN A 293 REMARK 465 ARG A 294 REMARK 465 GLU A 295 REMARK 465 PRO A 296 REMARK 465 GLN A 297 REMARK 465 ARG A 298 REMARK 465 SER A 342 REMARK 465 SER A 343 REMARK 465 ARG A 591 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 319 OG REMARK 470 TYR A 320 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 341 CD NE CZ NH1 NH2 REMARK 470 LYS A 345 CE NZ REMARK 470 GLN A 374 CG CD OE1 NE2 REMARK 470 ARG A 411 CD NE CZ NH1 NH2 REMARK 470 LYS A 467 CG CD CE NZ REMARK 470 GLU A 468 CG CD OE1 OE2 REMARK 470 LYS A 473 CG CD CE NZ REMARK 470 LYS A 522 CE NZ REMARK 470 LYS A 536 CG CD CE NZ REMARK 470 HIS A 539 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 540 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 439 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 439 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 555 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 589 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 589 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 458 61.36 60.56 REMARK 500 ARG A 489 37.64 71.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2069 DISTANCE = 6.54 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 23D A1591 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1592 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1593 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1594 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2BVA RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HUMAN P21-ACTIVATED KINASE 4 DBREF 2CDZ A 289 290 PDB 2CDZ 2CDZ 289 290 DBREF 2CDZ A 291 591 UNP O96013 PAK4_HUMAN 291 591 SEQRES 1 A 303 GLY SER SER PRO GLN ARG GLU PRO GLN ARG VAL SER HIS SEQRES 2 A 303 GLU GLN PHE ARG ALA ALA LEU GLN LEU VAL VAL ASP PRO SEQRES 3 A 303 GLY ASP PRO ARG SER TYR LEU ASP ASN PHE ILE LYS ILE SEQRES 4 A 303 GLY GLU GLY SER THR GLY ILE VAL CYS ILE ALA THR VAL SEQRES 5 A 303 ARG SER SER GLY LYS LEU VAL ALA VAL LYS LYS MET ASP SEQRES 6 A 303 LEU ARG LYS GLN GLN ARG ARG GLU LEU LEU PHE ASN GLU SEQRES 7 A 303 VAL VAL ILE MET ARG ASP TYR GLN HIS GLU ASN VAL VAL SEQRES 8 A 303 GLU MET TYR ASN SER TYR LEU VAL GLY ASP GLU LEU TRP SEQRES 9 A 303 VAL VAL MET GLU PHE LEU GLU GLY GLY ALA LEU THR ASP SEQRES 10 A 303 ILE VAL THR HIS THR ARG MET ASN GLU GLU GLN ILE ALA SEQRES 11 A 303 ALA VAL CYS LEU ALA VAL LEU GLN ALA LEU SER VAL LEU SEQRES 12 A 303 HIS ALA GLN GLY VAL ILE HIS ARG ASP ILE LYS SER ASP SEQRES 13 A 303 SER ILE LEU LEU THR HIS ASP GLY ARG VAL LYS LEU SER SEQRES 14 A 303 ASP PHE GLY PHE CYS ALA GLN VAL SER LYS GLU VAL PRO SEQRES 15 A 303 ARG ARG LYS SEP LEU VAL GLY THR PRO TYR TRP MET ALA SEQRES 16 A 303 PRO GLU LEU ILE SER ARG LEU PRO TYR GLY PRO GLU VAL SEQRES 17 A 303 ASP ILE TRP SER LEU GLY ILE MET VAL ILE GLU MET VAL SEQRES 18 A 303 ASP GLY GLU PRO PRO TYR PHE ASN GLU PRO PRO LEU LYS SEQRES 19 A 303 ALA MET LYS MET ILE ARG ASP ASN LEU PRO PRO ARG LEU SEQRES 20 A 303 LYS ASN LEU HIS LYS VAL SER PRO SER LEU LYS GLY PHE SEQRES 21 A 303 LEU ASP ARG LEU LEU VAL ARG ASP PRO ALA GLN ARG ALA SEQRES 22 A 303 THR ALA ALA GLU LEU LEU LYS HIS PRO PHE LEU ALA LYS SEQRES 23 A 303 ALA GLY PRO PRO ALA SER ILE VAL PRO LEU MET ARG GLN SEQRES 24 A 303 ASN ARG THR ARG MODRES 2CDZ SEP A 474 SER PHOSPHOSERINE HET SEP A 474 10 HET 23D A1591 27 HET SO4 A1592 5 HET SO4 A1593 5 HET CL A1594 1 HETNAM SEP PHOSPHOSERINE HETNAM 23D N2-[(1R,2S)-2-AMINOCYCLOHEXYL]-N6-(3-CHLOROPHENYL)-9- HETNAM 2 23D ETHYL-9H-PURINE-2,6-DIAMINE HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETSYN SEP PHOSPHONOSERINE FORMUL 1 SEP C3 H8 N O6 P FORMUL 2 23D C19 H24 CL N7 FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 CL CL 1- FORMUL 6 HOH *117(H2 O) HELIX 1 1 SER A 300 VAL A 312 1 13 HELIX 2 2 ARG A 360 TYR A 373 1 14 HELIX 3 3 ALA A 402 THR A 410 1 9 HELIX 4 4 ASN A 413 GLN A 434 1 22 HELIX 5 5 LYS A 442 ASP A 444 5 3 HELIX 6 6 THR A 478 MET A 482 5 5 HELIX 7 7 ALA A 483 SER A 488 1 6 HELIX 8 8 PRO A 494 GLY A 511 1 18 HELIX 9 9 PRO A 519 ASN A 530 1 12 HELIX 10 10 SER A 542 LEU A 553 1 12 HELIX 11 11 THR A 562 LEU A 567 1 6 HELIX 12 12 LYS A 568 ALA A 575 5 8 HELIX 13 13 PRO A 577 ILE A 581 5 5 HELIX 14 14 ILE A 581 MET A 585 5 5 HELIX 15 15 MET A 585 ARG A 589 5 5 SHEET 1 AA 5 LEU A 321 GLU A 329 0 SHEET 2 AA 5 ILE A 334 VAL A 340 -1 O VAL A 335 N ILE A 327 SHEET 3 AA 5 LEU A 346 ASP A 353 -1 O VAL A 347 N ALA A 338 SHEET 4 AA 5 GLU A 390 GLU A 396 -1 O LEU A 391 N MET A 352 SHEET 5 AA 5 MET A 381 VAL A 387 -1 N TYR A 382 O VAL A 394 SHEET 1 AB 2 VAL A 436 ILE A 437 0 SHEET 2 AB 2 ALA A 463 GLN A 464 -1 O ALA A 463 N ILE A 437 SHEET 1 AC 2 ILE A 446 LEU A 448 0 SHEET 2 AC 2 VAL A 454 LEU A 456 -1 O LYS A 455 N LEU A 447 LINK C LYS A 473 N SEP A 474 1555 1555 1.34 LINK C SEP A 474 N LEU A 475 1555 1555 1.33 SITE 1 AC1 13 ILE A 327 GLU A 329 VAL A 335 ALA A 348 SITE 2 AC1 13 VAL A 379 GLU A 396 PHE A 397 LEU A 398 SITE 3 AC1 13 GLU A 399 GLY A 401 LEU A 447 SER A 457 SITE 4 AC1 13 HOH A2054 SITE 1 AC2 4 ARG A 359 SEP A 474 LEU A 475 ARG A 489 SITE 1 AC3 2 LYS A 525 ARG A 528 SITE 1 AC4 1 ARG A 551 CRYST1 145.817 145.817 42.382 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006858 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006858 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023595 0.00000