PDB Short entry for 2COP HEADER LIPID BINDING PROTEIN 18-MAY-05 2COP TITLE SOLUTION STRUCTURE OF RSGI RUH-040, AN ACBP DOMAIN FROM HUMAN CDNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACYL-COENZYME A BINDING DOMAIN CONTAINING 6; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ACYL COA BINDING DOMAIN, ACBP; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GENEID:84320; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040830-11; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS (E.COLI) KEYWDS ACYL COA BINDING PROTEIN, COA BINDING PROTEIN, LIPID BINDING PROTEIN, KEYWDS 2 STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL KEYWDS 3 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.Z.M.RUHUL MOMEN,H.HIROTA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2COP 1 REMARK SEQADV REVDAT 2 24-FEB-09 2COP 1 VERSN REVDAT 1 18-NOV-05 2COP 0 JRNL AUTH A.Z.M.RUHUL MOMEN,H.HIROTA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF RSGI RUH-040, AN ACBP DOMAIN FROM JRNL TITL 2 HUMAN CDNA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C REMARK 3 AUTHORS : VARIAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2COP COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000024457. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.26MM ACBP DOMAIN U-15N, 13C; REMARK 210 20MM D-TRIS-HCL (PH7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 10% REMARK 210 D20 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9295, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES WITH REMARK 210 THE LOWEST ENERGY,STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 3 160.72 -44.49 REMARK 500 1 VAL A 43 -65.19 -96.23 REMARK 500 1 ASN A 47 35.26 35.19 REMARK 500 1 ASP A 55 78.70 -68.82 REMARK 500 1 ILE A 81 -65.34 -90.56 REMARK 500 1 GLU A 97 167.54 -47.51 REMARK 500 1 SER A 104 100.84 -51.43 REMARK 500 1 PRO A 106 -175.04 -69.75 REMARK 500 2 ARG A 28 -32.24 -39.53 REMARK 500 2 VAL A 43 -63.90 -91.66 REMARK 500 2 ASN A 45 106.55 -46.18 REMARK 500 2 CYS A 46 129.03 -38.12 REMARK 500 2 SER A 52 152.23 -48.23 REMARK 500 2 GLU A 97 152.82 -46.33 REMARK 500 2 GLU A 102 88.27 -52.17 REMARK 500 3 SER A 2 94.68 -68.72 REMARK 500 3 VAL A 43 -65.53 -95.18 REMARK 500 3 GLU A 63 -71.76 -62.72 REMARK 500 3 ILE A 81 -65.39 -91.63 REMARK 500 3 LYS A 99 170.37 -51.99 REMARK 500 3 LYS A 101 42.16 -109.08 REMARK 500 3 ALA A 103 140.58 -172.76 REMARK 500 3 PRO A 106 2.61 -69.75 REMARK 500 4 VAL A 43 -64.65 -94.76 REMARK 500 4 ASP A 70 51.12 -109.38 REMARK 500 4 LYS A 101 113.15 -172.35 REMARK 500 4 ALA A 103 42.07 -83.83 REMARK 500 4 SER A 107 52.25 -93.63 REMARK 500 4 SER A 108 -60.96 -125.17 REMARK 500 5 GLU A 10 -39.80 -36.31 REMARK 500 5 VAL A 43 -66.52 -99.00 REMARK 500 5 ASN A 45 108.34 -54.03 REMARK 500 5 CYS A 46 106.63 -36.33 REMARK 500 5 PRO A 51 -177.49 -69.71 REMARK 500 5 ASP A 55 79.73 -69.11 REMARK 500 5 GLU A 63 -71.61 -61.45 REMARK 500 5 LEU A 68 50.94 -90.34 REMARK 500 5 GLU A 97 171.77 -49.46 REMARK 500 6 GLU A 10 -36.48 -38.98 REMARK 500 6 ARG A 28 -30.88 -37.50 REMARK 500 6 VAL A 43 -69.86 -91.24 REMARK 500 6 GLU A 63 -70.27 -61.18 REMARK 500 6 ASP A 70 51.79 -103.82 REMARK 500 6 GLU A 97 167.88 -45.14 REMARK 500 6 GLU A 102 153.21 -44.06 REMARK 500 6 ALA A 103 42.92 -82.87 REMARK 500 6 SER A 104 83.60 -59.68 REMARK 500 7 LEU A 8 -61.49 -90.19 REMARK 500 7 VAL A 43 -64.97 -97.35 REMARK 500 7 CYS A 46 105.30 -35.94 REMARK 500 REMARK 500 THIS ENTRY HAS 147 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSI002006003.1 RELATED DB: TARGETDB DBREF 2COP A 8 103 UNP Q9BR61 Q9BR61_HUMAN 42 137 SEQADV 2COP GLY A 1 UNP Q9BR61 CLONING ARTIFACT SEQADV 2COP SER A 2 UNP Q9BR61 CLONING ARTIFACT SEQADV 2COP SER A 3 UNP Q9BR61 CLONING ARTIFACT SEQADV 2COP GLY A 4 UNP Q9BR61 CLONING ARTIFACT SEQADV 2COP SER A 5 UNP Q9BR61 CLONING ARTIFACT SEQADV 2COP SER A 6 UNP Q9BR61 CLONING ARTIFACT SEQADV 2COP GLY A 7 UNP Q9BR61 CLONING ARTIFACT SEQADV 2COP SER A 104 UNP Q9BR61 CLONING ARTIFACT SEQADV 2COP GLY A 105 UNP Q9BR61 CLONING ARTIFACT SEQADV 2COP PRO A 106 UNP Q9BR61 CLONING ARTIFACT SEQADV 2COP SER A 107 UNP Q9BR61 CLONING ARTIFACT SEQADV 2COP SER A 108 UNP Q9BR61 CLONING ARTIFACT SEQADV 2COP GLY A 109 UNP Q9BR61 CLONING ARTIFACT SEQRES 1 A 109 GLY SER SER GLY SER SER GLY LEU ALA GLU LEU PHE GLU SEQRES 2 A 109 LYS ALA ALA ALA HIS LEU GLN GLY LEU ILE GLN VAL ALA SEQRES 3 A 109 SER ARG GLU GLN LEU LEU TYR LEU TYR ALA ARG TYR LYS SEQRES 4 A 109 GLN VAL LYS VAL GLY ASN CYS ASN THR PRO LYS PRO SER SEQRES 5 A 109 PHE PHE ASP PHE GLU GLY LYS GLN LYS TRP GLU ALA TRP SEQRES 6 A 109 LYS ALA LEU GLY ASP SER SER PRO SER GLN ALA MET GLN SEQRES 7 A 109 GLU TYR ILE ALA VAL VAL LYS LYS LEU ASP PRO GLY TRP SEQRES 8 A 109 ASN PRO GLN ILE PRO GLU LYS LYS GLY LYS GLU ALA SER SEQRES 9 A 109 GLY PRO SER SER GLY HELIX 1 1 LEU A 8 GLN A 20 1 13 HELIX 2 2 SER A 27 VAL A 43 1 17 HELIX 3 3 ASP A 55 ALA A 67 1 13 HELIX 4 4 SER A 72 ASP A 88 1 17 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000