PDB Short entry for 2CI9 HEADER PROTEIN BINDING 17-MAR-06 2CI9 TITLE NCK1 SH2-DOMAIN IN COMPLEX WITH A DODECAPHOSPHOPEPTIDE FROM EPEC TITLE 2 PROTEIN TIR COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOPLASMIC PROTEIN NCK1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: SH2-DOMAIN, RESIDUES 281-377; COMPND 5 SYNONYM: NCK ADAPTOR PROTEIN 1, SH2/SH3 ADAPTOR PROTEIN NCK-ALPHA; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: TRANSLOCATED INTIMIN RECEPTOR; COMPND 9 CHAIN: L, M; COMPND 10 FRAGMENT: PHOSPHOPEPTIDE LIGAND OF NCK-SH2, RESIDUES 469-480; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: THE PEPTIDE WAS SYNTHESIZED CHEMICALLY SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1 (AMERSHAM BIOSCIENCES); SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 12 ORGANISM_TAXID: 562 KEYWDS PROTEIN-BINDING, SH2-DOMAIN-COMPLEX, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR S.FRESE,W.-D.SCHUBERT,A.C.FINDEIS,T.MARQUARDT,Y.S.ROSKE, AUTHOR 2 T.E.B.STRADAL,D.W.HEINZ REVDAT 5 15-MAY-19 2CI9 1 REMARK LINK REVDAT 4 13-JUL-11 2CI9 1 VERSN REVDAT 3 24-FEB-09 2CI9 1 VERSN REVDAT 2 29-JUN-06 2CI9 1 COMPND JRNL REVDAT 1 24-APR-06 2CI9 0 JRNL AUTH S.FRESE,W.-D.SCHUBERT,A.C.FINDEIS,T.MARQUARDT,Y.S.ROSKE, JRNL AUTH 2 T.E.B.STRADAL,D.W.HEINZ JRNL TITL THE PHOSPHOTYROSINE PEPTIDE BINDING SPECIFICITY OF NCK1 AND JRNL TITL 2 NCK2 SRC HOMOLOGY 2 DOMAINS. JRNL REF J.BIOL.CHEM. V. 281 18236 2006 JRNL REFN ISSN 0021-9258 JRNL PMID 16636066 JRNL DOI 10.1074/JBC.M512917200 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.02 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 85.4 REMARK 3 NUMBER OF REFLECTIONS : 28813 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1532 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2419 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2390 REMARK 3 BIN FREE R VALUE SET COUNT : 119 REMARK 3 BIN FREE R VALUE : 0.2860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1825 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 255 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : UNVERIFIED REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.05000 REMARK 3 B22 (A**2) : -0.09000 REMARK 3 B33 (A**2) : 0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.105 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.105 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.059 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.033 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2038 ; 0.012 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1395 ; 0.007 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2775 ; 2.171 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3435 ; 1.572 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 261 ; 4.672 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 105 ;36.809 ;24.857 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 374 ;12.252 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;22.083 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 284 ; 0.111 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2323 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 411 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 322 ; 0.203 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1360 ; 0.160 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 911 ; 0.170 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1053 ; 0.076 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 