PDB Short entry for 2COR
HEADER    STRUCTURAL PROTEIN                      18-MAY-05   2COR              
TITLE     SOLUTION STRUCTURE OF THE THIRD LIM DOMAIN OF PARTICULARLY            
TITLE    2 INTERESTING NEW CYS-HIS PROTEIN                                      
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: PINCH PROTEIN;                                             
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: LIM DOMAIN;                                                
COMPND   5 SYNONYM: PARTICULARLY INTERESTING NEW CYS-HIS PROTEIN, LIM           
COMPND   6 AND SENESCENT CELL ANTIGEN-LIKE DOMAINS 1;                           
COMPND   7 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: LIMS1;                                                         
SOURCE   6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE   7 EXPRESSION_SYSTEM_PLASMID: P040727-07;                               
SOURCE   8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS                           
KEYWDS    LIM DOMAIN, PINCH PROTEIN, PARTICULARLY INTERESTING NEW CYS-          
KEYWDS   2 HIS PROTEIN, LIM AND SENESCENT CELL ANTIGEN-LIKE DOMAINS 1,          
KEYWDS   3 STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN             
KEYWDS   4 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL                 
KEYWDS   5 GENOMICS/PROTEOMICS INITIATIVE, RSGI, STRUCTURAL PROTEIN             
EXPDTA    SOLUTION NMR                                                          
NUMMDL    20                                                                    
AUTHOR    X.R.QIN,T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL             
AUTHOR   2 GENOMICS/PROTEOMICS INITIATIVE (RSGI)                                
REVDAT   2   24-FEB-09 2COR    1       VERSN                                    
REVDAT   1   18-NOV-05 2COR    0                                                
JRNL        AUTH   X.R.QIN,T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA                     
JRNL        TITL   SOLUTION STRUCTURE OF THE THIRD LIM DOMAIN OF                
JRNL        TITL 2 PARTICULARLY INTERESTING NEW CYS-HIS PROTEIN                 
JRNL        REF    TO BE PUBLISHED                                              
JRNL        REFN                                                                
REMARK   1                                                                      
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : CYANA 2.0.17                                         
REMARK   3   AUTHORS     : GUNTERT,P.                                           
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 2COR COMPLIES WITH FORMAT V. 3.15, 01-DEC-08                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-MAY-05.                  
REMARK 100 THE RCSB ID CODE IS RCSB024459.                                      
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 298                                
REMARK 210  PH                             : 7.0                                
REMARK 210  IONIC STRENGTH                 : 120MM                              
REMARK 210  PRESSURE                       : AMBIENT                            
REMARK 210  SAMPLE CONTENTS                : 1.39MM 13C, 15N-LABELED            
REMARK 210                                   PROTEIN; 20MM D-TRIS-HCL;          
REMARK 210                                   100MM NACL; 1MM D-DTT; 0.02%       
REMARK 210                                   NAN3; 0.05MM ZNCL2                 
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 3D_15N-SEPARATED_NOESY, 3D_        
REMARK 210                                   13C-SEPARATED_NOESY                
REMARK 210  SPECTROMETER FIELD STRENGTH    : 800 MHZ, 900 MHZ                   
REMARK 210  SPECTROMETER MODEL             : INOVA                              
REMARK 210  SPECTROMETER MANUFACTURER      : VARIAN                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : VNMR 6.1C, NMRPIPE 20031121,       
REMARK 210                                   NMRVIEW 5.0.4, KUJIRA 0.9296,      
REMARK 210                                   CYANA 2.0.17                       
REMARK 210   METHOD USED                   : TORSION ANGLE DYNAMICS             
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 100                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 20                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : TARGET FUNCTION, STRUCTURES        
REMARK 210                                   WITH THE LOWEST ENERGY,            
REMARK 210                                   STRUCTURES WITH THE LEAST          
REMARK 210                                   RESTRAINT VIOLATIONS               
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: SPECTROMETER_ID 1 FOR 3D_15N_SEPARATED_NOESY,                
REMARK 210  SPECTROMETER_ID 2 FOR 3D_13C_SEPARATED_NOESY                        
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 ILE A  24      145.45    -36.31                                   
REMARK 500  1 ILE A  25       71.25   -115.08                                   
