PDB Short entry for 2COA HEADER SIGNALING PROTEIN 17-MAY-05 2COA TITLE SOLUTION STRUCTURE OF THE PH DOMAIN OF PROTEIN KINASE C, D2 TYPE FROM TITLE 2 HUMAN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN KINASE C, D2 TYPE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PH DOMAIN; COMPND 5 SYNONYM: NPKC-D2, PROTEIN KINASE D2, HSPC187; COMPND 6 EC: 2.7.1.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PKD2; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P041129-04; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS PROTEIN KINASE D2, PH DOMAIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL KEYWDS 2 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN KEYWDS 3 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.LI,K.SAITO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2COA 1 REMARK SEQADV REVDAT 2 24-FEB-09 2COA 1 VERSN REVDAT 1 17-NOV-05 2COA 0 JRNL AUTH H.LI,K.SAITO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE PH DOMAIN OF PROTEIN KINASE C, D2 JRNL TITL 2 TYPE FROM HUMAN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2COA COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000024442. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.38MM PH DOMAIN U-13C, 15N; REMARK 210 20MM D-TRIS-HCL(PH7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.913, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES WITH REMARK 210 THE LEAST RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 20 -48.29 -132.23 REMARK 500 1 ARG A 24 120.51 -31.04 REMARK 500 1 TYR A 28 96.70 -65.38 REMARK 500 1 GLN A 40 -39.28 -32.06 REMARK 500 1 THR A 44 148.70 -32.42 REMARK 500 1 GLN A 63 -30.87 -134.87 REMARK 500 1 PRO A 70 3.21 -69.80 REMARK 500 1 ASN A 73 119.05 -34.30 REMARK 500 1 PRO A 74 -166.66 -69.74 REMARK 500 1 ILE A 79 79.01 -106.47 REMARK 500 1 VAL A 80 107.27 -51.51 REMARK 500 1 ASN A 83 -38.40 -134.96 REMARK 500 1 ALA A 104 -62.51 -135.01 REMARK 500 1 PRO A 122 5.19 -69.81 REMARK 500 2 TYR A 17 146.25 -170.43 REMARK 500 2 ARG A 24 93.28 -60.69 REMARK 500 2 TYR A 28 97.49 -60.41 REMARK 500 2 TYR A 47 178.55 -55.07 REMARK 500 2 GLN A 63 -30.16 -134.95 REMARK 500 2 ASN A 73 126.85 -36.67 REMARK 500 2 PRO A 74 -169.20 -69.73 REMARK 500 2 ILE A 79 77.59 -102.84 REMARK 500 2 VAL A 80 109.53 -51.37 REMARK 500 2 ASN A 83 -39.75 -135.00 REMARK 500 2 PRO A 96 6.26 -69.71 REMARK 500 2 GLN A 102 -55.48 -125.92 REMARK 500 2 ALA A 104 -175.02 -176.44 REMARK 500 2 GLU A 105 -24.77 -37.71 REMARK 500 2 PRO A 122 -174.58 -69.68 REMARK 500 3 SER A 5 153.88 -44.86 REMARK 500 3 TYR A 17 144.03 -170.35 REMARK 500 3 ASN A 19 30.31 -95.03 REMARK 500 3 ARG A 24 94.36 -51.11 REMARK 500 3 TYR A 28 90.31 -60.28 REMARK 500 3 LYS A 34 -50.90 -122.90 REMARK 500 3 ARG A 46 146.17 -35.83 REMARK 500 3 TYR A 47 152.78 -45.28 REMARK 500 3 ALA A 62 113.80 -37.03 REMARK 500 3 GLN A 63 -30.04 -134.53 REMARK 500 3 PRO A 70 3.30 -69.80 REMARK 500 3 ASN A 73 129.83 -38.89 REMARK 500 3 PRO A 74 -172.98 -69.74 REMARK 500 3 ILE A 79 79.81 -103.88 REMARK 500 3 VAL A 80 102.93 -52.95 REMARK 500 3 ASN A 83 -38.57 -131.15 REMARK 500 3 GLU A 90 176.89 -49.05 REMARK 500 3 PRO A 99 1.60 -69.80 REMARK 500 3 GLN A 102 178.17 -49.01 REMARK 500 3 ALA A 104 -61.71 -130.40 REMARK 500 4 TYR A 17 145.64 -172.47 REMARK 500 REMARK 500 THIS ENTRY HAS 330 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSI002014776.1 RELATED DB: TARGETDB DBREF 2COA A 8 119 UNP Q9BZL6 KPCD2_HUMAN 398 509 SEQADV 2COA GLY A 1 UNP Q9BZL6 CLONING ARTIFACT SEQADV 2COA SER A 2 UNP Q9BZL6 CLONING ARTIFACT SEQADV 2COA SER A 3 UNP Q9BZL6 CLONING ARTIFACT SEQADV 2COA GLY A 4 UNP Q9BZL6 CLONING ARTIFACT SEQADV 2COA SER A 5 UNP Q9BZL6 CLONING ARTIFACT SEQADV 2COA SER A 6 UNP Q9BZL6 CLONING ARTIFACT SEQADV 2COA GLY A 7 UNP Q9BZL6 CLONING ARTIFACT SEQADV 2COA SER A 120 UNP Q9BZL6 CLONING ARTIFACT SEQADV 2COA GLY A 121 UNP Q9BZL6 CLONING ARTIFACT SEQADV 2COA PRO A 122 UNP Q9BZL6 CLONING ARTIFACT SEQADV 2COA SER A 123 UNP Q9BZL6 CLONING ARTIFACT SEQADV 2COA SER A 124 UNP Q9BZL6 CLONING ARTIFACT SEQADV 2COA GLY A 125 UNP Q9BZL6 CLONING ARTIFACT SEQRES 1 A 125 GLY SER SER GLY SER SER GLY THR LEU ARG GLU GLY TRP SEQRES 2 A 125 VAL VAL HIS TYR SER ASN LYS ASP THR LEU ARG LYS ARG SEQRES 3 A 125 HIS TYR TRP ARG LEU ASP CYS LYS CYS ILE THR LEU PHE SEQRES 4 A 125 GLN ASN ASN THR THR ASN ARG TYR TYR LYS GLU ILE PRO SEQRES 5 A 125 LEU SER GLU ILE LEU THR VAL GLU SER ALA GLN ASN PHE SEQRES 6 A 125 SER LEU VAL PRO PRO GLY THR ASN PRO HIS CYS PHE GLU SEQRES 7 A 125 ILE VAL THR ALA ASN ALA THR TYR PHE VAL GLY GLU MET SEQRES 8 A 125 PRO GLY GLY THR PRO GLY GLY PRO SER GLY GLN GLY ALA SEQRES 9 A 125 GLU ALA ALA ARG GLY TRP GLU THR ALA ILE ARG GLN ALA SEQRES 10 A 125 LEU MET SER GLY PRO SER SER GLY HELIX 1 1 GLU A 105 SER A 120 1 16 SHEET 1 A 4 ARG A 10 HIS A 16 0 SHEET 2 A 4 LYS A 25 LEU A 31 -1 SHEET 3 A 4 CYS A 35 PHE A 39 -1 SHEET 4 A 4 LYS A 49 PRO A 52 -1 SHEET 1 B 3 THR A 58 SER A 61 0 SHEET 2 B 3 HIS A 75 VAL A 80 -1 SHEET 3 B 3 VAL A 88 GLY A 89 -1 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000