188 ; 0.122 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 27 ; 0.130 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 61 ; 0.169 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 23 ; 0.137 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1244 ; 1.703 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1968 ; 2.473 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 892 ; 1.857 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 795 ; 2.548 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 275 A 377 REMARK 3 RESIDUE RANGE : L 472 L 480 REMARK 3 ORIGIN FOR THE GROUP (A): 32.6100 12.6690 8.7110 REMARK 3 T TENSOR REMARK 3 T11: -0.1770 T22: -0.0476 REMARK 3 T33: -0.1466 T12: 0.0048 REMARK 3 T13: 0.0068 T23: -0.0040 REMARK 3 L TENSOR REMARK 3 L11: 2.2818 L22: 1.5021 REMARK 3 L33: 1.1550 L12: 0.5679 REMARK 3 L13: 0.1155 L23: -0.2878 REMARK 3 S TENSOR REMARK 3 S11: 0.0022 S12: 0.0367 S13: -0.1397 REMARK 3 S21: 0.0002 S22: 0.0161 S23: -0.0524 REMARK 3 S31: 0.0813 S32: 0.0359 S33: -0.0184 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 278 B 377 REMARK 3 RESIDUE RANGE : M 470 M 481 REMARK 3 ORIGIN FOR THE GROUP (A): 47.0440 45.1800 9.5300 REMARK 3 T TENSOR REMARK 3 T11: -0.1016 T22: -0.0261 REMARK 3 T33: -0.1309 T12: -0.0186 REMARK 3 T13: 0.0414 T23: -0.0108 REMARK 3 L TENSOR REMARK 3 L11: 1.6626 L22: 1.9773 REMARK 3 L33: 3.7032 L12: 0.9560 REMARK 3 L13: -0.3799 L23: 0.1022 REMARK 3 S TENSOR REMARK 3 S11: 0.0531 S12: 0.1040 S13: 0.1057 REMARK 3 S21: -0.1336 S22: 0.1060 S23: -0.0448 REMARK 3 S31: -0.4909 S32: 0.2290 S33: -0.1591 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2CI9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-MAR-06. REMARK 100 THE DEPOSITION ID IS D_1290028210. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MPG/DESY, HAMBURG REMARK 200 BEAMLINE : BW6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0500 REMARK 200 MONOCHROMATOR : ROEMO TYPE DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : 2 AU-COATED X-RAY MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38419 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 28.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.31000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: NCK1-APO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TECHNIQUE: HANGING-DROP, VAPOR REMARK 280 -DIFFUSION PROTEIN CONCENTRATION: 8MG/ML PROTEIN:LIGAND = 1:1.1 REMARK 280 RESERVOIRE: 2.4M (NH4)2HPO4, 0.1M TRIS, PH 8.5 CRYOCONDITIONS: REMARK 280 50% MPD, PH 8.50, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.54600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 32.53050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.25900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 32.53050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.54600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.25900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, M REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 276 REMARK 465 GLU L 470 REMARK 465 GLU L 471 REMARK 465 PRO L 481 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO B 277 N CA CB CG CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 276 N - CA - C ANGL. DEV. = 23.8 DEGREES REMARK 500 ARG B 299 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 SER B 377 CA - C - O ANGL. DEV. = 43.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 337 -10.18 74.76 REMARK 500 VAL A 373 -66.23 -106.71 REMARK 500 THR B 337 -14.00 72.