REMARK 500  1 CYS A  44      163.49    -48.24                                   
REMARK 500  1 LEU A  51      178.57    -54.50                                   
REMARK 500  2 PRO A  39        2.87    -69.73                                   
REMARK 500  2 CYS A  44      158.90    -47.63                                   
REMARK 500  2 VAL A  73       39.18    -82.12                                   
REMARK 500  3 SER A   2      140.13   -170.30                                   
REMARK 500  3 SER A   5       41.66     35.73                                   
REMARK 500  3 ALA A  10      133.34   -172.86                                   
REMARK 500  3 LYS A  20      -51.95   -130.49                                   
REMARK 500  3 PRO A  39        2.97    -69.73                                   
REMARK 500  3 LEU A  51      174.66    -54.67                                   
REMARK 500  3 ALA A  55      176.25    -47.72                                   
REMARK 500  4 SER A   3      138.22   -171.85                                   
REMARK 500  4 LYS A  20      -51.90   -129.07                                   
REMARK 500  4 ASP A  26      -70.36    -50.17                                   
REMARK 500  4 PRO A  39        1.35    -69.81                                   
REMARK 500  4 CYS A  44      156.02    -47.90                                   
REMARK 500  4 LEU A  51      171.02    -51.65                                   
REMARK 500  4 ALA A  55      151.44    -35.63                                   
REMARK 500  4 SER A  77       98.89    -63.95                                   
REMARK 500  5 LYS A   9       43.79    -84.11                                   
REMARK 500  5 ILE A  24      148.99    -38.10                                   
REMARK 500  5 ILE A  25       72.31   -118.66                                   
REMARK 500  5 PRO A  39        2.48    -69.74                                   
REMARK 500  5 LEU A  51      175.05    -57.69                                   
REMARK 500  5 VAL A  73      155.78    -41.43                                   
REMARK 500  5 SER A  74       99.18    -44.48                                   
REMARK 500  6 LYS A  20      -54.39   -126.31                                   
REMARK 500  6 PHE A  32      118.43   -165.71                                   
REMARK 500  6 PRO A  39        2.79    -69.78                                   
REMARK 500  6 CYS A  44      153.88    -46.81                                   
REMARK 500  6 LEU A  51      174.41    -48.81                                   
REMARK 500  6 HIS A  68      -35.86    -37.75                                   
REMARK 500  6 SER A  78      135.06    -36.92                                   
REMARK 500  7 ALA A  10      111.96   -169.88                                   
REMARK 500  7 LYS A  20      -52.61   -120.20                                   
REMARK 500  7 ASN A  34       47.91     70.59                                   
REMARK 500  7 PRO A  39        1.00    -69.76                                   
REMARK 500  7 CYS A  44      160.63    -45.95                                   
REMARK 500  7 LEU A  51      173.46    -50.17                                   
REMARK 500  8 SER A   2      113.67   -167.48                                   
REMARK 500  8 LEU A  13      107.15    -51.03                                   
REMARK 500  8 LYS A  20      -50.33   -128.16                                   
REMARK 500  8 PHE A  32      113.04   -162.00                                   
REMARK 500  8 PRO A  39        3.18    -69.79                                   
REMARK 500  8 CYS A  44      163.60    -49.23                                   
REMARK 500  8 LEU A  51      175.36    -49.69                                   
REMARK 500  8 ALA A  55      150.24    -42.36                                   
REMARK 500  8 LYS A  59       38.72     38.91                                   
REMARK 500  9 ILE A  24      149.48    -37.14                                   
REMARK 500  9 ASN A  34       48.34     70.08                                   
REMARK 500  9 PRO A  39        1.91    -69.82                                   
REMARK 500  9 CYS A  44      161.05    -47.16                                   
REMARK 500  9 LEU A  51      175.42    -50.65                                   
REMARK 500  9 ALA A  55      173.67    -48.15                                   
REMARK 500  9 MET A  71       39.80    -81.27                                   
REMARK 500  9 PRO A  76        8.58    -69.69                                   
REMARK 500  9 SER A  77      133.96    -33.53                                   
REMARK 500  9 SER A  78      144.49    -36.79                                   
REMARK 500 10 ASN A  34       48.50     70.45                                   
REMARK 500 10 PRO A  39        1.14    -69.73                                   
REMARK 500 10 LEU A  51      176.87    -57.00                                   
REMARK 500 10 SER A  77      -57.32   -121.77                                   
REMARK 500 10 SER A  78      131.66    -37.09                                   