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2CI8 RELATED DB: PDB REMARK 900 NCK1-SH2 DOMAIN - ESTABLISHING THE PHOSPHOTYROSINE PEPTIDE BINDING REMARK 900 SPECIFICITIES OF NCK1 AND NCK2 SH2 DOMAINS REMARK 900 RELATED ID: 2CIA RELATED DB: PDB REMARK 900 NCK2 SH2-DOMAIN IN COMPLEX WITH A DECAPHOSPHOPEPTIDE FROM EPEC REMARK 900 PROTEIN TIR REMARK 900 RELATED ID: 2CUB RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE SH3 DOMAIN OF THE HUMANCYTOPLASMIC REMARK 900 PROTEIN NCK1 DBREF 2CI9 A 281 377 UNP P16333 NCK1_HUMAN 281 377 DBREF 2CI9 B 281 377 UNP P16333 NCK1_HUMAN 281 377 DBREF 2CI9 L 470 481 UNP O50190 O50190_ECOLX 469 480 DBREF 2CI9 M 470 481 UNP O50190 O50190_ECOLX 469 480 SEQADV 2CI9 GLY A 276 UNP P16333 EXPRESSION TAG SEQADV 2CI9 PRO A 277 UNP P16333 EXPRESSION TAG SEQADV 2CI9 LEU A 278 UNP P16333 EXPRESSION TAG SEQADV 2CI9 GLY A 279 UNP P16333 EXPRESSION TAG SEQADV 2CI9 SER A 280 UNP P16333 EXPRESSION TAG SEQADV 2CI9 GLY B 276 UNP P16333 EXPRESSION TAG SEQADV 2CI9 PRO B 277 UNP P16333 EXPRESSION TAG SEQADV 2CI9 LEU B 278 UNP P16333 EXPRESSION TAG SEQADV 2CI9 GLY B 279 UNP P16333 EXPRESSION TAG SEQADV 2CI9 SER B 280 UNP P16333 EXPRESSION TAG SEQRES 1 A 102 GLY PRO LEU GLY SER PRO TRP TYR TYR GLY LYS VAL THR SEQRES 2 A 102 ARG HIS GLN ALA GLU MET ALA LEU ASN GLU ARG GLY HIS SEQRES 3 A 102 GLU GLY ASP PHE LEU ILE ARG ASP SER GLU SER SER PRO SEQRES 4 A 102 ASN ASP PHE SER VAL SER LEU LYS ALA GLN GLY LYS ASN SEQRES 5 A 102 LYS HIS PHE LYS VAL GLN LEU LYS GLU THR VAL TYR CYS SEQRES 6 A 102 ILE GLY GLN ARG LYS PHE SER THR MET GLU GLU LEU VAL SEQRES 7 A 102 GLU HIS TYR LYS LYS ALA PRO ILE PHE THR SER GLU GLN SEQRES 8 A 102 GLY GLU LYS LEU TYR LEU VAL LYS HIS LEU SER SEQRES 1 B 102 GLY PRO LEU GLY SER PRO TRP TYR TYR GLY LYS VAL THR SEQRES 2 B 102 ARG HIS GLN ALA GLU MET ALA LEU ASN GLU ARG GLY HIS SEQRES 3 B 102 GLU GLY ASP PHE LEU ILE ARG ASP SER GLU SER SER PRO SEQRES 4 B 102 ASN ASP PHE SER VAL SER LEU LYS ALA GLN GLY LYS ASN SEQRES 5 B 102 LYS HIS PHE LYS VAL GLN LEU LYS GLU THR VAL TYR CYS SEQRES 6 B 102 ILE GLY GLN ARG LYS PHE SER THR MET GLU GLU LEU VAL SEQRES 7 B 102 GLU HIS TYR LYS LYS ALA PRO ILE PHE THR SER GLU GLN SEQRES 8 B 102 GLY GLU LYS LEU TYR LEU VAL LYS HIS LEU SER SEQRES 1 L 12 GLU GLU HIS ILE PTR ASP GLU VAL ALA ALA ASP PRO SEQRES 1 M 12 GLU GLU HIS ILE PTR ASP GLU VAL ALA ALA ASP PRO MODRES 2CI9 PTR L 474 TYR O-PHOSPHOTYROSINE MODRES 2CI9 PTR M 474 TYR O-PHOSPHOTYROSINE HET PTR L 474 16 HET PTR M 474 16 HETNAM PTR O-PHOSPHOTYROSINE HETSYN PTR PHOSPHONOTYROSINE FORMUL 3 PTR 2(C9 H12 N O6 P) FORMUL 5 HOH *255(H2 O) HELIX 1 1 THR A 288 GLU A 298 1 11 HELIX 2 2 THR A 348 ALA A 359 1 12 SHEET 1 AA 3 ASP A 304 SER A 310 0 SHEET 2 AA 3 ASP A 316 ALA A 323 -1 O ASN A 315 N GLU A 311 SHEET 3 AA 3 LYS A 326 VAL A 332 -1 O GLY A 325 N GLN A 324 SHEET 1 AB 2 VAL A 338 ILE A 341 0 SHEET 2 AB 2 ARG A 344 PHE A 346 -1 O ARG A 344 N ILE A 341 SHEET 1 AC 2 PHE A 362 SER A 364 0 SHEET 2 AC 2 GLU A 368 LEU A 370 -1 N LEU A 370 O PHE A 362 LINK C ILE L 473 N PTR L 474 1555 1555 1.34 LINK C PTR L 474 N ASP L 475 1555 1555 1.33 LINK C ILE M 473 N PTR M 474 1555 1555 1.33 LINK C PTR M 474 N ASP M 475 1555 1555 1.32 CISPEP 1 GLN B 366 GLY B 367 0 -3.95 CRYST1 55.092 60.518 65.061 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018151 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016524 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015370 0.00000