REMARK 500 11 SER A   3      105.68    -49.38                                   
REMARK 500 11 SER A   6       42.87    -81.18                                   
REMARK 500 11 ILE A  24      145.70    -36.96                                   
REMARK 500 11 CYS A  44      157.74    -45.11                                   
REMARK 500 11 LEU A  51      173.16    -50.81                                   
REMARK 500 11 ALA A  55      160.49    -44.17                                   
REMARK 500 12 LEU A  13      113.08   -174.88                                   
REMARK 500 12 ILE A  24      144.58    -39.68                                   
REMARK 500 12 ILE A  25       72.51   -113.04                                   
REMARK 500 12 CYS A  44      162.38    -40.84                                   
REMARK 500 12 LEU A  51      179.20    -54.36                                   
REMARK 500 12 PRO A  76        1.70    -69.77                                   
REMARK 500 13 ILE A  24      149.24    -37.86                                   
REMARK 500 13 CYS A  44      164.95    -43.87                                   
REMARK 500 13 LEU A  51      174.10    -49.56                                   
REMARK 500 13 VAL A  73      172.25    -45.62                                   
REMARK 500 13 SER A  74      133.78    -34.47                                   
REMARK 500 13 PRO A  76       88.70    -69.72                                   
REMARK 500 14 LYS A  20      -61.79   -102.97                                   
REMARK 500 14 PRO A  39        1.60    -69.67                                   
REMARK 500 14 CYS A  44      163.67    -44.77                                   
REMARK 500 14 GLU A  50      102.82    -59.70                                   
REMARK 500 14 LEU A  51      177.01    -49.93                                   
REMARK 500 14 PRO A  76       90.19    -69.72                                   
REMARK 500 15 LYS A  20      -53.54   -126.49                                   
REMARK 500 15 GLU A  27     -179.77    -69.67                                   
REMARK 500 15 PRO A  39        1.92    -69.70                                   
REMARK 500 15 CYS A  44      162.68    -43.74                                   
REMARK 500 15 GLU A  50      104.48    -58.41                                   
REMARK 500 15 LEU A  51      177.32    -51.25                                   
REMARK 500 16 SER A   2       47.15    -81.59                                   
REMARK 500 16 LYS A  20      -53.17   -121.10                                   
REMARK 500 16 ILE A  25       78.58   -114.45                                   
REMARK 500 16 PRO A  39        3.66    -69.78                                   
REMARK 500 16 CYS A  44      155.57    -43.52                                   
REMARK 500 16 LEU A  51      173.35    -48.51                                   
REMARK 500 16 PRO A  76     -174.24    -69.76                                   
REMARK 500 17 ALA A  10      125.89   -170.71                                   
REMARK 500 17 ILE A  24      152.47    -35.00                                   
REMARK 500 17 ILE A  25       78.59   -117.00                                   
REMARK 500 17 PRO A  39        2.98    -69.78                                   
REMARK 500 17 CYS A  44      157.77    -45.72                                   
REMARK 500 17 LEU A  51      174.64    -51.30                                   
REMARK 500 17 PRO A  76       84.88    -69.76                                   
REMARK 500 18 ILE A  25       74.95   -111.17                                   
REMARK 500 18 PRO A  39        1.32    -69.78                                   
REMARK 500 18 GLU A  50      108.13    -56.95                                   
REMARK 500 18 LEU A  51      177.73    -54.87                                   
REMARK 500 18 MET A  71      -39.42    -38.98                                   
REMARK 500 18 SER A  74       49.76     38.37                                   
REMARK 500 18 PRO A  76       10.54    -69.75                                   
REMARK 500 18 SER A  77      130.81    -30.79                                   
REMARK 500 19 LYS A  20      -61.64   -104.62                                   
REMARK 500 19 CYS A  44      163.11    -42.85                                   
REMARK 500 19 GLU A  50      102.77    -58.60                                   
REMARK 500 19 LEU A  51      174.96    -51.78                                   
REMARK 500 19 ALA A  55      177.32    -55.23                                   
REMARK 500 20 ILE A  24      144.63    -37.23                                   
REMARK 500 20 GLU A  27     -177.23    -65.49                                   
REMARK 500 20 CYS A  44      161.37    -42.94                                   
REMARK 500 20 LEU A  51      172.34    -53.81                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 620                                                                      
REMARK 620 METAL COORDINATION                                                   
REMARK 620  (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;              
REMARK 620  SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):                            
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                           1  ZN A 201  ZN                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 CYS A  18   SG                                                     
REMARK 620 2 CYS A  21   SG  111.9                                              
REMARK 620 3 HIS A  38   ND1  96.4  94.5                                        
REMARK 620 4 HIS A  41   NE2 130.3 104.7 113.3                                  
REMARK 620 N                    1     2     3                                   
REMARK 620                                                                      
REMARK 620 COORDINATION ANGLES FOR:  M RES CSSEQI METAL                         
REMARK 620                           1  ZN A 401  ZN                            
REMARK 620 N RES CSSEQI ATOM                                                    
REMARK 620 1 CYS A  44   SG                                                     
REMARK 620 2 CYS A  47   SG  101.2                                              
REMARK 620 3 CYS A  64   SG  116.2 117.9                                        
REMARK 620 4 CYS A  67   SG  103.5 101.4 114.4                                  
REMARK 620 N                    1     2     3                                   
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201                  
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401                  
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: HSS001001107.1   RELATED DB: TARGETDB                    
DBREF  2COR A    8    73  UNP    P48059   PINC_HUMAN     125    190             
SEQADV 2COR GLY A    1  UNP  P48059              CLONING ARTIFACT               
SEQADV 2COR SER A    2  UNP  P48059              CLONING ARTIFACT               
SEQADV 2COR SER A    3  UNP  P48059              CLONING ARTIFACT               
SEQADV 2COR GLY A    4  UNP  P48059              CLONING ARTIFACT               
SEQADV 2COR SER A    5  UNP  P48059              CLONING ARTIFACT               
SEQADV 2COR SER A    6  UNP  P48059              CLONING ARTIFACT               
SEQADV 2COR GLY A    7  UNP  P48059              CLONING ARTIFACT               
SEQADV 2COR SER A   74  UNP  P48059              CLONING ARTIFACT               
SEQADV 2COR GLY A   75  UNP  P48059              CLONING ARTIFACT               
SEQADV 2COR PRO A   76  UNP  P48059              CLONING ARTIFACT               
SEQADV 2COR SER A   77  UNP  P48059              CLONING ARTIFACT               
SEQADV 2COR SER A   78  UNP  P48059              CLONING ARTIFACT               
SEQADV 2COR GLY A   79  UNP  P48059              CLONING ARTIFACT               
SEQRES   1 A   79  GLY SER SER GLY SER SER GLY GLU LYS ALA ARG GLY LEU          
SEQRES   2 A   79  GLY LYS TYR ILE CYS GLN LYS CYS HIS ALA ILE ILE ASP          
SEQRES   3 A   79  GLU GLN PRO LEU ILE PHE LYS ASN ASP PRO TYR HIS PRO          
SEQRES   4 A   79  ASP HIS PHE ASN CYS ALA ASN CYS GLY LYS GLU LEU THR          
SEQRES   5 A   79  ALA ASP ALA ARG GLU LEU LYS GLY GLU LEU TYR CYS LEU          
SEQRES   6 A   79  PRO CYS HIS ASP LYS MET GLY VAL SER GLY PRO SER SER          
SEQRES   7 A   79  GLY                                                          
HET     ZN  A 201       1                                                       
HET     ZN  A 401       1                                                       
HETNAM      ZN ZINC ION                                                         
FORMUL   2   ZN    2(ZN 2+)                                                     
HELIX    1   1 CYS A   64  LYS A   70  1                                   7    
SHEET    1   A 6 ILE A  24  ILE A  25  0                                        
SHEET    2   A 6 TYR A  16  ILE A  17 -1                                        
SHEET    3   A 6 PRO A  36  TYR A  37  1                                        
SHEET    4   A 6 LEU A  30  ILE A  31  1                                        
SHEET    5   A 6 ARG A  56  LEU A  58  1                                        
SHEET    6   A 6 GLU A  61  TYR A  63 -1  O  TYR A  63   N  ARG A  56           
LINK        ZN    ZN A 201                 SG  CYS A  18     1555   1555  2.33  
LINK        ZN    ZN A 201                 SG  CYS A  21     1555   1555  2.36  
LINK        ZN    ZN A 201                 ND1 HIS A  38     1555   1555  2.07  
LINK        ZN    ZN A 201                 NE2 HIS A  41     1555   1555  2.06  
LINK        ZN    ZN A 401                 SG  CYS A  44     1555   1555  2.37  
LINK        ZN    ZN A 401                 SG  CYS A  47     1555   1555  2.33  
LINK        ZN    ZN A 401                 SG  CYS A  64     1555   1555  2.34  
LINK        ZN    ZN A 401                 SG  CYS A  67     1555   1555  2.37  
SITE     1 AC1  4 CYS A  18  CYS A  21  HIS A  38  HIS A  41                    
SITE     1 AC2  4 CYS A  44  CYS A  47  CYS A  64  CYS A  67                    
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000